Wall clock time and date at job start Tue Mar 31 2020 03:21:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86797 * 120.00214 * 2 1
4 4 H 1.48503 * 109.47119 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47217 * 299.99470 * 3 2 1
6 6 H 1.48497 * 109.47254 * 59.99973 * 3 2 1
7 7 C 1.38815 * 119.99644 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00217 * 163.07510 * 7 2 1
9 9 N 1.36939 * 120.00086 * 343.07054 * 7 2 1
10 10 C 1.46924 * 120.62813 * 331.85289 * 9 7 2
11 11 C 1.53197 * 108.77358 * 233.58392 * 10 9 7
12 12 C 1.53041 * 109.31430 * 305.36850 * 11 10 9
13 13 N 1.46500 * 109.46194 * 181.38417 * 12 11 10
14 14 C 1.34778 * 120.00167 * 154.96887 * 13 12 11
15 15 O 1.21288 * 119.99632 * 0.02562 * 14 13 12
16 16 C 1.50701 * 120.00120 * 179.97438 * 14 13 12
17 17 C 1.52994 * 109.47149 * 180.02562 * 16 14 13
18 18 O 1.42896 * 109.47177 * 179.97438 * 17 16 14
19 19 C 1.42901 * 114.00077 * 180.02562 * 18 17 16
20 20 C 1.52995 * 109.47213 * 180.02562 * 19 18 17
21 21 C 1.53003 * 117.49745 * 243.62257 * 20 19 18
22 22 C 1.53000 * 60.00202 * 252.50601 * 21 20 19
23 23 C 1.53034 * 109.52885 * 61.36900 * 12 11 10
24 24 C 1.46924 * 120.63189 * 151.82705 * 9 7 2
25 25 H 0.97003 * 119.99530 * 0.02562 * 1 2 3
26 26 H 1.08997 * 109.58633 * 113.80446 * 10 9 7
27 27 H 1.09000 * 109.70898 * 353.43868 * 10 9 7
28 28 H 1.08993 * 109.49958 * 185.41148 * 11 10 9
29 29 H 1.09005 * 109.49616 * 65.31682 * 11 10 9
30 30 H 1.09002 * 109.45656 * 301.35608 * 12 11 10
31 31 H 0.97002 * 119.99816 * 334.97132 * 13 12 11
32 32 H 1.09000 * 109.46788 * 60.00347 * 16 14 13
33 33 H 1.08993 * 109.47027 * 300.00378 * 16 14 13
34 34 H 1.09002 * 109.47183 * 59.99951 * 17 16 14
35 35 H 1.09001 * 109.47508 * 300.00400 * 17 16 14
36 36 H 1.09002 * 109.47122 * 59.99920 * 19 18 17
37 37 H 1.09004 * 109.46926 * 300.00028 * 19 18 17
38 38 H 1.08997 * 115.55451 * 29.32158 * 20 19 18
39 39 H 1.09009 * 117.49932 * 359.97438 * 21 20 19
40 40 H 1.09002 * 117.50045 * 145.01770 * 21 20 19
41 41 H 1.08996 * 117.50063 * 252.51172 * 22 21 20
42 42 H 1.09004 * 117.49960 * 107.48352 * 22 21 20
43 43 H 1.09006 * 109.49649 * 58.57931 * 23 12 11
44 44 H 1.08996 * 109.50410 * 178.67802 * 23 12 11
45 45 H 1.09000 * 109.58998 * 246.20377 * 24 9 7
46 46 H 1.09004 * 109.58514 * 6.48896 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8916 2.3964 -1.2126
6 1 1.8915 2.3964 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0550 -1.2227 -0.2717
9 7 1.3699 -2.3623 0.3464
10 6 0.2259 -2.3397 1.2680
11 6 0.4972 -3.3187 2.4147
12 6 0.8117 -4.7005 1.8368
13 7 1.0392 -5.6471 2.9315
14 6 0.8352 -6.9650 2.7362
15 8 0.4637 -7.3672 1.6539
16 6 1.0698 -7.9388 3.8621
17 6 0.7681 -9.3589 3.3793
18 8 0.9911 -10.2823 4.4468
19 6 0.7372 -11.6449 4.0991
20 6 1.0066 -12.5392 5.3109
21 6 2.1372 -13.5636 5.1956
22 6 0.6795 -14.0279 5.1771
23 6 2.0672 -4.6170 0.9658
24 6 1.8136 -3.6530 -0.1975
25 1 -0.4849 0.8401 -0.0004
26 1 -0.6772 -2.6404 0.7369
27 1 0.0965 -1.3344 1.6688
28 1 -0.3834 -3.3835 3.0538
29 1 1.3469 -2.9671 2.9999
30 1 -0.0284 -5.0406 1.2313
31 1 1.3367 -5.3254 3.7969
32 1 0.4154 -7.6921 4.6981
33 1 2.1093 -7.8781 4.1842
34 1 1.4228 -9.6053 2.5434
35 1 -0.2713 -9.4199 3.0568
36 1 1.3914 -11.9383 3.2780
37 1 -0.3029 -11.7537 3.7917
38 1 0.8458 -12.0741 6.2835
39 1 2.6889 -13.6007 4.2562
40 1 2.7206 -13.7724 6.0924
41 1 0.3038 -14.5421 6.0617
42 1 0.2723 -14.3701 4.2257
43 1 2.9020 -4.2530 1.5648
44 1 2.3043 -5.6059 0.5734
45 1 1.0400 -4.0607 -0.8482
46 1 2.7330 -3.5133 -0.7661
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610577411.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:56
Heat of formation + Delta-G solvation = -69.578627 kcal
Electronic energy + Delta-G solvation = -23476.249070 eV
Core-core repulsion = 19980.027085 eV
Total energy + Delta-G solvation = -3496.221984 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.05652 -39.46988 -38.91819 -37.47814 -36.00661 -34.01046 -32.80678 -31.73539
-31.01770 -28.04729 -26.93725 -24.86226 -23.91725 -23.30139 -23.21969 -21.70453
-21.31142 -20.79453 -18.91180 -18.34890 -17.45593 -17.24850 -17.09522 -16.72076
-16.32641 -15.98455 -15.58805 -15.36984 -15.35108 -14.87315 -14.56973 -14.43548
-14.32887 -14.03986 -13.92107 -13.21622 -13.03050 -12.64411 -12.57603 -12.54945
-12.48564 -12.36152 -12.22023 -12.01699 -11.99928 -11.88016 -11.56454 -11.36719
-11.35189 -11.17607 -10.87968 -10.57390 -10.49011 -10.00716 -8.71716 -7.88686
-5.34534 1.47300 1.49293 1.60035 1.63396 1.97173 2.51376 2.67950
2.97636 3.27522 3.64129 3.74366 3.83580 3.90990 3.96183 4.01801
4.05091 4.09201 4.30821 4.32009 4.32931 4.45449 4.50966 4.54418
4.64244 4.65881 4.77721 4.79505 4.82982 4.85230 4.87234 5.01586
5.03387 5.04884 5.15018 5.23540 5.24405 5.29150 5.46546 5.55371
5.64178 5.70667 6.16550 6.38210 6.60113 7.13701 7.27821 7.83094
8.36004 9.18542
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.056335 B = 0.002095 C = 0.002087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 496.910363 B =13361.800558 C =13415.320774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.050 4.050
3 Si 0.969 3.031
4 H -0.266 1.266
5 H -0.294 1.294
6 H -0.287 1.287
7 C -0.263 4.263
8 H 0.068 0.932
9 N -0.609 5.609
10 C 0.177 3.823
11 C -0.129 4.129
12 C 0.161 3.839
13 N -0.710 5.710
14 C 0.514 3.486
15 O -0.588 6.588
16 C -0.127 4.127
17 C 0.081 3.919
18 O -0.398 6.398
19 C 0.089 3.911
20 C -0.169 4.169
21 C -0.179 4.179
22 C -0.166 4.166
23 C -0.124 4.124
24 C 0.144 3.856
25 H 0.251 0.749
26 H -0.006 1.006
27 H 0.063 0.937
28 H 0.077 0.923
29 H 0.071 0.929
30 H 0.056 0.944
31 H 0.416 0.584
32 H 0.123 0.877
33 H 0.122 0.878
34 H 0.048 0.952
35 H 0.049 0.951
36 H 0.054 0.946
37 H 0.057 0.943
38 H 0.110 0.890
39 H 0.096 0.904
40 H 0.103 0.897
41 H 0.109 0.891
42 H 0.101 0.899
43 H 0.067 0.933
44 H 0.059 0.941
45 H 0.006 0.994
46 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.967 -23.069 13.969 27.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.246 4.246
3 Si 0.797 3.203
4 H -0.191 1.191
5 H -0.221 1.221
6 H -0.214 1.214
7 C -0.393 4.393
8 H 0.085 0.915
9 N -0.333 5.333
10 C 0.051 3.949
11 C -0.168 4.168
12 C 0.056 3.944
13 N -0.361 5.361
14 C 0.302 3.698
15 O -0.469 6.469
16 C -0.167 4.167
17 C 0.004 3.996
18 O -0.317 6.317
19 C 0.013 3.987
20 C -0.187 4.187
21 C -0.216 4.216
22 C -0.202 4.202
23 C -0.164 4.164
24 C 0.018 3.982
25 H 0.060 0.940
26 H 0.012 0.988
27 H 0.081 0.919
28 H 0.096 0.904
29 H 0.090 0.910
30 H 0.075 0.925
31 H 0.253 0.747
32 H 0.141 0.859
33 H 0.141 0.859
34 H 0.067 0.933
35 H 0.067 0.933
36 H 0.072 0.928
37 H 0.075 0.925
38 H 0.128 0.872
39 H 0.115 0.885
40 H 0.122 0.878
41 H 0.127 0.873
42 H 0.119 0.881
43 H 0.086 0.914
44 H 0.078 0.922
45 H 0.024 0.976
46 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 2.681 -23.162 13.381 26.884
hybrid contribution 0.059 1.216 -0.422 1.289
sum 2.740 -21.946 12.958 25.633
Atomic orbital electron populations
1.70192 1.06713 1.25895 1.55391 1.25830 0.96059 1.01574 1.01120
0.85181 0.78609 0.79690 0.76785 1.19064 1.22145 1.21396 1.19555
0.92874 0.85836 1.41012 0.91473 1.44354 1.35944 1.02190 1.50765
1.20574 0.87692 0.97820 0.88815 1.22255 1.02034 0.93659 0.98862
1.20641 0.97121 0.88482 0.88136 1.46043 1.68315 1.05955 1.15777
1.20961 0.75964 0.83471 0.89406 1.90708 1.48396 1.78995 1.28806
1.21411 1.06822 0.91334 0.97089 1.22034 1.00296 0.88277 0.89040
1.87760 1.89875 1.16612 1.37493 1.22121 0.99950 0.80587 0.96025
1.22144 1.06011 0.91059 0.99479 1.23167 0.91727 1.02720 1.03970
1.23078 0.98398 0.94410 1.04360 1.22168 0.97853 0.98608 0.97752
1.20973 0.97328 0.86013 0.93937 0.94012 0.98839 0.91854 0.90439
0.91013 0.92533 0.74697 0.85878 0.85949 0.93321 0.93257 0.92821
0.92488 0.87229 0.88527 0.87825 0.87256 0.88061 0.91382 0.92191
0.97605 0.92411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.18 11.19 21.65 0.24 -54.94 16
2 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16
3 Si 0.97 44.44 29.59 68.60 2.03 46.47 16
4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16
5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16
6 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16
7 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16
8 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16
9 N -0.61 -30.73 2.99 -699.08 -2.09 -32.82 16
10 C 0.18 8.44 5.30 86.36 0.46 8.90 16
11 C -0.13 -4.49 5.55 30.67 0.17 -4.32 16
12 C 0.16 5.35 2.42 45.02 0.11 5.46 16
13 N -0.71 -17.46 5.08 -442.40 -2.25 -19.71 16
14 C 0.51 13.30 7.79 87.66 0.68 13.98 16
15 O -0.59 -20.69 15.65 -3.05 -0.05 -20.74 16
16 C -0.13 -2.23 6.07 29.85 0.18 -2.05 16
17 C 0.08 1.65 5.23 71.98 0.38 2.03 16
18 O -0.40 -7.94 10.34 -148.98 -1.54 -9.48 16
19 C 0.09 1.46 6.22 71.98 0.45 1.91 16
20 C -0.17 -2.34 6.06 -10.79 -0.07 -2.41 16
21 C -0.18 -2.03 10.18 30.60 0.31 -1.72 16
22 C -0.17 -1.68 10.25 30.60 0.31 -1.37 16
23 C -0.12 -4.36 5.65 30.67 0.17 -4.19 16
24 C 0.14 6.23 6.52 86.36 0.56 6.79 16
25 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16
26 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16
27 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16
28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16
29 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16
30 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16
31 H 0.42 7.33 8.60 -92.71 -0.80 6.53 16
32 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16
33 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16
34 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16
35 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16
36 H 0.05 0.83 7.88 -2.39 -0.02 0.81 16
37 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16
38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16
39 H 0.10 1.07 8.03 -2.38 -0.02 1.05 16
40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
42 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16
43 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16
44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16
46 H 0.06 2.44 7.93 -2.38 -0.02 2.42 16
Total: -1.00 -68.81 372.21 1.44 -67.37
By element:
Atomic # 1 Polarization: 16.68 SS G_CDS: 0.15 Total: 16.82 kcal
Atomic # 6 Polarization: 2.08 SS G_CDS: 4.94 Total: 7.03 kcal
Atomic # 7 Polarization: -103.38 SS G_CDS: -4.10 Total: -107.47 kcal
Atomic # 8 Polarization: -28.63 SS G_CDS: -1.59 Total: -30.22 kcal
Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal
Total: -68.81 1.44 -67.37 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610577411.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.210 kcal
(2) G-P(sol) polarization free energy of solvation -68.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds