Wall clock time and date at job start Tue Mar 31 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00262 * 2 1 4 4 C 1.52997 * 109.46935 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47000 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 11 11 C 1.53001 * 109.47207 * 299.99218 * 9 7 6 12 12 N 1.46509 * 109.47002 * 179.97438 * 9 7 6 13 13 C 1.35316 * 125.86911 * 84.99533 * 12 9 7 14 14 C 1.35350 * 106.17414 * 180.02562 * 13 12 9 15 15 C 1.50697 * 126.75038 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47196 * 125.00053 * 15 14 13 17 17 H 1.07999 * 119.99826 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00140 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00033 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47340 * 60.00485 * 20 18 16 22 22 H 1.48512 * 109.46917 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47367 * 300.00087 * 20 18 16 24 24 N 1.33776 * 106.49544 * 0.02562 * 14 13 12 25 25 N 1.28636 * 108.88415 * 359.73186 * 24 14 13 26 26 H 1.09001 * 109.47697 * 59.99737 * 1 2 3 27 27 H 1.09008 * 109.47407 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47302 * 299.99805 * 1 2 3 29 29 H 1.08995 * 109.46706 * 60.00103 * 3 2 1 30 30 H 1.09007 * 109.46697 * 300.00236 * 3 2 1 31 31 H 1.08995 * 109.47672 * 60.00287 * 4 3 2 32 32 H 1.09006 * 109.46819 * 299.99717 * 4 3 2 33 33 H 1.09009 * 109.46730 * 59.99606 * 5 4 3 34 34 H 1.08998 * 109.46846 * 300.00150 * 5 4 3 35 35 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 36 36 H 1.08995 * 109.47475 * 180.02562 * 11 9 7 37 37 H 1.09001 * 109.47406 * 300.00436 * 11 9 7 38 38 H 1.09001 * 109.47038 * 60.00421 * 11 9 7 39 39 H 1.08004 * 126.90935 * 359.97438 * 13 12 9 40 40 H 1.08996 * 109.47004 * 245.00455 * 15 14 13 41 41 H 1.09000 * 109.46940 * 4.99734 * 15 14 13 42 42 H 0.96996 * 120.00248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 7 5.6183 2.4665 -0.0013 7 6 6.3822 3.5768 0.0039 8 8 5.8606 4.6718 0.0034 9 6 7.8844 3.4577 0.0101 10 1 8.2100 2.9183 -0.8793 11 6 8.3305 2.6965 1.2601 12 7 8.4804 4.7961 0.0143 13 6 8.7109 5.5580 1.1086 14 6 9.2670 6.7067 0.6579 15 6 9.7083 7.8823 1.4911 16 6 11.1539 8.1911 1.1984 17 1 11.6988 7.5953 0.4811 18 6 11.7809 9.2342 1.8463 19 7 11.1176 9.9594 2.7201 20 14 13.5727 9.6174 1.4828 21 1 13.7266 9.9454 0.0427 22 1 14.0075 10.7759 2.3040 23 1 14.4087 8.4354 1.8134 24 7 9.3479 6.5931 -0.6725 25 7 8.8786 5.4475 -1.0219 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8568 0.6438 -0.8908 32 1 3.8574 0.6434 0.8892 33 1 3.8365 3.1234 0.8887 34 1 3.8358 3.1229 -0.8913 35 1 6.0354 1.5907 -0.0005 36 1 9.4171 2.6107 1.2648 37 1 8.0051 3.2359 2.1495 38 1 7.8872 1.7007 1.2566 39 1 8.4939 5.3013 2.1350 40 1 9.0950 8.7501 1.2485 41 1 9.5949 7.6415 2.5481 42 1 11.5587 10.6930 3.1762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603190071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:01 Heat of formation + Delta-G solvation = -20.644174 kcal Electronic energy + Delta-G solvation = -23011.959687 eV Core-core repulsion = 19414.319316 eV Total energy + Delta-G solvation = -3597.640371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.14871 -41.06456 -38.97382 -36.74641 -36.44998 -35.37695 -33.35567 -32.91382 -31.39070 -29.50416 -28.07431 -26.51162 -25.62355 -25.32802 -23.21172 -22.73373 -22.14317 -21.19643 -18.92986 -18.54501 -18.15042 -17.49731 -17.36010 -16.84252 -16.62959 -16.48177 -16.28888 -15.80855 -15.55057 -15.28432 -14.87960 -14.54491 -14.23943 -14.05892 -13.65697 -13.45438 -13.40879 -13.01770 -12.99886 -12.76713 -12.69806 -12.61990 -12.47902 -12.09555 -12.06747 -11.95261 -11.71552 -11.49816 -11.37085 -10.74591 -10.64740 -10.57352 -10.29972 -9.86424 -8.17225 -6.26616 0.62964 1.28904 1.32396 1.41233 1.45651 1.53324 1.75881 1.97342 2.45759 2.83000 3.15029 3.35249 3.45500 3.68837 3.72597 3.92947 4.00592 4.14127 4.22647 4.39913 4.40759 4.48701 4.50706 4.55039 4.58184 4.59119 4.67072 4.74944 4.86397 5.04007 5.07288 5.09556 5.24884 5.27351 5.43011 5.52251 5.72520 5.77233 6.17938 6.22429 6.31671 6.81182 6.99835 7.39770 7.66969 8.93798 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.002268 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.479046 B =12345.033559 C =12548.718180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.058 3.942 4 C -0.117 4.117 5 C 0.123 3.877 6 N -0.699 5.699 7 C 0.507 3.493 8 O -0.573 6.573 9 C 0.120 3.880 10 H 0.164 0.836 11 C -0.157 4.157 12 N -0.273 5.273 13 C -0.039 4.039 14 C -0.007 4.007 15 C 0.103 3.897 16 C -0.523 4.523 17 H 0.047 0.953 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.966 3.034 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.266 1.266 24 N -0.303 5.303 25 N -0.115 5.115 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.425 0.575 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.215 0.785 40 H 0.004 0.996 41 H 0.033 0.967 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.024 -27.661 -1.607 33.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.001 4.001 6 N -0.353 5.353 7 C 0.291 3.709 8 O -0.451 6.451 9 C 0.015 3.985 10 H 0.181 0.819 11 C -0.215 4.215 12 N -0.069 5.069 13 C -0.189 4.189 14 C -0.145 4.145 15 C 0.064 3.936 16 C -0.562 4.562 17 H 0.066 0.934 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.790 3.210 21 H -0.202 1.202 22 H -0.201 1.201 23 H -0.190 1.190 24 N -0.170 5.170 25 N -0.093 5.093 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.231 0.769 40 H 0.022 0.978 41 H 0.052 0.948 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.160 -26.963 -3.048 32.651 hybrid contribution 0.419 0.698 0.863 1.186 sum -17.740 -26.266 -2.185 31.771 Atomic orbital electron populations 1.22921 0.79508 1.03862 1.00804 1.87802 1.21385 1.28498 1.95634 1.22451 0.93575 0.84627 1.01243 1.21539 0.93482 0.95205 1.05222 1.21218 0.78758 0.97842 1.02263 1.45587 1.06806 1.08668 1.74249 1.20731 0.89329 0.84745 0.76097 1.90836 1.75170 1.28809 1.50280 1.21969 0.89920 0.78945 1.07627 0.81880 1.22296 1.04638 1.01686 0.92836 1.47081 1.39890 1.15198 1.04684 1.23452 1.07007 0.92785 0.95684 1.22638 1.01943 0.98800 0.91089 1.17384 0.95310 0.88169 0.92737 1.21237 0.96348 1.15175 1.23395 0.93432 1.25850 1.03000 0.95567 0.94775 1.70049 1.38565 1.20394 1.27831 0.85493 0.79295 0.78034 0.78132 1.20164 1.20111 1.19043 1.74941 1.17987 1.09863 1.14223 1.78020 1.16070 1.01749 1.13504 0.93366 0.88465 0.93267 0.92411 0.92650 0.89383 0.88991 0.91698 0.92234 0.73641 0.89397 0.90808 0.84624 0.76878 0.97811 0.94837 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -5.36 10.70 -148.98 -1.59 -6.95 16 3 C 0.06 0.57 5.94 71.98 0.43 1.00 16 4 C -0.12 -0.86 5.70 30.59 0.17 -0.69 16 5 C 0.12 1.49 5.67 86.38 0.49 1.98 16 6 N -0.70 -8.03 5.45 -463.05 -2.52 -10.55 16 7 C 0.51 11.09 7.22 87.66 0.63 11.73 16 8 O -0.57 -20.03 16.42 -3.04 -0.05 -20.08 16 9 C 0.12 2.36 3.65 44.24 0.16 2.52 16 10 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 11 C -0.16 -1.66 8.73 71.98 0.63 -1.03 16 12 N -0.27 -9.43 2.75 -330.72 -0.91 -10.34 16 13 C -0.04 -1.52 10.59 83.49 0.88 -0.64 16 14 C -0.01 -0.36 6.44 41.59 0.27 -0.09 16 15 C 0.10 5.87 5.55 29.10 0.16 6.03 16 16 C -0.52 -31.85 9.09 25.60 0.23 -31.62 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 18 C 0.01 0.36 5.46 84.65 0.46 0.83 16 19 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 20 Si 0.97 46.39 29.54 68.60 2.03 48.42 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 N -0.30 -15.84 12.40 -48.60 -0.60 -16.44 16 25 N -0.12 -5.05 13.16 37.02 0.49 -4.57 16 26 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.42 1.20 7.89 -92.71 -0.73 0.47 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.92 7.18 -2.39 -0.02 0.90 16 38 H 0.14 0.13 7.56 -2.39 -0.02 0.11 16 39 H 0.21 6.43 7.30 -2.91 -0.02 6.41 16 40 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.03 1.87 8.12 -2.39 -0.02 1.85 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -89.33 361.89 3.18 -86.15 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: 0.29 Total: -0.24 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.77 Total: -8.53 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -3.26 Total: -98.76 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.64 Total: -27.03 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -89.33 3.18 -86.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603190071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.504 kcal (2) G-P(sol) polarization free energy of solvation -89.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds