Wall clock time and date at job start Tue Mar 31 2020 03:31:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86803 * 120.00092 * 2 1
4 4 H 1.48499 * 109.47057 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47094 * 300.00631 * 3 2 1
6 6 H 1.48499 * 109.46794 * 60.00688 * 3 2 1
7 7 C 1.37885 * 119.99864 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99794 * 185.06731 * 7 2 1
9 9 C 1.50697 * 119.99721 * 5.06585 * 7 2 1
10 10 C 1.52992 * 115.54960 * 279.39749 * 9 7 2
11 11 N 1.46900 * 109.47575 * 320.39567 * 10 9 7
12 12 C 1.46899 * 111.00211 * 184.87708 * 11 10 9
13 13 H 1.08993 * 109.47279 * 30.65733 * 12 11 10
14 14 C 1.53002 * 109.46855 * 270.66249 * 12 11 10
15 15 C 1.50707 * 109.47092 * 303.21041 * 14 12 11
16 16 N 1.34770 * 119.99910 * 185.54884 * 15 14 12
17 17 O 1.21276 * 119.99835 * 5.54989 * 15 14 12
18 18 C 1.52996 * 109.47228 * 150.66337 * 12 11 10
19 19 C 1.53179 * 109.54362 * 299.55170 * 18 12 11
20 20 C 1.53093 * 109.16567 * 183.15265 * 19 18 12
21 21 O 1.42905 * 109.41251 * 57.61103 * 20 19 18
22 22 C 1.42904 * 114.09658 * 298.83824 * 21 20 19
23 23 C 1.53095 * 109.41512 * 61.16206 * 22 21 20
24 24 C 1.52999 * 117.49789 * 65.07468 * 9 7 2
25 25 C 1.53000 * 60.03437 * 107.49718 * 24 9 7
26 26 H 0.96994 * 119.99947 * 359.97438 * 1 2 3
27 27 H 1.09004 * 109.47581 * 80.39543 * 10 9 7
28 28 H 1.09005 * 109.47179 * 200.39474 * 10 9 7
29 29 H 1.00902 * 110.99751 * 308.82821 * 11 10 9
30 30 H 1.08995 * 109.47477 * 63.20772 * 14 12 11
31 31 H 1.08997 * 109.47504 * 183.21625 * 14 12 11
32 32 H 0.97000 * 120.00333 * 359.97438 * 16 15 14
33 33 H 0.97002 * 119.99953 * 179.97438 * 16 15 14
34 34 H 1.08998 * 109.54702 * 59.82330 * 18 12 11
35 35 H 1.08998 * 109.52493 * 303.06273 * 19 18 12
36 36 H 1.08997 * 109.51992 * 63.24585 * 19 18 12
37 37 H 1.08996 * 109.47887 * 297.63085 * 20 19 18
38 38 H 1.08993 * 109.48146 * 177.58831 * 20 19 18
39 39 H 1.08994 * 109.48343 * 301.17783 * 22 21 20
40 40 H 1.09002 * 109.48375 * 181.14374 * 22 21 20
41 41 H 1.08996 * 109.52693 * 182.48292 * 23 22 21
42 42 H 1.09003 * 109.57164 * 62.32438 * 23 22 21
43 43 H 1.09006 * 117.49474 * 214.99372 * 24 9 7
44 44 H 1.08998 * 117.50004 * 359.97438 * 24 9 7
45 45 H 1.08998 * 117.50485 * 107.49310 * 25 24 9
46 46 H 1.09001 * 117.49960 * 252.52272 * 25 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8906 2.3963 1.2126
7 6 2.0046 -1.1941 -0.0005
8 1 3.0814 -1.1960 0.0821
9 6 1.2554 -2.4966 -0.1164
10 6 0.6284 -3.0146 1.1795
11 7 1.5485 -2.7739 2.2991
12 6 1.0307 -3.3619 3.5417
13 1 0.4390 -4.2464 3.3062
14 6 0.1520 -2.3378 4.2630
15 6 0.9482 -1.0840 4.5185
16 7 0.4130 -0.0819 5.2434
17 8 2.0706 -0.9769 4.0717
18 6 2.2005 -3.7565 4.4454
19 6 3.0752 -4.7901 3.7292
20 6 4.1972 -5.2372 4.6699
21 8 3.6287 -5.7691 5.8683
22 6 2.8390 -4.8331 6.6048
23 6 1.6624 -4.3697 5.7419
24 6 0.5040 -2.7656 -1.4217
25 6 1.7894 -3.5337 -1.1076
26 1 -0.4850 0.8400 0.0004
27 1 -0.3110 -2.4929 1.3626
28 1 0.4384 -4.0842 1.0889
29 1 2.4714 -3.1243 2.0904
30 1 -0.7119 -2.0993 3.6427
31 1 -0.1858 -2.7533 5.2123
32 1 -0.4849 -0.1674 5.6004
33 1 0.9256 0.7250 5.4082
34 1 2.7948 -2.8732 4.6792
35 1 2.4679 -5.6515 3.4514
36 1 3.5071 -4.3438 2.8335
37 1 4.8281 -4.3828 4.9150
38 1 4.7975 -6.0043 4.1809
39 1 3.4522 -3.9735 6.8752
40 1 2.4609 -5.3090 7.5096
41 1 1.0839 -3.6228 6.2854
42 1 1.0256 -5.2220 5.5047
43 1 -0.4371 -3.3119 -1.3572
44 1 0.5512 -2.0004 -2.1965
45 1 1.6941 -4.5851 -0.8363
46 1 2.6827 -3.2737 -1.6756
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602809394.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:31:44
Heat of formation + Delta-G solvation = -84.795153 kcal
Electronic energy + Delta-G solvation = -26001.042217 eV
Core-core repulsion = 22504.160395 eV
Total energy + Delta-G solvation = -3496.881822 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.06341 -39.69375 -38.67985 -36.94061 -34.30562 -33.86908 -33.63503 -32.17682
-30.79268 -27.64925 -26.95386 -25.30064 -24.24471 -22.98316 -22.68128 -21.31956
-20.87998 -20.36459 -18.07750 -17.78649 -17.52700 -17.31876 -16.88143 -16.56897
-16.14718 -15.79956 -15.73341 -15.51157 -15.01180 -14.82112 -14.57078 -14.43112
-13.91844 -13.82741 -13.42419 -13.11966 -12.98576 -12.90464 -12.81102 -12.59915
-12.42973 -12.36276 -12.17351 -11.97032 -11.63260 -11.48064 -11.12715 -11.08372
-10.72551 -10.51151 -10.37669 -10.27625 -10.25323 -9.83757 -8.66781 -7.97092
-5.98380 1.36696 1.40600 1.49712 2.10748 2.50887 2.93614 2.99128
3.34064 3.45430 3.61964 3.74545 3.83889 4.02956 4.12530 4.24662
4.37056 4.40430 4.45627 4.49630 4.57049 4.61418 4.66566 4.77135
4.78509 4.81580 4.83888 4.86465 4.98860 5.00740 5.02351 5.09653
5.18211 5.22034 5.27983 5.36087 5.55693 5.65785 5.74642 5.93405
6.17366 6.28045 6.48307 6.74080 6.80066 6.95257 7.01911 7.65137
7.76522 9.12536
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.014963 B = 0.005744 C = 0.004878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.824115 B = 4873.522631 C = 5738.747293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.039 3.961
3 Si 0.932 3.068
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.293 1.293
7 C -0.459 4.459
8 H 0.036 0.964
9 C 0.022 3.978
10 C 0.126 3.874
11 N -0.650 5.650
12 C 0.107 3.893
13 H 0.045 0.955
14 C -0.126 4.126
15 C 0.512 3.488
16 N -0.857 5.857
17 O -0.547 6.547
18 C -0.090 4.090
19 C -0.149 4.149
20 C 0.066 3.934
21 O -0.399 6.399
22 C 0.059 3.941
23 C -0.143 4.143
24 C -0.167 4.167
25 C -0.193 4.193
26 H 0.250 0.750
27 H 0.039 0.961
28 H 0.004 0.996
29 H 0.332 0.668
30 H 0.079 0.921
31 H 0.121 0.879
32 H 0.410 0.590
33 H 0.396 0.604
34 H 0.073 0.927
35 H 0.068 0.932
36 H 0.063 0.937
37 H 0.047 0.953
38 H 0.105 0.895
39 H 0.046 0.954
40 H 0.113 0.887
41 H 0.086 0.914
42 H 0.075 0.925
43 H 0.072 0.928
44 H 0.056 0.944
45 H 0.088 0.912
46 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.663 -8.645 14.772 17.128
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.160 4.160
3 Si 0.760 3.240
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.220 1.220
7 C -0.497 4.497
8 H 0.054 0.946
9 C 0.021 3.979
10 C -0.003 4.003
11 N -0.281 5.281
12 C -0.003 4.003
13 H 0.063 0.937
14 C -0.167 4.167
15 C 0.298 3.702
16 N -0.423 5.423
17 O -0.423 6.423
18 C -0.109 4.109
19 C -0.187 4.187
20 C -0.011 4.011
21 O -0.319 6.319
22 C -0.018 4.018
23 C -0.181 4.181
24 C -0.205 4.205
25 C -0.231 4.231
26 H 0.059 0.941
27 H 0.057 0.943
28 H 0.022 0.978
29 H 0.152 0.848
30 H 0.098 0.902
31 H 0.139 0.861
32 H 0.240 0.760
33 H 0.226 0.774
34 H 0.092 0.908
35 H 0.086 0.914
36 H 0.082 0.918
37 H 0.065 0.935
38 H 0.123 0.877
39 H 0.064 0.936
40 H 0.131 0.869
41 H 0.105 0.895
42 H 0.094 0.906
43 H 0.091 0.909
44 H 0.074 0.926
45 H 0.107 0.893
46 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.317 -8.203 14.579 16.731
hybrid contribution 0.087 1.130 -0.567 1.267
sum -0.230 -7.073 14.012 15.698
Atomic orbital electron populations
1.70083 1.06362 1.25696 1.52275 1.25251 0.95230 1.00433 0.95090
0.85927 0.79265 0.82135 0.76628 1.20367 1.20986 1.21953 1.20269
0.91456 0.89958 1.48035 0.94597 1.19064 0.97903 0.93431 0.87467
1.21204 0.95037 0.93364 0.90720 1.60197 1.04291 1.62501 1.01145
1.21312 0.94858 0.93441 0.90725 0.93689 1.21788 0.98693 0.93643
1.02580 1.20805 0.87060 0.85820 0.76556 1.43830 1.21139 1.20091
1.57198 1.90725 1.21404 1.81272 1.48928 1.21389 0.96324 0.98011
0.95198 1.22196 0.98444 0.98974 0.99066 1.22560 0.94282 0.99220
0.85004 1.87870 1.67874 1.39290 1.36827 1.22705 0.91530 0.92861
0.94663 1.22250 0.98754 1.01385 0.95708 1.22430 0.93912 1.01736
1.02429 1.23054 0.96964 0.96344 1.06694 0.94065 0.94262 0.97809
0.84805 0.90239 0.86090 0.75991 0.77390 0.90848 0.91363 0.91799
0.93491 0.87727 0.93580 0.86912 0.89532 0.90596 0.90940 0.92566
0.89329 0.90841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -52.68 13.09 21.45 0.28 -52.40 16
2 C 0.04 2.23 5.42 84.66 0.46 2.68 16
3 Si 0.93 47.15 29.54 68.60 2.03 49.18 16
4 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16
5 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16
6 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16
7 C -0.46 -25.78 8.14 25.60 0.21 -25.57 16
8 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16
9 C 0.02 1.08 1.58 -52.91 -0.08 0.99 16
10 C 0.13 5.58 5.65 86.30 0.49 6.06 16
11 N -0.65 -26.47 4.10 -491.59 -2.01 -28.48 16
12 C 0.11 3.34 1.84 44.91 0.08 3.42 16
13 H 0.05 1.34 7.66 -2.39 -0.02 1.32 16
14 C -0.13 -3.56 5.36 29.85 0.16 -3.40 16
15 C 0.51 17.04 7.58 87.66 0.66 17.71 16
16 N -0.86 -21.07 8.87 -173.54 -1.54 -22.61 16
17 O -0.55 -23.70 13.93 -3.02 -0.04 -23.74 16
18 C -0.09 -2.47 1.68 -10.67 -0.02 -2.49 16
19 C -0.15 -3.93 5.14 30.69 0.16 -3.77 16
20 C 0.07 1.56 6.84 72.01 0.49 2.05 16
21 O -0.40 -9.71 10.77 -148.98 -1.60 -11.32 16
22 C 0.06 1.17 6.84 72.01 0.49 1.66 16
23 C -0.14 -2.91 4.97 30.69 0.15 -2.76 16
24 C -0.17 -7.87 9.68 30.59 0.30 -7.58 16
25 C -0.19 -8.28 9.89 30.62 0.30 -7.97 16
26 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16
27 H 0.04 1.93 7.95 -2.38 -0.02 1.91 16
28 H 0.00 0.17 7.74 -2.38 -0.02 0.15 16
29 H 0.33 13.85 6.16 -89.69 -0.55 13.30 16
30 H 0.08 2.46 7.95 -2.39 -0.02 2.44 16
31 H 0.12 2.30 6.34 -2.39 -0.02 2.29 16
32 H 0.41 6.91 8.83 -92.71 -0.82 6.09 16
33 H 0.40 9.53 8.93 -92.71 -0.83 8.71 16
34 H 0.07 2.45 6.01 -2.39 -0.01 2.43 16
35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
36 H 0.06 1.89 6.37 -2.39 -0.02 1.87 16
37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
38 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16
39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
40 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16
41 H 0.09 1.49 6.55 -2.39 -0.02 1.47 16
42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
43 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16
44 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16
45 H 0.09 3.29 8.08 -2.39 -0.02 3.27 16
46 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16
Total: -1.00 -70.06 360.19 -0.24 -70.30
By element:
Atomic # 1 Polarization: 39.23 SS G_CDS: -1.20 Total: 38.02 kcal
Atomic # 6 Polarization: -22.80 SS G_CDS: 3.86 Total: -18.95 kcal
Atomic # 7 Polarization: -100.22 SS G_CDS: -3.27 Total: -103.50 kcal
Atomic # 8 Polarization: -33.41 SS G_CDS: -1.65 Total: -35.06 kcal
Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal
Total: -70.06 -0.24 -70.30 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602809394.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.497 kcal
(2) G-P(sol) polarization free energy of solvation -70.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds