Wall clock time and date at job start Tue Mar 31 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47099 * 2 1 4 4 C 1.42899 * 114.00273 * 179.97438 * 3 2 1 5 5 C 1.50689 * 109.47382 * 180.02562 * 4 3 2 6 6 C 1.35351 * 126.75183 * 359.97438 * 5 4 3 7 7 N 1.35317 * 106.17806 * 179.74051 * 6 5 4 8 8 C 1.46493 * 125.86822 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47404 * 155.00227 * 8 7 6 10 10 C 1.52997 * 109.47439 * 35.00177 * 8 7 6 11 11 C 1.50704 * 109.47394 * 274.99796 * 8 7 6 12 12 O 1.21278 * 119.99794 * 13.92629 * 11 8 7 13 13 N 1.34777 * 120.00250 * 193.92182 * 11 8 7 14 14 C 1.46498 * 120.00020 * 3.70656 * 13 11 8 15 15 C 1.46505 * 119.99709 * 183.69896 * 13 11 8 16 16 C 1.50700 * 109.46614 * 90.00638 * 15 13 11 17 17 H 1.07992 * 120.00252 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99672 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99653 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47361 * 60.00313 * 20 18 16 22 22 H 1.48506 * 109.46726 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47210 * 299.99878 * 20 18 16 24 24 N 1.28713 * 108.26126 * 0.02562 * 7 6 5 25 25 N 1.28637 * 110.18119 * 359.97438 * 24 7 6 26 26 H 1.08996 * 109.47217 * 300.00106 * 1 2 3 27 27 H 1.09001 * 109.47025 * 60.00221 * 1 2 3 28 28 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47217 * 239.99894 * 2 1 3 30 30 H 1.09001 * 109.47025 * 119.99779 * 2 1 3 31 31 H 1.08999 * 109.47123 * 60.00065 * 4 3 2 32 32 H 1.09004 * 109.46872 * 300.00543 * 4 3 2 33 33 H 1.08003 * 126.90944 * 359.70227 * 6 5 4 34 34 H 1.09003 * 109.47242 * 295.78125 * 10 8 7 35 35 H 1.08998 * 109.47169 * 55.78004 * 10 8 7 36 36 H 1.09004 * 109.47246 * 175.78486 * 10 8 7 37 37 H 1.09005 * 109.47125 * 84.68879 * 14 13 11 38 38 H 1.08998 * 109.47055 * 204.69336 * 14 13 11 39 39 H 1.09001 * 109.47023 * 324.68986 * 14 13 11 40 40 H 1.08998 * 109.46768 * 209.99950 * 15 13 11 41 41 H 1.08996 * 109.47550 * 330.00690 * 15 13 11 42 42 H 0.97005 * 119.99563 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9161 0.0012 6 6 2.9804 3.9783 0.0007 7 7 3.7665 5.0797 0.0074 8 6 3.2988 6.4679 0.0090 9 1 4.0635 7.1085 0.4486 10 6 2.0124 6.5719 0.8306 11 6 3.0279 6.9084 -1.4066 12 8 2.9604 6.0858 -2.2952 13 7 2.8603 8.2164 -1.6850 14 6 3.0219 9.2170 -0.6272 15 6 2.5168 8.6376 -3.0455 16 6 1.0179 8.6722 -3.1971 17 1 0.3845 8.4067 -2.3636 18 6 0.4550 9.0429 -4.4000 19 7 1.2264 9.3658 -5.4151 20 14 -1.4030 9.0851 -4.5881 21 1 -1.9777 10.0455 -3.6121 22 1 -1.7512 9.5121 -5.9672 23 1 -1.9570 7.7309 -4.3350 24 7 4.9957 4.6979 0.0111 25 7 5.0614 3.4132 0.0077 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8340 0.9766 -0.8892 32 1 3.8333 0.9767 0.8908 33 1 1.9007 3.9519 -0.0047 34 1 1.2259 5.9907 0.3492 35 1 2.1893 6.1832 1.8334 36 1 1.7053 7.6158 0.8943 37 1 4.0764 9.4752 -0.5293 38 1 2.4512 10.1101 -0.8817 39 1 2.6584 8.8102 0.3164 40 1 2.9239 9.6314 -3.2318 41 1 2.9382 7.9321 -3.7616 42 1 0.8303 9.6270 -6.2612 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:28 Heat of formation + Delta-G solvation = 25.328735 kcal Electronic energy + Delta-G solvation = -24203.734239 eV Core-core repulsion = 20608.087403 eV Total energy + Delta-G solvation = -3595.646836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.14365 -39.43806 -38.16862 -35.27286 -35.05468 -32.78976 -32.48085 -30.89892 -30.46421 -27.89175 -26.80946 -26.19482 -24.75258 -23.34994 -22.92024 -21.37612 -21.22909 -19.04914 -17.24531 -17.03693 -16.65635 -16.60380 -16.35989 -15.55359 -15.22809 -15.04557 -14.68837 -14.51413 -14.06672 -13.80092 -13.63692 -13.11469 -12.76750 -12.67237 -12.49132 -12.25731 -12.20806 -11.87055 -11.77265 -11.71733 -11.49657 -11.33945 -11.28600 -10.99740 -10.71793 -10.66520 -10.31353 -10.23882 -9.84153 -9.77377 -9.16003 -8.84654 -8.52515 -7.87291 -6.13615 -4.19813 1.76534 2.35446 2.63996 3.00303 3.25320 3.30224 3.30894 3.33036 3.68248 4.33676 4.39703 4.61477 4.66216 4.73984 4.84687 4.95004 5.06367 5.14958 5.17532 5.20988 5.21533 5.33927 5.36124 5.41501 5.48930 5.59026 5.71725 5.72853 5.77875 5.93346 5.94852 6.08643 6.18684 6.66274 6.88115 7.02230 7.28184 7.34586 7.80664 8.09546 8.12515 8.64582 8.67149 8.85483 9.45530 10.94571 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.004117 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.429505 B = 6799.130769 C = 8075.329082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.387 6.387 4 C 0.160 3.840 5 C -0.041 4.041 6 C 0.006 3.994 7 N -0.270 5.270 8 C 0.121 3.879 9 H 0.130 0.870 10 C -0.162 4.162 11 C 0.498 3.502 12 O -0.521 6.521 13 N -0.591 5.591 14 C 0.069 3.931 15 C 0.246 3.754 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 N -0.082 5.082 25 N -0.263 5.263 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.190 0.810 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 -10.611 15.682 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.306 6.306 4 C 0.081 3.919 5 C -0.178 4.178 6 C -0.145 4.145 7 N -0.063 5.063 8 C 0.015 3.985 9 H 0.148 0.852 10 C -0.220 4.220 11 C 0.281 3.719 12 O -0.397 6.397 13 N -0.323 5.323 14 C -0.075 4.075 15 C 0.127 3.873 16 C -0.572 4.572 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 N -0.061 5.061 25 N -0.132 5.132 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.207 0.793 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.625 -10.316 14.981 18.262 hybrid contribution -2.023 -0.180 -0.288 2.051 sum -0.398 -10.497 14.693 18.062 Atomic orbital electron populations 1.21752 0.93594 1.02219 1.03418 1.22455 0.95661 0.83262 1.00227 1.87829 1.20302 1.26877 1.95544 1.20129 0.81260 0.89179 1.01306 1.21405 0.90066 0.96071 1.10265 1.23163 1.00182 0.84870 1.06312 1.46908 1.05270 1.07663 1.46444 1.21693 1.00238 0.78443 0.98129 0.85202 1.22219 0.94665 1.05539 0.99585 1.19995 0.79234 0.83933 0.88749 1.90763 1.50349 1.51582 1.47005 1.48097 1.67059 1.04124 1.13027 1.21933 1.01038 0.93915 0.90577 1.19392 0.96025 0.96011 0.75847 1.21345 0.91340 1.46591 0.97887 0.92393 1.24940 0.98559 0.94980 0.95489 1.69921 1.35274 1.45160 1.02684 0.86537 0.84993 0.78538 0.77243 1.20151 1.21073 1.20142 1.78241 1.00874 1.07024 1.19935 1.74914 1.20668 1.00286 1.17303 0.91817 0.91568 0.91109 0.93119 0.93270 0.91337 0.91499 0.79305 0.90235 0.90359 0.88199 0.93112 0.89815 0.92091 0.94514 0.93671 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.39 -4.70 9.73 -35.23 -0.34 -5.05 16 4 C 0.16 1.95 6.56 36.00 0.24 2.19 16 5 C -0.04 -0.64 7.22 -82.78 -0.60 -1.24 16 6 C 0.01 0.09 9.83 -17.04 -0.17 -0.07 16 7 N -0.27 -4.55 2.85 -55.89 -0.16 -4.70 16 8 C 0.12 1.79 2.82 -69.09 -0.19 1.60 16 9 H 0.13 1.58 7.48 -51.92 -0.39 1.20 16 10 C -0.16 -1.80 8.47 37.16 0.31 -1.48 16 11 C 0.50 10.05 6.97 -10.98 -0.08 9.98 16 12 O -0.52 -13.23 15.88 5.56 0.09 -13.14 16 13 N -0.59 -11.80 2.86 -182.95 -0.52 -12.32 16 14 C 0.07 0.96 9.86 59.85 0.59 1.55 16 15 C 0.25 6.23 5.16 -5.19 -0.03 6.21 16 16 C -0.53 -14.52 9.39 -34.44 -0.32 -14.85 16 17 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 N -0.08 -1.51 13.16 60.35 0.79 -0.72 16 25 N -0.26 -4.75 12.41 33.29 0.41 -4.33 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.19 2.69 7.30 -52.48 -0.38 2.31 16 34 H 0.08 0.96 7.40 -51.93 -0.38 0.58 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.96 5.80 -51.93 -0.30 0.66 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.19 8.03 -51.93 -0.42 0.78 16 39 H 0.06 0.64 4.56 -51.93 -0.24 0.40 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -35.43 355.12 -4.64 -40.07 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.26 Total: -1.53 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 0.29 Total: 5.49 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 1.26 Total: -47.40 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.25 Total: -18.18 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.43 -4.64 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.399 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds