Wall clock time and date at job start Tue Mar 31 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.52078 * 2 1 4 4 O 1.21280 * 119.99915 * 120.12383 * 3 2 1 5 5 N 1.34776 * 119.99904 * 300.12972 * 3 2 1 6 6 C 1.46497 * 119.99939 * 179.97438 * 5 3 2 7 7 C 1.53039 * 109.46192 * 154.99736 * 6 5 3 8 8 C 1.53193 * 109.31349 * 181.38566 * 7 6 5 9 9 N 1.46928 * 108.77566 * 305.36387 * 8 7 6 10 10 C 1.36932 * 120.63018 * 233.58628 * 9 8 7 11 11 H 1.08001 * 120.00013 * 152.40378 * 10 9 8 12 12 C 1.38818 * 119.99956 * 332.40584 * 10 9 8 13 13 N 1.31619 * 119.99879 * 334.90196 * 12 10 9 14 14 Si 1.86804 * 119.99969 * 154.90683 * 12 10 9 15 15 H 1.48499 * 109.47034 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46708 * 239.99627 * 14 12 10 17 17 H 1.48497 * 109.46998 * 119.99834 * 14 12 10 18 18 C 1.46925 * 118.73831 * 53.85981 * 9 8 7 19 19 C 1.53041 * 109.46226 * 275.06388 * 6 5 3 20 20 C 1.53174 * 109.52337 * 120.12481 * 2 1 3 21 21 C 1.53177 * 109.03862 * 176.95127 * 20 2 1 22 22 C 1.53086 * 109.16189 * 303.02477 * 21 20 2 23 23 O 1.42899 * 109.42107 * 57.60404 * 22 21 20 24 24 C 1.42901 * 114.09685 * 298.84713 * 23 22 21 25 25 H 1.09002 * 109.47326 * 59.99960 * 1 2 3 26 26 H 1.09004 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47552 * 300.00107 * 1 2 3 28 28 H 0.96995 * 120.00202 * 359.97438 * 5 3 2 29 29 H 1.09005 * 109.46084 * 35.02103 * 6 5 3 30 30 H 1.08993 * 109.50171 * 61.43264 * 7 6 5 31 31 H 1.09002 * 109.49628 * 301.33433 * 7 6 5 32 32 H 1.09002 * 109.58851 * 185.57662 * 8 7 6 33 33 H 1.09003 * 109.70662 * 65.22113 * 8 7 6 34 34 H 0.97004 * 119.99976 * 354.25698 * 13 12 10 35 35 H 1.09006 * 109.58146 * 65.92609 * 18 9 8 36 36 H 1.08996 * 109.58709 * 186.35137 * 18 9 8 37 37 H 1.09000 * 109.49771 * 298.56742 * 19 6 5 38 38 H 1.09007 * 109.49505 * 58.65866 * 19 6 5 39 39 H 1.08998 * 109.54328 * 296.82105 * 20 2 1 40 40 H 1.08996 * 109.54404 * 56.99493 * 20 2 1 41 41 H 1.09006 * 109.52093 * 62.92563 * 21 20 2 42 42 H 1.08997 * 109.52757 * 183.11175 * 21 20 2 43 43 H 1.08999 * 109.48359 * 177.58984 * 22 21 20 44 44 H 1.09001 * 109.47956 * 297.60777 * 22 21 20 45 45 H 1.09002 * 109.47960 * 301.16883 * 24 23 22 46 46 H 1.09004 * 109.48218 * 181.14283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4204 0.0000 4 8 2.7330 1.8158 0.9085 5 7 1.7065 2.2513 -1.0095 6 6 2.1955 3.6323 -1.0092 7 6 2.2446 4.1561 -2.4463 8 6 2.7890 5.5880 -2.4453 9 7 1.9746 6.4030 -1.5335 10 6 1.4017 7.5698 -1.9639 11 1 0.4931 7.9276 -1.5025 12 6 1.9886 8.2928 -2.9934 13 7 3.2790 8.1778 -3.2258 14 14 0.9471 9.4292 -4.0486 15 1 -0.4632 9.3795 -3.5864 16 1 1.0188 8.9922 -5.4661 17 1 1.4579 10.8187 -3.9326 18 6 1.7917 5.9452 -0.1494 19 6 1.2540 4.5065 -0.1778 20 6 2.0419 -0.7246 1.2487 21 6 3.5716 -0.7850 1.1994 22 6 4.0057 -1.4792 -0.0941 23 8 3.4707 -0.7726 -1.2151 24 6 2.0429 -0.7246 -1.2472 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.1473 1.9350 -1.7362 29 1 3.1958 3.6632 -0.5770 30 1 1.2407 4.1489 -2.8707 31 1 2.8972 3.5192 -3.0436 32 1 2.7335 6.0008 -3.4527 33 1 3.8254 5.5870 -2.1076 34 1 3.8347 7.6538 -2.6278 35 1 2.7480 5.9706 0.3731 36 1 1.0780 6.5937 0.3586 37 1 0.2593 4.4960 -0.6234 38 1 1.2013 4.1189 0.8397 39 1 1.7269 -0.1819 2.1400 40 1 1.6364 -1.7359 1.2753 41 1 3.9771 0.2265 1.2237 42 1 3.9418 -1.3474 2.0566 43 1 5.0939 -1.4870 -0.1550 44 1 3.6341 -2.5039 -0.0991 45 1 1.6454 -1.7393 -1.2673 46 1 1.7171 -0.1887 -2.1388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611568201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:48 Heat of formation + Delta-G solvation = -78.144242 kcal Electronic energy + Delta-G solvation = -25600.354590 eV Core-core repulsion = 22103.761173 eV Total energy + Delta-G solvation = -3496.593417 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89052 -38.65116 -37.31978 -34.68210 -34.63275 -32.69462 -31.73532 -30.20665 -29.12071 -27.25005 -25.38441 -25.03063 -23.43933 -22.36451 -22.11699 -21.11966 -19.78306 -18.93905 -17.49840 -16.95340 -16.44273 -15.92446 -15.71194 -15.23763 -14.58261 -14.41418 -14.22449 -14.18528 -13.81151 -13.50219 -13.30599 -13.06711 -12.84309 -12.61597 -12.55262 -12.41172 -12.20425 -12.12553 -11.62413 -11.23229 -11.09732 -10.86483 -10.82399 -10.69320 -10.62376 -10.37344 -10.27283 -10.07174 -9.90486 -9.77880 -9.41118 -9.23177 -8.69223 -8.34968 -6.88544 -6.06079 -3.21938 2.76583 3.28846 3.51488 3.54265 3.67812 3.69888 4.26700 4.43576 4.55511 4.60350 4.77411 4.87411 4.97147 5.12526 5.18606 5.22594 5.30400 5.32249 5.35631 5.42291 5.47471 5.51233 5.55071 5.63247 5.73200 5.80403 5.84972 5.95519 5.96358 6.16784 6.21597 6.32949 6.37267 6.47423 6.51459 6.72271 6.83528 6.86683 6.94663 7.04616 7.15921 7.71412 8.02533 8.41583 8.58540 9.12702 9.85749 10.30531 11.22547 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.003471 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.893114 B = 8064.945642 C = 8174.038824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.531 3.469 4 O -0.537 6.537 5 N -0.721 5.721 6 C 0.153 3.847 7 C -0.141 4.141 8 C 0.154 3.846 9 N -0.600 5.600 10 C -0.349 4.349 11 H 0.057 0.943 12 C -0.025 4.025 13 N -0.917 5.917 14 Si 1.069 2.931 15 H -0.292 1.292 16 H -0.290 1.290 17 H -0.294 1.294 18 C 0.149 3.851 19 C -0.138 4.138 20 C -0.094 4.094 21 C -0.168 4.168 22 C 0.060 3.940 23 O -0.376 6.376 24 C 0.074 3.926 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.393 0.607 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.019 0.981 34 H 0.270 0.730 35 H 0.018 0.982 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -21.510 5.118 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C 0.317 3.683 4 O -0.414 6.414 5 N -0.370 5.370 6 C 0.050 3.950 7 C -0.181 4.181 8 C 0.027 3.973 9 N -0.324 5.324 10 C -0.478 4.478 11 H 0.074 0.926 12 C -0.227 4.227 13 N -0.557 5.557 14 Si 0.899 3.101 15 H -0.219 1.219 16 H -0.217 1.217 17 H -0.221 1.221 18 C 0.023 3.977 19 C -0.178 4.178 20 C -0.132 4.132 21 C -0.205 4.205 22 C -0.017 4.017 23 O -0.294 6.294 24 C -0.003 4.003 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.227 0.773 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.856 -20.082 4.310 20.898 hybrid contribution -0.558 -1.331 1.293 1.938 sum -4.415 -21.413 5.603 22.570 Atomic orbital electron populations 1.21776 0.91858 1.02876 1.03156 1.21547 0.97647 0.94168 0.98973 1.20096 0.79822 0.86430 0.81962 1.90622 1.37700 1.77114 1.35969 1.46251 1.53156 1.12813 1.24785 1.20970 0.98211 0.78670 0.97174 1.22387 1.01759 0.99773 0.94145 1.20904 0.92448 0.87217 0.96685 1.44183 1.60245 1.22949 1.04990 1.20034 1.05880 1.00334 1.21575 0.92560 1.25851 0.97060 0.99218 1.00552 1.70722 1.03652 1.39763 1.41600 0.83479 0.74462 0.75817 0.76337 1.21868 1.21684 1.22118 1.20951 0.97554 0.91755 0.87476 1.22429 0.99074 0.97589 0.98704 1.21401 0.95933 0.99326 0.96491 1.22391 0.96213 1.04232 0.97660 1.22631 0.99127 0.94071 0.85862 1.87997 1.19446 1.76524 1.45438 1.22608 0.81909 0.99536 0.96257 0.91735 0.91357 0.91519 0.77343 0.90163 0.91909 0.92463 0.89798 0.96302 0.91940 0.96369 0.92458 0.92304 0.92776 0.90705 0.91576 0.88358 0.91140 0.88937 0.93491 0.92155 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.38 37.16 0.31 -0.80 16 2 C -0.12 -1.24 0.63 -155.53 -0.10 -1.34 16 3 C 0.53 7.69 5.87 -10.98 -0.06 7.63 16 4 O -0.54 -9.74 13.50 5.56 0.08 -9.67 16 5 N -0.72 -10.22 4.85 -53.76 -0.26 -10.48 16 6 C 0.15 2.70 2.41 -67.89 -0.16 2.54 16 7 C -0.14 -2.60 5.55 -26.61 -0.15 -2.74 16 8 C 0.15 3.60 4.69 -3.71 -0.02 3.58 16 9 N -0.60 -15.13 2.85 -172.05 -0.49 -15.62 16 10 C -0.35 -9.77 9.49 -15.06 -0.14 -9.91 16 11 H 0.06 1.59 7.94 -52.49 -0.42 1.17 16 12 C -0.02 -0.70 4.68 -17.43 -0.08 -0.79 16 13 N -0.92 -27.50 12.40 55.49 0.69 -26.81 16 14 Si 1.07 25.26 29.99 -169.99 -5.10 20.16 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 C 0.15 3.28 6.54 -3.49 -0.02 3.26 16 19 C -0.14 -2.56 5.67 -26.39 -0.15 -2.71 16 20 C -0.09 -0.94 4.45 -26.55 -0.12 -1.06 16 21 C -0.17 -1.82 5.81 -26.60 -0.15 -1.97 16 22 C 0.06 0.60 6.84 37.20 0.25 0.85 16 23 O -0.38 -4.62 10.45 -35.23 -0.37 -4.98 16 24 C 0.07 0.71 5.47 37.20 0.20 0.91 16 25 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.39 4.55 7.43 -40.82 -0.30 4.24 16 29 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 2.18 6.29 -51.93 -0.33 1.85 16 33 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 34 H 0.27 8.18 6.71 -40.82 -0.27 7.90 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.83 8.02 -51.93 -0.42 0.42 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 1.42 5.81 -51.93 -0.30 1.12 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.83 7.53 -51.93 -0.39 0.44 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -32.61 350.24 -8.47 -41.09 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.91 Total: 3.59 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.39 Total: -2.56 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.06 Total: -52.91 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.29 Total: -14.65 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.10 Total: 20.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.61 -8.47 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611568201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.059 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds