Wall clock time and date at job start Tue Mar 31 2020 03:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00283 * 2 1 4 4 H 1.48501 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47281 * 300.00084 * 3 2 1 6 6 H 1.48503 * 109.47059 * 60.00271 * 3 2 1 7 7 C 1.38954 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99535 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99737 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00577 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99414 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46598 * 179.97438 * 12 10 9 14 14 C 1.46853 * 111.00118 * 65.79135 * 13 12 10 15 15 C 1.53035 * 109.52166 * 185.83567 * 14 13 12 16 16 C 1.53120 * 109.28193 * 300.81905 * 15 14 13 17 17 C 1.53117 * 109.15978 * 57.65407 * 16 15 14 18 18 H 1.08997 * 109.53227 * 62.30866 * 17 16 15 19 19 C 1.52997 * 109.50248 * 182.40706 * 17 16 15 20 20 C 1.53006 * 109.47127 * 294.80199 * 19 17 16 21 21 H 1.09002 * 110.45345 * 52.39427 * 20 19 17 22 22 C 1.54502 * 110.51009 * 175.00118 * 20 19 17 23 23 C 1.54484 * 104.06398 * 118.64816 * 22 20 19 24 24 O 1.44428 * 104.80115 * 23.97779 * 23 22 20 25 25 C 1.44426 * 105.27348 * 319.49115 * 24 23 22 26 26 C 1.46852 * 111.00008 * 189.99893 * 13 12 10 27 27 H 0.97001 * 119.99672 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99697 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47430 * 59.99998 * 12 10 9 30 30 H 1.08998 * 109.46904 * 299.99084 * 12 10 9 31 31 H 1.08993 * 109.46275 * 305.85033 * 14 13 12 32 32 H 1.08996 * 109.46398 * 65.83078 * 14 13 12 33 33 H 1.09005 * 109.50566 * 60.76230 * 15 14 13 34 34 H 1.09001 * 109.50100 * 180.83919 * 15 14 13 35 35 H 1.08999 * 109.52069 * 297.74879 * 16 15 14 36 36 H 1.08997 * 109.52104 * 177.56326 * 16 15 14 37 37 H 1.09001 * 109.46832 * 174.80520 * 19 17 16 38 38 H 1.08993 * 109.47194 * 54.80041 * 19 17 16 39 39 H 1.09004 * 110.51233 * 237.29080 * 22 20 19 40 40 H 1.08996 * 110.51275 * 359.86297 * 22 20 19 41 41 H 1.08995 * 110.37225 * 142.80899 * 23 22 20 42 42 H 1.09000 * 110.36973 * 265.03653 * 23 22 20 43 43 H 1.09005 * 110.37003 * 281.67637 * 25 24 23 44 44 H 1.08998 * 110.37095 * 159.34755 * 25 24 23 45 45 H 1.08995 * 109.46293 * 54.14375 * 26 13 12 46 46 H 1.09007 * 109.45934 * 294.17711 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9795 -0.0016 14 6 2.9673 -6.0148 1.2488 15 6 4.0471 -7.0952 1.1546 16 6 3.3840 -8.4522 0.9030 17 6 2.5502 -8.3742 -0.3788 18 1 3.2028 -8.1623 -1.2257 19 6 1.8360 -9.7081 -0.6055 20 6 2.8719 -10.8032 -0.8680 21 1 3.6249 -10.8120 -0.0799 22 6 2.1853 -12.1830 -0.9763 23 6 2.5126 -12.6535 -2.4109 24 8 3.7156 -11.9387 -2.7683 25 6 3.5327 -10.6031 -2.2498 26 6 1.5138 -7.2568 -0.2402 27 1 -0.4850 0.8401 0.0004 28 1 0.3532 -2.3906 0.0002 29 1 0.6171 -4.9205 -0.8913 30 1 0.6166 -4.9209 0.8887 31 1 3.4371 -5.0452 1.4136 32 1 2.2994 -6.2407 2.0799 33 1 4.7238 -6.8627 0.3321 34 1 4.6083 -7.1312 2.0883 35 1 2.7371 -8.7029 1.7437 36 1 4.1519 -9.2178 0.7922 37 1 1.1715 -9.6229 -1.4653 38 1 1.2537 -9.9635 0.2798 39 1 2.6006 -12.8749 -0.2435 40 1 1.1083 -12.0855 -0.8405 41 1 2.6914 -13.7286 -2.4261 42 1 1.6998 -12.3951 -3.0897 43 1 2.8773 -10.0285 -2.9044 44 1 4.4951 -10.1031 -2.1414 45 1 0.9278 -7.1892 -1.1568 46 1 0.8526 -7.4767 0.5980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611350502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:30 Heat of formation + Delta-G solvation = -96.531783 kcal Electronic energy + Delta-G solvation = -24306.005558 eV Core-core repulsion = 20808.614797 eV Total energy + Delta-G solvation = -3497.390761 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03065 -39.04240 -37.67330 -34.92181 -33.81654 -32.56809 -31.24568 -31.08809 -29.29066 -27.41422 -25.81995 -24.65289 -23.29601 -22.76027 -21.74382 -20.32645 -19.49884 -19.09622 -17.82163 -16.73390 -16.12901 -15.82389 -15.60840 -15.39827 -14.84672 -14.61100 -14.55600 -14.06920 -13.77592 -13.56593 -13.56578 -13.35167 -12.98868 -12.89036 -12.37051 -12.13331 -11.97474 -11.72650 -11.52600 -11.42008 -11.29672 -11.06432 -10.98162 -10.90288 -10.73303 -10.49520 -10.33601 -10.21873 -10.14877 -10.08315 -9.99224 -9.45259 -8.38395 -7.95303 -7.78268 -6.40287 -3.80796 3.17178 3.27599 3.34870 3.72253 3.92746 3.99158 4.22776 4.32687 4.44583 4.62148 4.73597 4.87455 4.91805 5.02175 5.05361 5.08340 5.23188 5.27052 5.35878 5.39364 5.43287 5.54055 5.57301 5.58732 5.64484 5.69469 5.71147 5.73557 5.77159 5.84953 5.90656 6.01203 6.03430 6.09416 6.22371 6.29765 6.31791 6.53812 6.55342 6.61906 7.38096 7.50955 7.57059 8.08829 8.64008 9.20149 9.56818 10.08833 10.77681 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002566 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.644758 B =10910.865176 C =11032.716285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.576 6.576 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.052 3.948 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.084 4.084 18 H 0.081 0.919 19 C -0.104 4.104 20 C -0.121 4.121 21 H 0.087 0.913 22 C -0.153 4.153 23 C 0.044 3.956 24 O -0.379 6.379 25 C 0.048 3.952 26 C 0.061 3.939 27 H 0.270 0.730 28 H 0.392 0.608 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -22.363 -0.050 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.075 4.075 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.103 4.103 18 H 0.099 0.901 19 C -0.142 4.142 20 C -0.140 4.140 21 H 0.105 0.895 22 C -0.190 4.190 23 C -0.033 4.033 24 O -0.298 6.298 25 C -0.028 4.028 26 C -0.067 4.067 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.382 -22.193 -0.550 22.242 hybrid contribution -1.175 0.852 0.801 1.658 sum 0.206 -21.340 0.251 21.343 Atomic orbital electron populations 1.69622 1.05935 1.27990 1.50888 1.25259 0.95634 0.99706 0.97454 0.85807 0.79716 0.81194 0.77676 1.19227 1.20762 1.20814 1.19744 0.93365 0.82209 1.47304 0.87883 1.41884 1.09182 1.04616 1.64600 1.19761 0.88418 0.84551 0.84242 1.90482 1.13697 1.86888 1.54970 1.21834 0.93982 0.91341 1.01350 1.61479 1.24968 1.01273 1.36168 1.22252 0.95140 1.01554 0.88578 1.21542 0.98054 0.93769 1.01770 1.21688 0.98900 0.97628 0.97038 1.21195 0.97107 0.93025 0.98991 0.90093 1.21669 0.97117 0.93568 1.01873 1.22598 0.98374 0.94394 0.98634 0.89511 1.23023 1.01496 0.96848 0.97675 1.23391 0.87926 0.97428 0.94566 1.89124 1.38321 1.23447 1.78918 1.23570 1.01464 0.84798 0.93011 1.22116 0.95021 0.89375 1.00218 0.91973 0.77529 0.89470 0.93672 0.88000 0.96342 0.90973 0.92027 0.92598 0.92071 0.91599 0.91643 0.90842 0.90396 0.89413 0.92374 0.91899 0.88975 0.91082 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 10 C 0.44 10.54 7.46 -10.98 -0.08 10.46 16 11 O -0.58 -15.51 13.90 5.55 0.08 -15.43 16 12 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 13 N -0.51 -8.64 4.40 -236.11 -1.04 -9.68 16 14 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 15 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 16 C -0.12 -1.24 5.00 -26.61 -0.13 -1.38 16 17 C -0.08 -0.91 2.29 -90.54 -0.21 -1.11 16 18 H 0.08 0.96 7.50 -51.93 -0.39 0.57 16 19 C -0.10 -0.87 3.90 -26.73 -0.10 -0.97 16 20 C -0.12 -0.98 2.99 -89.05 -0.27 -1.25 16 21 H 0.09 0.72 6.38 -51.93 -0.33 0.39 16 22 C -0.15 -1.07 6.74 -25.16 -0.17 -1.24 16 23 C 0.04 0.34 7.63 37.94 0.29 0.63 16 24 O -0.38 -4.13 11.65 -35.23 -0.41 -4.54 16 25 C 0.05 0.45 6.44 37.93 0.24 0.69 16 26 C 0.06 0.78 4.74 -3.83 -0.02 0.76 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 29 H 0.09 1.43 7.99 -51.93 -0.41 1.02 16 30 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.10 2.07 5.78 -51.93 -0.30 1.76 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 37 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.57 7.74 -51.93 -0.40 0.17 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 46 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -31.09 356.75 -9.14 -40.23 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.89 Total: 7.74 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.90 Total: -1.40 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.37 Total: -48.10 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.33 Total: -19.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.09 -9.14 -40.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611350502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.301 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds