Wall clock time and date at job start Tue Mar 31 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00283 * 2 1 4 4 H 1.48501 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47281 * 300.00084 * 3 2 1 6 6 H 1.48503 * 109.47059 * 60.00271 * 3 2 1 7 7 C 1.38954 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99535 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99737 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00577 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99414 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46598 * 179.97438 * 12 10 9 14 14 C 1.46853 * 111.00118 * 65.79135 * 13 12 10 15 15 C 1.53035 * 109.52166 * 185.83567 * 14 13 12 16 16 C 1.53120 * 109.28193 * 300.81905 * 15 14 13 17 17 C 1.53117 * 109.15978 * 57.65407 * 16 15 14 18 18 H 1.08997 * 109.53227 * 62.30866 * 17 16 15 19 19 C 1.52997 * 109.50248 * 182.40706 * 17 16 15 20 20 C 1.53006 * 109.47127 * 294.80199 * 19 17 16 21 21 H 1.09002 * 110.45345 * 52.39427 * 20 19 17 22 22 C 1.54502 * 110.51009 * 175.00118 * 20 19 17 23 23 C 1.54484 * 104.06398 * 118.64816 * 22 20 19 24 24 O 1.44428 * 104.80115 * 23.97779 * 23 22 20 25 25 C 1.44426 * 105.27348 * 319.49115 * 24 23 22 26 26 C 1.46852 * 111.00008 * 189.99893 * 13 12 10 27 27 H 0.97001 * 119.99672 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99697 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47430 * 59.99998 * 12 10 9 30 30 H 1.08998 * 109.46904 * 299.99084 * 12 10 9 31 31 H 1.08993 * 109.46275 * 305.85033 * 14 13 12 32 32 H 1.08996 * 109.46398 * 65.83078 * 14 13 12 33 33 H 1.09005 * 109.50566 * 60.76230 * 15 14 13 34 34 H 1.09001 * 109.50100 * 180.83919 * 15 14 13 35 35 H 1.08999 * 109.52069 * 297.74879 * 16 15 14 36 36 H 1.08997 * 109.52104 * 177.56326 * 16 15 14 37 37 H 1.09001 * 109.46832 * 174.80520 * 19 17 16 38 38 H 1.08993 * 109.47194 * 54.80041 * 19 17 16 39 39 H 1.09004 * 110.51233 * 237.29080 * 22 20 19 40 40 H 1.08996 * 110.51275 * 359.86297 * 22 20 19 41 41 H 1.08995 * 110.37225 * 142.80899 * 23 22 20 42 42 H 1.09000 * 110.36973 * 265.03653 * 23 22 20 43 43 H 1.09005 * 110.37003 * 281.67637 * 25 24 23 44 44 H 1.08998 * 110.37095 * 159.34755 * 25 24 23 45 45 H 1.08995 * 109.46293 * 54.14375 * 26 13 12 46 46 H 1.09007 * 109.45934 * 294.17711 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9795 -0.0016 14 6 2.9673 -6.0148 1.2488 15 6 4.0471 -7.0952 1.1546 16 6 3.3840 -8.4522 0.9030 17 6 2.5502 -8.3742 -0.3788 18 1 3.2028 -8.1623 -1.2257 19 6 1.8360 -9.7081 -0.6055 20 6 2.8719 -10.8032 -0.8680 21 1 3.6249 -10.8120 -0.0799 22 6 2.1853 -12.1830 -0.9763 23 6 2.5126 -12.6535 -2.4109 24 8 3.7156 -11.9387 -2.7683 25 6 3.5327 -10.6031 -2.2498 26 6 1.5138 -7.2568 -0.2402 27 1 -0.4850 0.8401 0.0004 28 1 0.3532 -2.3906 0.0002 29 1 0.6171 -4.9205 -0.8913 30 1 0.6166 -4.9209 0.8887 31 1 3.4371 -5.0452 1.4136 32 1 2.2994 -6.2407 2.0799 33 1 4.7238 -6.8627 0.3321 34 1 4.6083 -7.1312 2.0883 35 1 2.7371 -8.7029 1.7437 36 1 4.1519 -9.2178 0.7922 37 1 1.1715 -9.6229 -1.4653 38 1 1.2537 -9.9635 0.2798 39 1 2.6006 -12.8749 -0.2435 40 1 1.1083 -12.0855 -0.8405 41 1 2.6914 -13.7286 -2.4261 42 1 1.6998 -12.3951 -3.0897 43 1 2.8773 -10.0285 -2.9044 44 1 4.4951 -10.1031 -2.1414 45 1 0.9278 -7.1892 -1.1568 46 1 0.8526 -7.4767 0.5980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611350502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:29 Heat of formation + Delta-G solvation = -117.815822 kcal Electronic energy + Delta-G solvation = -24306.928503 eV Core-core repulsion = 20808.614797 eV Total energy + Delta-G solvation = -3498.313706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93253 -40.30426 -39.16453 -36.18619 -35.57364 -33.67599 -33.18017 -32.00403 -30.03452 -28.90538 -26.66020 -26.48112 -24.15476 -23.82430 -22.71137 -21.17438 -20.85806 -20.43139 -19.84314 -17.76146 -17.41583 -16.71403 -16.65821 -16.48535 -16.25162 -16.24430 -15.72921 -15.44986 -15.16099 -14.89357 -14.67940 -14.36428 -13.99012 -13.76769 -13.67163 -13.48204 -13.27533 -13.00217 -12.84747 -12.58268 -12.40850 -12.34327 -12.18621 -12.12422 -11.90260 -11.75298 -11.59865 -11.46635 -11.31768 -11.12298 -10.96654 -10.70753 -10.20978 -9.99127 -9.14175 -8.46630 -5.95002 1.36000 1.41005 1.55260 2.05968 2.28339 2.77642 3.11561 3.20183 3.40093 3.65784 3.72791 3.94147 3.99303 4.02156 4.10994 4.23967 4.31216 4.34887 4.40207 4.44787 4.48277 4.54366 4.60566 4.65760 4.71305 4.77368 4.84315 4.87923 4.90529 4.94590 4.98728 5.08671 5.10198 5.15375 5.20279 5.30677 5.33802 5.41230 5.49813 5.58428 5.90686 5.93609 6.13854 6.32388 6.61443 7.13626 7.57181 8.13410 8.71165 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002566 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.644758 B =10910.865176 C =11032.716285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.613 6.613 12 C 0.058 3.942 13 N -0.535 5.535 14 C 0.054 3.946 15 C -0.110 4.110 16 C -0.107 4.107 17 C -0.080 4.080 18 H 0.066 0.934 19 C -0.093 4.093 20 C -0.117 4.117 21 H 0.087 0.913 22 C -0.147 4.147 23 C 0.036 3.964 24 O -0.407 6.407 25 C 0.044 3.956 26 C 0.060 3.940 27 H 0.277 0.723 28 H 0.396 0.604 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -23.927 0.306 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.499 6.499 12 C -0.074 4.074 13 N -0.260 5.260 14 C -0.073 4.073 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.099 4.099 18 H 0.084 0.916 19 C -0.131 4.131 20 C -0.135 4.135 21 H 0.105 0.895 22 C -0.185 4.185 23 C -0.040 4.040 24 O -0.326 6.326 25 C -0.033 4.033 26 C -0.067 4.067 27 H 0.087 0.913 28 H 0.229 0.771 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.170 -23.781 -0.194 23.782 hybrid contribution -0.784 1.298 0.673 1.659 sum -0.614 -22.483 0.478 22.496 Atomic orbital electron populations 1.69679 1.06805 1.29176 1.50612 1.26033 0.96559 1.02379 0.96417 0.84877 0.77995 0.77162 0.78344 1.19882 1.19576 1.19569 1.19673 0.92609 0.84004 1.49663 0.90446 1.41953 1.09285 1.04721 1.65407 1.20801 0.88320 0.85942 0.82037 1.90462 1.15718 1.87753 1.55999 1.21714 0.93700 0.88789 1.03151 1.61457 1.25478 1.02627 1.36389 1.22131 0.95943 1.00199 0.89069 1.21509 0.97072 0.94563 1.01626 1.21649 0.99372 0.96009 0.97452 1.21156 0.96580 0.93708 0.98428 0.91551 1.21576 0.96953 0.91858 1.02731 1.22544 0.98307 0.95035 0.97647 0.89490 1.23010 1.02290 0.96042 0.97151 1.23595 0.87185 0.97918 0.95322 1.89095 1.39921 1.24192 1.79436 1.23621 1.01364 0.84391 0.93900 1.22249 0.95629 0.87749 1.01093 0.91336 0.77070 0.87334 0.91856 0.92630 0.95284 0.92997 0.90899 0.91374 0.90398 0.90989 0.90313 0.90139 0.88967 0.88300 0.91757 0.92018 0.89598 0.90165 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.58 -30.08 5.29 -306.97 -1.62 -31.70 16 10 C 0.44 21.47 7.46 87.66 0.65 22.13 16 11 O -0.61 -34.48 13.90 -3.07 -0.04 -34.52 16 12 C 0.06 2.05 5.45 85.56 0.47 2.52 16 13 N -0.53 -17.59 4.40 -900.92 -3.96 -21.55 16 14 C 0.05 1.80 5.11 86.32 0.44 2.24 16 15 C -0.11 -2.91 6.09 30.65 0.19 -2.72 16 16 C -0.11 -2.07 5.00 30.67 0.15 -1.92 16 17 C -0.08 -1.54 2.29 -10.74 -0.02 -1.56 16 18 H 0.07 1.50 7.50 -2.39 -0.02 1.48 16 19 C -0.09 -1.25 3.90 30.60 0.12 -1.13 16 20 C -0.12 -1.59 2.99 -9.78 -0.03 -1.62 16 21 H 0.09 1.20 6.38 -2.39 -0.02 1.18 16 22 C -0.15 -1.63 6.74 31.61 0.21 -1.41 16 23 C 0.04 0.49 7.63 72.49 0.55 1.05 16 24 O -0.41 -8.42 11.65 -148.98 -1.74 -10.16 16 25 C 0.04 0.76 6.44 72.48 0.47 1.23 16 26 C 0.06 1.40 4.74 86.32 0.41 1.81 16 27 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.40 19.60 7.90 -92.71 -0.73 18.86 16 29 H 0.11 3.40 7.99 -2.39 -0.02 3.38 16 30 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 31 H 0.06 2.36 5.78 -2.39 -0.01 2.35 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.27 6.56 -2.39 -0.02 1.26 16 37 H 0.07 0.92 7.96 -2.39 -0.02 0.90 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.77 7.73 -2.39 -0.02 0.75 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 1.06 7.74 -2.38 -0.02 1.05 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.73 8.01 -2.39 -0.02 1.71 16 46 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -68.84 356.75 0.06 -68.78 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.23 Total: 31.47 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 4.89 Total: 2.12 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -5.30 Total: -103.17 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.78 Total: -44.68 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.84 0.06 -68.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611350502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.036 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds