Wall clock time and date at job start Tue Mar 31 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00262 * 2 1 4 4 C 1.52997 * 109.46935 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47000 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 11 11 C 1.53001 * 109.47207 * 299.99218 * 9 7 6 12 12 N 1.46509 * 109.47002 * 179.97438 * 9 7 6 13 13 C 1.35316 * 125.86911 * 84.99533 * 12 9 7 14 14 C 1.35350 * 106.17414 * 180.02562 * 13 12 9 15 15 C 1.50697 * 126.75038 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47196 * 125.00053 * 15 14 13 17 17 H 1.07999 * 119.99826 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00140 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00033 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47340 * 60.00485 * 20 18 16 22 22 H 1.48512 * 109.46917 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47367 * 300.00087 * 20 18 16 24 24 N 1.33776 * 106.49544 * 0.02562 * 14 13 12 25 25 N 1.28636 * 108.88415 * 359.73186 * 24 14 13 26 26 H 1.09001 * 109.47697 * 59.99737 * 1 2 3 27 27 H 1.09008 * 109.47407 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47302 * 299.99805 * 1 2 3 29 29 H 1.08995 * 109.46706 * 60.00103 * 3 2 1 30 30 H 1.09007 * 109.46697 * 300.00236 * 3 2 1 31 31 H 1.08995 * 109.47672 * 60.00287 * 4 3 2 32 32 H 1.09006 * 109.46819 * 299.99717 * 4 3 2 33 33 H 1.09009 * 109.46730 * 59.99606 * 5 4 3 34 34 H 1.08998 * 109.46846 * 300.00150 * 5 4 3 35 35 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 36 36 H 1.08995 * 109.47475 * 180.02562 * 11 9 7 37 37 H 1.09001 * 109.47406 * 300.00436 * 11 9 7 38 38 H 1.09001 * 109.47038 * 60.00421 * 11 9 7 39 39 H 1.08004 * 126.90935 * 359.97438 * 13 12 9 40 40 H 1.08996 * 109.47004 * 245.00455 * 15 14 13 41 41 H 1.09000 * 109.46940 * 4.99734 * 15 14 13 42 42 H 0.96996 * 120.00248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 7 5.6183 2.4665 -0.0013 7 6 6.3822 3.5768 0.0039 8 8 5.8606 4.6718 0.0034 9 6 7.8844 3.4577 0.0101 10 1 8.2100 2.9183 -0.8793 11 6 8.3305 2.6965 1.2601 12 7 8.4804 4.7961 0.0143 13 6 8.7109 5.5580 1.1086 14 6 9.2670 6.7067 0.6579 15 6 9.7083 7.8823 1.4911 16 6 11.1539 8.1911 1.1984 17 1 11.6988 7.5953 0.4811 18 6 11.7809 9.2342 1.8463 19 7 11.1176 9.9594 2.7201 20 14 13.5727 9.6174 1.4828 21 1 13.7266 9.9454 0.0427 22 1 14.0075 10.7759 2.3040 23 1 14.4087 8.4354 1.8134 24 7 9.3479 6.5931 -0.6725 25 7 8.8786 5.4475 -1.0219 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8568 0.6438 -0.8908 32 1 3.8574 0.6434 0.8892 33 1 3.8365 3.1234 0.8887 34 1 3.8358 3.1229 -0.8913 35 1 6.0354 1.5907 -0.0005 36 1 9.4171 2.6107 1.2648 37 1 8.0051 3.2359 2.1495 38 1 7.8872 1.7007 1.2566 39 1 8.4939 5.3013 2.1350 40 1 9.0950 8.7501 1.2485 41 1 9.5949 7.6415 2.5481 42 1 11.5587 10.6930 3.1762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603190071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:01 Heat of formation + Delta-G solvation = 10.034519 kcal Electronic energy + Delta-G solvation = -23010.629359 eV Core-core repulsion = 19414.319316 eV Total energy + Delta-G solvation = -3596.310043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.55510 -40.09003 -38.50223 -35.92795 -35.24453 -33.35356 -32.45513 -31.17865 -30.20195 -27.64556 -27.50271 -25.83036 -24.67867 -23.30883 -22.38405 -21.81456 -20.45361 -20.04759 -17.91522 -17.27312 -16.88052 -16.78616 -16.17040 -15.88783 -15.72316 -15.22857 -15.05547 -14.74956 -14.45797 -14.04410 -13.91690 -13.25948 -13.00114 -12.74877 -12.65890 -12.48010 -12.38213 -12.16793 -11.91946 -11.65088 -11.63377 -11.60738 -10.95525 -10.67508 -10.62624 -10.36171 -10.21686 -10.00798 -9.63801 -9.53250 -9.37105 -9.23102 -8.36955 -8.04477 -5.93229 -3.93715 2.04017 2.21891 2.52624 2.88447 3.31710 3.42003 3.44822 3.48275 3.59896 4.13289 4.28964 4.36201 4.49187 4.52616 4.55630 4.56171 4.82110 4.84317 4.91336 4.96974 4.99708 5.15646 5.17871 5.19820 5.29744 5.43470 5.51798 5.53640 5.62037 5.89142 5.93126 6.16753 6.35520 6.58792 6.93644 7.19738 7.22607 7.60570 7.70349 7.79583 8.04346 8.43627 9.09350 9.36772 9.68536 11.17891 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.002268 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.479046 B =12345.033559 C =12548.718180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.130 4.130 5 C 0.122 3.878 6 N -0.727 5.727 7 C 0.504 3.496 8 O -0.508 6.508 9 C 0.134 3.866 10 H 0.134 0.866 11 C -0.161 4.161 12 N -0.291 5.291 13 C -0.067 4.067 14 C 0.036 3.964 15 C 0.092 3.908 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.278 1.278 24 N -0.255 5.255 25 N -0.105 5.105 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.403 0.597 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.178 0.822 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 -24.532 -2.060 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.382 5.382 7 C 0.287 3.713 8 O -0.380 6.380 9 C 0.026 3.974 10 H 0.151 0.849 11 C -0.219 4.219 12 N -0.087 5.087 13 C -0.215 4.215 14 C -0.101 4.101 15 C 0.054 3.946 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.204 1.204 24 N -0.122 5.122 25 N -0.083 5.083 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.238 0.762 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.195 0.805 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.315 -23.729 -3.481 30.177 hybrid contribution 0.642 -0.109 1.010 1.201 sum -17.673 -23.838 -2.471 29.777 Atomic orbital electron populations 1.22764 0.80572 1.02943 1.00225 1.87847 1.20080 1.27793 1.95502 1.22375 0.93126 0.84942 1.00948 1.21669 0.94110 0.96741 1.04302 1.21207 0.79176 0.96593 1.03165 1.45802 1.06787 1.08805 1.76757 1.20651 0.89019 0.84758 0.76829 1.90840 1.74163 1.26295 1.46748 1.21221 0.90436 0.81806 1.03944 0.84874 1.22160 1.04212 1.00031 0.95488 1.46640 1.42091 1.13730 1.06229 1.23157 1.10005 0.94426 0.93907 1.22962 0.98565 0.97597 0.90947 1.17721 0.96626 0.87875 0.92404 1.21015 0.95149 1.14646 1.23306 0.92317 1.24977 0.98281 0.96011 0.95195 1.69941 1.36656 1.20032 1.27197 0.86572 0.84910 0.77602 0.78415 1.20119 1.21368 1.20381 1.75044 1.15891 1.07840 1.13469 1.78189 1.15527 1.02238 1.12338 0.93894 0.89466 0.93871 0.92729 0.92763 0.90170 0.90143 0.90923 0.90974 0.76237 0.89538 0.90340 0.89521 0.80484 0.94256 0.94569 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.88 10.70 -35.23 -0.38 -3.26 16 3 C 0.06 0.36 5.94 37.16 0.22 0.58 16 4 C -0.13 -0.65 5.70 -26.73 -0.15 -0.80 16 5 C 0.12 0.86 5.67 -4.04 -0.02 0.83 16 6 N -0.73 -5.29 5.45 -60.29 -0.33 -5.62 16 7 C 0.50 6.05 7.22 -10.99 -0.08 5.97 16 8 O -0.51 -8.94 16.42 5.55 0.09 -8.85 16 9 C 0.13 1.51 3.65 -69.08 -0.25 1.25 16 10 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 11 C -0.16 -1.20 8.73 37.16 0.32 -0.87 16 12 N -0.29 -5.19 2.75 -55.89 -0.15 -5.35 16 13 C -0.07 -1.31 10.59 -17.05 -0.18 -1.49 16 14 C 0.04 0.87 6.44 -82.78 -0.53 0.34 16 15 C 0.09 2.52 5.55 -29.04 -0.16 2.36 16 16 C -0.50 -14.84 9.09 -34.44 -0.31 -15.15 16 17 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 20 Si 0.90 22.45 29.54 -169.99 -5.02 17.42 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 N -0.25 -6.44 12.40 33.29 0.41 -6.03 16 25 N -0.10 -2.29 13.16 60.35 0.79 -1.49 16 26 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.40 1.50 7.89 -40.82 -0.32 1.18 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.64 7.18 -51.93 -0.37 0.27 16 38 H 0.09 0.31 7.56 -51.93 -0.39 -0.09 16 39 H 0.18 2.84 7.30 -52.48 -0.38 2.46 16 40 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -38.94 361.89 -5.03 -43.97 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -6.51 Total: -5.64 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.13 Total: -4.18 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 1.46 Total: -44.93 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.29 Total: -12.11 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.94 -5.03 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603190071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.009 kcal (2) G-P(sol) polarization free energy of solvation -38.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds