Wall clock time and date at job start Tue Mar 31 2020 03:21:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86797 * 120.00214 * 2 1
4 4 H 1.48503 * 109.47119 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47217 * 299.99470 * 3 2 1
6 6 H 1.48497 * 109.47254 * 59.99973 * 3 2 1
7 7 C 1.38815 * 119.99644 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00217 * 163.07510 * 7 2 1
9 9 N 1.36939 * 120.00086 * 343.07054 * 7 2 1
10 10 C 1.46924 * 120.62813 * 331.85289 * 9 7 2
11 11 C 1.53197 * 108.77358 * 233.58392 * 10 9 7
12 12 C 1.53041 * 109.31430 * 305.36850 * 11 10 9
13 13 N 1.46500 * 109.46194 * 181.38417 * 12 11 10
14 14 C 1.34778 * 120.00167 * 154.96887 * 13 12 11
15 15 O 1.21288 * 119.99632 * 0.02562 * 14 13 12
16 16 C 1.50701 * 120.00120 * 179.97438 * 14 13 12
17 17 C 1.52994 * 109.47149 * 180.02562 * 16 14 13
18 18 O 1.42896 * 109.47177 * 179.97438 * 17 16 14
19 19 C 1.42901 * 114.00077 * 180.02562 * 18 17 16
20 20 C 1.52995 * 109.47213 * 180.02562 * 19 18 17
21 21 C 1.53003 * 117.49745 * 243.62257 * 20 19 18
22 22 C 1.53000 * 60.00202 * 252.50601 * 21 20 19
23 23 C 1.53034 * 109.52885 * 61.36900 * 12 11 10
24 24 C 1.46924 * 120.63189 * 151.82705 * 9 7 2
25 25 H 0.97003 * 119.99530 * 0.02562 * 1 2 3
26 26 H 1.08997 * 109.58633 * 113.80446 * 10 9 7
27 27 H 1.09000 * 109.70898 * 353.43868 * 10 9 7
28 28 H 1.08993 * 109.49958 * 185.41148 * 11 10 9
29 29 H 1.09005 * 109.49616 * 65.31682 * 11 10 9
30 30 H 1.09002 * 109.45656 * 301.35608 * 12 11 10
31 31 H 0.97002 * 119.99816 * 334.97132 * 13 12 11
32 32 H 1.09000 * 109.46788 * 60.00347 * 16 14 13
33 33 H 1.08993 * 109.47027 * 300.00378 * 16 14 13
34 34 H 1.09002 * 109.47183 * 59.99951 * 17 16 14
35 35 H 1.09001 * 109.47508 * 300.00400 * 17 16 14
36 36 H 1.09002 * 109.47122 * 59.99920 * 19 18 17
37 37 H 1.09004 * 109.46926 * 300.00028 * 19 18 17
38 38 H 1.08997 * 115.55451 * 29.32158 * 20 19 18
39 39 H 1.09009 * 117.49932 * 359.97438 * 21 20 19
40 40 H 1.09002 * 117.50045 * 145.01770 * 21 20 19
41 41 H 1.08996 * 117.50063 * 252.51172 * 22 21 20
42 42 H 1.09004 * 117.49960 * 107.48352 * 22 21 20
43 43 H 1.09006 * 109.49649 * 58.57931 * 23 12 11
44 44 H 1.08996 * 109.50410 * 178.67802 * 23 12 11
45 45 H 1.09000 * 109.58998 * 246.20377 * 24 9 7
46 46 H 1.09004 * 109.58514 * 6.48896 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8916 2.3964 -1.2126
6 1 1.8915 2.3964 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0550 -1.2227 -0.2717
9 7 1.3699 -2.3623 0.3464
10 6 0.2259 -2.3397 1.2680
11 6 0.4972 -3.3187 2.4147
12 6 0.8117 -4.7005 1.8368
13 7 1.0392 -5.6471 2.9315
14 6 0.8352 -6.9650 2.7362
15 8 0.4637 -7.3672 1.6539
16 6 1.0698 -7.9388 3.8621
17 6 0.7681 -9.3589 3.3793
18 8 0.9911 -10.2823 4.4468
19 6 0.7372 -11.6449 4.0991
20 6 1.0066 -12.5392 5.3109
21 6 2.1372 -13.5636 5.1956
22 6 0.6795 -14.0279 5.1771
23 6 2.0672 -4.6170 0.9658
24 6 1.8136 -3.6530 -0.1975
25 1 -0.4849 0.8401 -0.0004
26 1 -0.6772 -2.6404 0.7369
27 1 0.0965 -1.3344 1.6688
28 1 -0.3834 -3.3835 3.0538
29 1 1.3469 -2.9671 2.9999
30 1 -0.0284 -5.0406 1.2313
31 1 1.3367 -5.3254 3.7969
32 1 0.4154 -7.6921 4.6981
33 1 2.1093 -7.8781 4.1842
34 1 1.4228 -9.6053 2.5434
35 1 -0.2713 -9.4199 3.0568
36 1 1.3914 -11.9383 3.2780
37 1 -0.3029 -11.7537 3.7917
38 1 0.8458 -12.0741 6.2835
39 1 2.6889 -13.6007 4.2562
40 1 2.7206 -13.7724 6.0924
41 1 0.3038 -14.5421 6.0617
42 1 0.2723 -14.3701 4.2257
43 1 2.9020 -4.2530 1.5648
44 1 2.3043 -5.6059 0.5734
45 1 1.0400 -4.0607 -0.8482
46 1 2.7330 -3.5133 -0.7661
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610577411.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:57
Heat of formation + Delta-G solvation = -50.058333 kcal
Electronic energy + Delta-G solvation = -23475.402606 eV
Core-core repulsion = 19980.027085 eV
Total energy + Delta-G solvation = -3495.375521 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-39.85410 -38.68903 -37.43602 -36.78106 -34.43356 -32.41676 -31.61725 -30.10970
-29.34210 -27.29244 -25.19481 -23.66058 -22.78765 -22.26521 -21.75190 -21.03477
-20.12082 -19.23270 -17.60790 -16.87269 -16.59499 -16.27735 -15.80864 -15.53023
-15.07696 -14.76111 -14.65618 -13.89053 -13.62066 -13.57590 -13.46549 -13.35595
-12.94779 -12.58130 -12.38025 -11.98272 -11.78859 -11.72879 -11.47003 -11.32107
-11.14126 -10.87076 -10.84245 -10.74499 -10.55986 -10.48908 -10.28516 -10.04817
-9.89498 -9.76612 -9.71403 -9.47741 -8.73483 -8.47208 -6.69546 -5.80734
-3.22999 2.73488 2.91795 3.35549 3.37601 3.44143 3.46397 3.72299
4.41036 4.48410 4.48524 4.62830 4.68182 4.85423 4.92679 5.05143
5.16449 5.21974 5.27947 5.30915 5.34620 5.44641 5.46931 5.50552
5.57114 5.59208 5.65927 5.68748 5.80753 5.86485 6.06561 6.25871
6.32633 6.51964 6.54422 6.58199 6.78638 6.89758 6.93365 6.98214
7.30389 7.57863 7.69852 7.79239 8.35345 8.43485 9.19635 9.82789
10.39861 11.28223
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.056335 B = 0.002095 C = 0.002087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 496.910363 B =13361.800558 C =13415.320774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.001 3.999
3 Si 0.902 3.098
4 H -0.278 1.278
5 H -0.290 1.290
6 H -0.289 1.289
7 C -0.251 4.251
8 H 0.066 0.934
9 N -0.593 5.593
10 C 0.174 3.826
11 C -0.147 4.147
12 C 0.150 3.850
13 N -0.722 5.722
14 C 0.514 3.486
15 O -0.546 6.546
16 C -0.140 4.140
17 C 0.079 3.921
18 O -0.390 6.390
19 C 0.095 3.905
20 C -0.154 4.154
21 C -0.178 4.178
22 C -0.175 4.175
23 C -0.139 4.139
24 C 0.147 3.853
25 H 0.253 0.747
26 H 0.021 0.979
27 H 0.092 0.908
28 H 0.054 0.946
29 H 0.060 0.940
30 H 0.082 0.918
31 H 0.397 0.603
32 H 0.100 0.900
33 H 0.100 0.900
34 H 0.058 0.942
35 H 0.058 0.942
36 H 0.051 0.949
37 H 0.054 0.946
38 H 0.114 0.886
39 H 0.095 0.905
40 H 0.096 0.904
41 H 0.098 0.902
42 H 0.095 0.905
43 H 0.058 0.942
44 H 0.054 0.946
45 H 0.020 0.980
46 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.713 -21.985 12.010 25.110
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.197 4.197
3 Si 0.732 3.268
4 H -0.203 1.203
5 H -0.217 1.217
6 H -0.216 1.216
7 C -0.381 4.381
8 H 0.084 0.916
9 N -0.316 5.316
10 C 0.047 3.953
11 C -0.187 4.187
12 C 0.047 3.953
13 N -0.372 5.372
14 C 0.300 3.700
15 O -0.423 6.423
16 C -0.180 4.180
17 C 0.002 3.998
18 O -0.310 6.310
19 C 0.018 3.982
20 C -0.172 4.172
21 C -0.215 4.215
22 C -0.212 4.212
23 C -0.179 4.179
24 C 0.020 3.980
25 H 0.063 0.937
26 H 0.039 0.961
27 H 0.110 0.890
28 H 0.073 0.927
29 H 0.079 0.921
30 H 0.100 0.900
31 H 0.231 0.769
32 H 0.118 0.882
33 H 0.118 0.882
34 H 0.076 0.924
35 H 0.076 0.924
36 H 0.069 0.931
37 H 0.072 0.928
38 H 0.132 0.868
39 H 0.114 0.886
40 H 0.114 0.886
41 H 0.116 0.884
42 H 0.114 0.886
43 H 0.077 0.923
44 H 0.072 0.928
45 H 0.038 0.962
46 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 1.403 -22.051 11.378 24.853
hybrid contribution 0.474 0.956 0.243 1.094
sum 1.876 -21.095 11.621 24.157
Atomic orbital electron populations
1.70036 1.05259 1.25421 1.54050 1.25063 0.95305 0.98454 1.00906
0.86223 0.79361 0.83916 0.77272 1.20263 1.21719 1.21575 1.19238
0.92604 0.84745 1.41520 0.91590 1.44100 1.35815 1.01659 1.49980
1.20742 0.88905 0.97934 0.87681 1.22538 1.00554 0.94723 1.00837
1.21060 0.98525 0.88271 0.87456 1.46336 1.68479 1.06471 1.15941
1.20336 0.77311 0.83276 0.89124 1.90714 1.46554 1.78360 1.26715
1.21479 1.04937 0.93201 0.98377 1.22113 1.01017 0.87572 0.89080
1.87782 1.89816 1.15801 1.37561 1.21974 0.99645 0.81303 0.95253
1.22154 1.04389 0.90414 1.00216 1.23084 0.91438 1.03450 1.03527
1.22982 0.98837 0.95828 1.03540 1.22372 0.97149 0.99510 0.98880
1.20876 0.97910 0.86552 0.92639 0.93650 0.96116 0.89007 0.92725
0.92144 0.90038 0.76934 0.88204 0.88186 0.92377 0.92353 0.93071
0.92780 0.86814 0.88616 0.88588 0.88379 0.88613 0.92309 0.92774
0.96203 0.92543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.02 11.19 55.49 0.62 -25.40 16
2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16
3 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16
4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
7 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16
8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16
9 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16
10 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16
11 C -0.15 -2.65 5.55 -26.61 -0.15 -2.80 16
12 C 0.15 2.59 2.42 -67.89 -0.16 2.42 16
13 N -0.72 -9.82 5.08 -53.77 -0.27 -10.09 16
14 C 0.51 7.17 7.79 -10.98 -0.09 7.08 16
15 O -0.55 -9.78 15.65 5.55 0.09 -9.69 16
16 C -0.14 -1.43 6.07 -27.89 -0.17 -1.60 16
17 C 0.08 0.86 5.23 37.15 0.19 1.06 16
18 O -0.39 -4.20 10.34 -35.23 -0.36 -4.57 16
19 C 0.09 0.83 6.22 37.16 0.23 1.06 16
20 C -0.15 -1.17 6.06 -90.62 -0.55 -1.72 16
21 C -0.18 -1.15 10.18 -26.73 -0.27 -1.43 16
22 C -0.17 -1.04 10.25 -26.73 -0.27 -1.32 16
23 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16
24 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16
25 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16
28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
30 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16
31 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16
32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16
35 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16
36 H 0.05 0.42 7.88 -51.93 -0.41 0.01 16
37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16
39 H 0.10 0.60 8.03 -51.92 -0.42 0.18 16
40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16
41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16
43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16
45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
46 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16
LS Contribution 372.21 15.07 5.61 5.61
Total: -1.00 -31.42 372.21 -9.71 -41.13
By element:
Atomic # 1 Polarization: 9.81 SS G_CDS: -8.18 Total: 1.62 kcal
Atomic # 6 Polarization: 1.88 SS G_CDS: -1.66 Total: 0.22 kcal
Atomic # 7 Polarization: -50.62 SS G_CDS: -0.17 Total: -50.79 kcal
Atomic # 8 Polarization: -13.98 SS G_CDS: -0.28 Total: -14.26 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -31.42 -9.71 -41.13 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610577411.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.932 kcal
(2) G-P(sol) polarization free energy of solvation -31.417 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds