Wall clock time and date at job start Tue Mar 31 2020 03:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.52078 * 2 1 4 4 O 1.21280 * 119.99915 * 120.12383 * 3 2 1 5 5 N 1.34776 * 119.99904 * 300.12972 * 3 2 1 6 6 C 1.46497 * 119.99939 * 179.97438 * 5 3 2 7 7 C 1.53039 * 109.46192 * 154.99736 * 6 5 3 8 8 C 1.53193 * 109.31349 * 181.38566 * 7 6 5 9 9 N 1.46928 * 108.77566 * 305.36387 * 8 7 6 10 10 C 1.36932 * 120.63018 * 233.58628 * 9 8 7 11 11 H 1.08001 * 120.00013 * 152.40378 * 10 9 8 12 12 C 1.38818 * 119.99956 * 332.40584 * 10 9 8 13 13 N 1.31619 * 119.99879 * 334.90196 * 12 10 9 14 14 Si 1.86804 * 119.99969 * 154.90683 * 12 10 9 15 15 H 1.48499 * 109.47034 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46708 * 239.99627 * 14 12 10 17 17 H 1.48497 * 109.46998 * 119.99834 * 14 12 10 18 18 C 1.46925 * 118.73831 * 53.85981 * 9 8 7 19 19 C 1.53041 * 109.46226 * 275.06388 * 6 5 3 20 20 C 1.53174 * 109.52337 * 120.12481 * 2 1 3 21 21 C 1.53177 * 109.03862 * 176.95127 * 20 2 1 22 22 C 1.53086 * 109.16189 * 303.02477 * 21 20 2 23 23 O 1.42899 * 109.42107 * 57.60404 * 22 21 20 24 24 C 1.42901 * 114.09685 * 298.84713 * 23 22 21 25 25 H 1.09002 * 109.47326 * 59.99960 * 1 2 3 26 26 H 1.09004 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47552 * 300.00107 * 1 2 3 28 28 H 0.96995 * 120.00202 * 359.97438 * 5 3 2 29 29 H 1.09005 * 109.46084 * 35.02103 * 6 5 3 30 30 H 1.08993 * 109.50171 * 61.43264 * 7 6 5 31 31 H 1.09002 * 109.49628 * 301.33433 * 7 6 5 32 32 H 1.09002 * 109.58851 * 185.57662 * 8 7 6 33 33 H 1.09003 * 109.70662 * 65.22113 * 8 7 6 34 34 H 0.97004 * 119.99976 * 354.25698 * 13 12 10 35 35 H 1.09006 * 109.58146 * 65.92609 * 18 9 8 36 36 H 1.08996 * 109.58709 * 186.35137 * 18 9 8 37 37 H 1.09000 * 109.49771 * 298.56742 * 19 6 5 38 38 H 1.09007 * 109.49505 * 58.65866 * 19 6 5 39 39 H 1.08998 * 109.54328 * 296.82105 * 20 2 1 40 40 H 1.08996 * 109.54404 * 56.99493 * 20 2 1 41 41 H 1.09006 * 109.52093 * 62.92563 * 21 20 2 42 42 H 1.08997 * 109.52757 * 183.11175 * 21 20 2 43 43 H 1.08999 * 109.48359 * 177.58984 * 22 21 20 44 44 H 1.09001 * 109.47956 * 297.60777 * 22 21 20 45 45 H 1.09002 * 109.47960 * 301.16883 * 24 23 22 46 46 H 1.09004 * 109.48218 * 181.14283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4204 0.0000 4 8 2.7330 1.8158 0.9085 5 7 1.7065 2.2513 -1.0095 6 6 2.1955 3.6323 -1.0092 7 6 2.2446 4.1561 -2.4463 8 6 2.7890 5.5880 -2.4453 9 7 1.9746 6.4030 -1.5335 10 6 1.4017 7.5698 -1.9639 11 1 0.4931 7.9276 -1.5025 12 6 1.9886 8.2928 -2.9934 13 7 3.2790 8.1778 -3.2258 14 14 0.9471 9.4292 -4.0486 15 1 -0.4632 9.3795 -3.5864 16 1 1.0188 8.9922 -5.4661 17 1 1.4579 10.8187 -3.9326 18 6 1.7917 5.9452 -0.1494 19 6 1.2540 4.5065 -0.1778 20 6 2.0419 -0.7246 1.2487 21 6 3.5716 -0.7850 1.1994 22 6 4.0057 -1.4792 -0.0941 23 8 3.4707 -0.7726 -1.2151 24 6 2.0429 -0.7246 -1.2472 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.1473 1.9350 -1.7362 29 1 3.1958 3.6632 -0.5770 30 1 1.2407 4.1489 -2.8707 31 1 2.8972 3.5192 -3.0436 32 1 2.7335 6.0008 -3.4527 33 1 3.8254 5.5870 -2.1076 34 1 3.8347 7.6538 -2.6278 35 1 2.7480 5.9706 0.3731 36 1 1.0780 6.5937 0.3586 37 1 0.2593 4.4960 -0.6234 38 1 1.2013 4.1189 0.8397 39 1 1.7269 -0.1819 2.1400 40 1 1.6364 -1.7359 1.2753 41 1 3.9771 0.2265 1.2237 42 1 3.9418 -1.3474 2.0566 43 1 5.0939 -1.4870 -0.1550 44 1 3.6341 -2.5039 -0.0991 45 1 1.6454 -1.7393 -1.2673 46 1 1.7171 -0.1887 -2.1388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611568201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:47 Heat of formation + Delta-G solvation = -100.087004 kcal Electronic energy + Delta-G solvation = -25601.306099 eV Core-core repulsion = 22103.761173 eV Total energy + Delta-G solvation = -3497.544927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88855 -39.91592 -38.76838 -36.26832 -35.51635 -34.13681 -32.97697 -31.88999 -30.88565 -27.90418 -26.97510 -26.04214 -24.72344 -24.08248 -23.37022 -22.31982 -21.26375 -20.29326 -19.43616 -17.98604 -17.45457 -16.96002 -16.69987 -16.28823 -16.12110 -15.97877 -15.40656 -15.37156 -15.23370 -15.17936 -14.98434 -14.45778 -14.17233 -13.62157 -13.51599 -13.46626 -13.18949 -13.00267 -12.90554 -12.86146 -12.64638 -12.52749 -12.14670 -12.05749 -11.90243 -11.84970 -11.63788 -11.55099 -11.46160 -11.30660 -10.70287 -10.50340 -10.35605 -9.99648 -8.99279 -8.27745 -5.42915 1.59943 1.66403 1.67665 1.84276 2.14342 2.65313 2.95982 3.19997 3.45048 3.51141 3.61130 3.74350 3.81376 3.92665 3.98128 4.11534 4.19057 4.25546 4.28206 4.45736 4.46246 4.53044 4.60288 4.65412 4.68102 4.71484 4.73403 4.85913 4.86160 4.91814 4.94414 5.00791 5.01972 5.10281 5.13500 5.18711 5.23382 5.35952 5.42097 5.55293 5.82443 6.21773 6.35979 6.59237 7.01239 7.29973 7.74507 8.18751 8.97600 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.003471 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.893114 B = 8064.945642 C = 8174.038824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.524 3.476 4 O -0.579 6.579 5 N -0.711 5.711 6 C 0.166 3.834 7 C -0.123 4.123 8 C 0.159 3.841 9 N -0.615 5.615 10 C -0.357 4.357 11 H 0.053 0.947 12 C -0.075 4.075 13 N -0.942 5.942 14 Si 1.121 2.879 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.293 1.293 18 C 0.146 3.854 19 C -0.120 4.120 20 C -0.094 4.094 21 C -0.168 4.168 22 C 0.058 3.942 23 O -0.406 6.406 24 C 0.070 3.930 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.410 0.590 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.055 0.945 33 H -0.001 1.001 34 H 0.253 0.747 35 H 0.005 0.995 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -24.135 4.407 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 C 0.312 3.688 4 O -0.459 6.459 5 N -0.362 5.362 6 C 0.060 3.940 7 C -0.163 4.163 8 C 0.032 3.968 9 N -0.340 5.340 10 C -0.487 4.487 11 H 0.070 0.930 12 C -0.271 4.271 13 N -0.584 5.584 14 Si 0.946 3.054 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.220 1.220 18 C 0.020 3.980 19 C -0.160 4.160 20 C -0.132 4.132 21 C -0.206 4.206 22 C -0.018 4.018 23 O -0.325 6.325 24 C -0.007 4.007 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.247 0.753 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.017 0.983 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.198 -22.755 3.607 23.859 hybrid contribution 0.229 -0.523 1.620 1.718 sum -5.969 -23.278 5.227 24.593 Atomic orbital electron populations 1.21812 0.89570 1.04876 1.03131 1.21585 0.99278 0.90792 0.99865 1.21003 0.78827 0.88081 0.80892 1.90621 1.39448 1.78231 1.37571 1.46008 1.53289 1.11215 1.25648 1.20533 0.96699 0.80677 0.96045 1.22138 1.02409 0.96617 0.95102 1.20766 0.91592 0.89816 0.94580 1.44414 1.60311 1.22846 1.06452 1.20294 1.05570 1.01220 1.21569 0.92967 1.27274 0.97245 1.00636 1.01927 1.70855 1.04604 1.41104 1.41852 0.82783 0.73878 0.73843 0.74923 1.19730 1.21034 1.22009 1.21042 0.97053 0.93991 0.85936 1.22202 0.99290 0.95214 0.99305 1.21459 0.95254 1.00860 0.95640 1.22340 0.97021 1.02081 0.99110 1.22731 0.99318 0.95100 0.84642 1.87957 1.21148 1.77177 1.46209 1.22845 0.80727 1.01343 0.95805 0.90762 0.88370 0.92608 0.75349 0.93051 0.90748 0.90416 0.92630 0.98314 0.93731 0.97660 0.92667 0.91409 0.92333 0.92409 0.88161 0.92689 0.89602 0.89080 0.90548 0.88848 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.38 71.98 0.60 -1.07 16 2 C -0.11 -2.03 0.63 -52.84 -0.03 -2.06 16 3 C 0.52 14.70 5.87 87.66 0.51 15.21 16 4 O -0.58 -21.47 13.50 -3.03 -0.04 -21.51 16 5 N -0.71 -19.11 4.85 -442.40 -2.15 -21.26 16 6 C 0.17 5.79 2.41 45.02 0.11 5.90 16 7 C -0.12 -4.47 5.55 30.67 0.17 -4.30 16 8 C 0.16 7.63 4.69 86.36 0.41 8.04 16 9 N -0.62 -31.76 2.85 -698.25 -1.99 -33.75 16 10 C -0.36 -20.25 9.49 84.04 0.80 -19.45 16 11 H 0.05 2.96 7.94 -2.91 -0.02 2.94 16 12 C -0.07 -4.27 4.68 84.86 0.40 -3.87 16 13 N -0.94 -58.05 12.40 21.65 0.27 -57.79 16 14 Si 1.12 50.93 29.99 68.60 2.06 52.98 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 18 C 0.15 6.56 6.54 86.51 0.57 7.12 16 19 C -0.12 -4.42 5.67 30.82 0.17 -4.24 16 20 C -0.09 -1.69 4.45 30.71 0.14 -1.55 16 21 C -0.17 -3.48 5.81 30.68 0.18 -3.30 16 22 C 0.06 1.05 6.84 72.01 0.49 1.54 16 23 O -0.41 -9.13 10.45 -148.98 -1.56 -10.68 16 24 C 0.07 1.08 5.47 72.01 0.39 1.48 16 25 H 0.07 0.78 7.56 -2.39 -0.02 0.76 16 26 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.41 8.33 7.43 -92.71 -0.69 7.64 16 29 H 0.05 2.13 7.58 -2.38 -0.02 2.11 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 2.98 6.29 -2.39 -0.02 2.96 16 33 H 0.00 -0.06 7.86 -2.39 -0.02 -0.08 16 34 H 0.25 16.04 6.71 -92.71 -0.62 15.42 16 35 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.05 2.46 7.93 -2.39 -0.02 2.44 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.06 2.11 8.14 -2.38 -0.02 2.10 16 39 H 0.06 1.23 8.02 -2.39 -0.02 1.21 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.64 5.81 -2.38 -0.01 1.63 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.10 1.41 7.53 -2.39 -0.02 1.40 16 Total: -1.00 -73.98 350.24 1.91 -72.07 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.41 Total: 20.48 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.91 Total: -0.55 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.87 Total: -112.79 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.60 Total: -32.19 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.06 Total: 52.98 kcal Total: -73.98 1.91 -72.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611568201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.019 kcal (2) G-P(sol) polarization free energy of solvation -73.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds