Wall clock time and date at job start Tue Mar 31 2020 03:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.61214 * 2 1 4 4 C 1.54018 * 110.55900 * 122.80403 * 2 1 3 5 5 N 1.46837 * 106.51855 * 90.22467 * 4 2 1 6 6 C 1.34772 * 125.30060 * 198.54906 * 5 4 2 7 7 O 1.21283 * 120.00263 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00070 * 0.02562 * 6 5 4 9 9 H 1.08993 * 109.47053 * 320.00125 * 8 6 5 10 10 N 1.46896 * 109.47032 * 199.99812 * 8 6 5 11 11 C 1.53001 * 109.46688 * 80.00051 * 8 6 5 12 12 C 1.53003 * 109.46992 * 184.99887 * 11 8 6 13 13 C 1.50698 * 109.47278 * 180.02562 * 12 11 8 14 14 H 1.07997 * 120.00126 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00144 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00219 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99947 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47256 * 89.99649 * 17 15 13 19 19 H 1.48502 * 109.46981 * 329.99381 * 17 15 13 20 20 H 1.48506 * 109.46890 * 209.99797 * 17 15 13 21 21 C 1.46143 * 109.39563 * 18.81485 * 5 4 2 22 22 H 1.09003 * 110.95780 * 236.81477 * 21 5 4 23 23 C 1.53557 * 110.96732 * 111.82456 * 21 5 4 24 24 O 1.42877 * 107.34670 * 268.22121 * 23 21 5 25 25 C 1.44205 * 110.74929 * 342.17774 * 24 23 21 26 26 C 1.53967 * 107.98221 * 3.93700 * 25 24 23 27 27 H 1.09000 * 113.07949 * 247.56582 * 26 25 24 28 28 H 1.09000 * 109.47038 * 298.64597 * 1 2 3 29 29 H 1.08998 * 109.46959 * 58.65096 * 1 2 3 30 30 H 1.09000 * 109.46939 * 178.64538 * 1 2 3 31 31 H 1.09003 * 109.46902 * 166.13557 * 3 2 1 32 32 H 1.08993 * 109.47133 * 286.13780 * 3 2 1 33 33 H 1.08999 * 109.46911 * 46.13694 * 3 2 1 34 34 H 1.08994 * 110.04984 * 330.96472 * 4 2 1 35 35 H 1.08997 * 110.04633 * 209.48789 * 4 2 1 36 36 H 1.00899 * 111.00551 * 300.00225 * 10 8 6 37 37 H 1.00903 * 110.99878 * 63.95748 * 10 8 6 38 38 H 1.09007 * 109.47314 * 65.00371 * 11 8 6 39 39 H 1.09000 * 109.47339 * 305.00036 * 11 8 6 40 40 H 1.08998 * 109.46742 * 59.99965 * 12 11 8 41 41 H 1.09000 * 109.47200 * 300.00233 * 12 11 8 42 42 H 0.97005 * 120.00259 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.86658 * 27.66171 * 23 21 5 44 44 H 1.09000 * 109.86925 * 148.78410 * 23 21 5 45 45 H 1.09007 * 110.58675 * 243.93722 * 25 24 23 46 46 H 1.08998 * 109.30574 * 123.19982 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4321 0.0000 4 6 2.0709 -0.7813 1.2121 5 7 2.2227 -2.1753 0.7764 6 6 2.3256 -3.2405 1.5956 7 8 2.4486 -4.3537 1.1303 8 6 2.2877 -3.0484 3.0898 9 1 2.8547 -2.1563 3.3559 10 7 2.8800 -4.2198 3.7493 11 6 0.8366 -2.8855 3.5464 12 6 0.8054 -2.5666 5.0425 13 6 -0.6239 -2.4068 5.4925 14 1 -1.4296 -2.5217 4.7825 15 6 -0.9032 -2.1151 6.8107 16 7 -2.1506 -1.9751 7.2032 17 14 0.4902 -1.9171 8.0389 18 1 0.9207 -0.4964 8.0744 19 1 1.6346 -2.7711 7.6310 20 1 0.0230 -2.3267 9.3878 21 6 2.2512 -2.2269 -0.6839 22 1 1.4688 -2.8826 -1.0661 23 6 3.6405 -2.6387 -1.1921 24 8 4.3861 -1.4399 -1.4121 25 6 3.5072 -0.2997 -1.4961 26 6 2.0726 -0.7838 -1.2161 27 1 1.4228 -0.7218 -2.0890 28 1 -0.3633 0.4927 0.9019 29 1 -0.3633 0.5346 -0.8776 30 1 -0.3633 -1.0274 -0.0243 31 1 3.1304 1.4209 0.2463 32 1 1.9292 1.8727 -0.9871 33 1 1.5300 2.0228 0.7409 34 1 1.3639 -0.7235 2.0397 35 1 3.0366 -0.3776 1.5161 36 1 2.3719 -5.0603 3.5182 37 1 3.8570 -4.3117 3.5141 38 1 0.2912 -3.8109 3.3608 39 1 0.3703 -2.0714 2.9916 40 1 1.3508 -1.6413 5.2282 41 1 1.2717 -3.3808 5.5974 42 1 -2.3471 -1.7695 8.1306 43 1 4.1408 -3.2543 -0.4447 44 1 3.5442 -3.1918 -2.1264 45 1 3.5558 0.1495 -2.4881 46 1 3.7990 0.4362 -0.7469 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709479713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:41 Heat of formation + Delta-G solvation = -83.711477 kcal Electronic energy + Delta-G solvation = -25740.509585 eV Core-core repulsion = 22243.674755 eV Total energy + Delta-G solvation = -3496.834831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52436 -39.13549 -37.02006 -35.40454 -34.20002 -32.78245 -30.87788 -30.49224 -29.22349 -27.55500 -27.02319 -26.23015 -23.85075 -22.97472 -21.66984 -20.16126 -19.46408 -19.19863 -17.43627 -16.71932 -16.67285 -16.23063 -15.77106 -15.47422 -15.33854 -14.67282 -14.54381 -14.14556 -14.01043 -13.80138 -13.59502 -13.12752 -12.78835 -12.66432 -12.56480 -12.34537 -12.26884 -12.03183 -11.95015 -11.73280 -11.66287 -11.14223 -11.01638 -10.93059 -10.87246 -10.76649 -10.39082 -9.93854 -9.78554 -9.66725 -9.59220 -9.12821 -8.73882 -8.52661 -8.42332 -6.00959 -3.98711 2.61708 2.88013 3.34693 3.42995 3.51136 3.59540 3.81063 4.02726 4.41691 4.50299 4.64807 4.67939 4.70404 4.75756 4.86417 4.94655 5.05574 5.09156 5.31705 5.33155 5.34022 5.39272 5.44338 5.45631 5.49767 5.59221 5.61220 5.66327 5.68989 5.77561 5.80622 5.94300 6.09652 6.18523 6.31470 6.45992 6.76352 6.84536 7.22846 7.34204 7.44264 7.57052 7.64455 7.84864 8.13814 8.56206 9.03442 9.62166 11.12452 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.004383 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.735392 B = 6387.238018 C = 7150.499562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.144 4.144 4 C 0.101 3.899 5 N -0.604 5.604 6 C 0.501 3.499 7 O -0.549 6.549 8 C 0.079 3.921 9 H 0.097 0.903 10 N -0.810 5.810 11 C -0.087 4.087 12 C -0.004 4.004 13 C -0.521 4.521 14 H 0.068 0.932 15 C 0.067 3.933 16 N -0.906 5.906 17 Si 0.878 3.122 18 H -0.279 1.279 19 H -0.260 1.260 20 H -0.290 1.290 21 C 0.110 3.890 22 H 0.094 0.906 23 C 0.051 3.949 24 O -0.382 6.382 25 C 0.046 3.954 26 C -0.121 4.121 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.350 0.650 37 H 0.335 0.665 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.008 0.992 41 H 0.034 0.966 42 H 0.262 0.738 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.565 6.107 -18.572 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.022 4.022 5 N -0.338 5.338 6 C 0.289 3.711 7 O -0.426 6.426 8 C -0.037 4.037 9 H 0.115 0.885 10 N -0.338 5.338 11 C -0.125 4.125 12 C -0.041 4.041 13 C -0.559 4.559 14 H 0.087 0.913 15 C -0.134 4.134 16 N -0.545 5.545 17 Si 0.705 3.295 18 H -0.205 1.205 19 H -0.184 1.184 20 H -0.216 1.216 21 C 0.005 3.995 22 H 0.112 0.888 23 C -0.027 4.027 24 O -0.302 6.302 25 C -0.030 4.030 26 C -0.140 4.140 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.147 0.853 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.558 5.833 -17.902 21.586 hybrid contribution 0.441 -0.197 -0.367 0.606 sum 10.999 5.636 -18.268 22.056 Atomic orbital electron populations 1.21852 0.92606 1.02621 1.02657 1.21475 0.96899 0.95322 0.93108 1.21992 1.01180 0.94196 1.02789 1.22374 1.01556 0.80519 0.97761 1.48225 1.72879 1.07464 1.05218 1.22447 0.74548 0.83074 0.91027 1.90660 1.50301 1.23756 1.77917 1.21844 1.00718 0.96188 0.84915 0.88523 1.59045 1.06721 1.06284 1.61739 1.21482 0.89527 1.01363 1.00124 1.19484 0.97439 0.96553 0.90626 1.21157 0.91465 1.48037 0.95222 0.91341 1.24998 0.95340 0.94709 0.98341 1.69922 1.18125 1.49450 1.17046 0.86795 0.83382 0.78787 0.80516 1.20491 1.18406 1.21587 1.22411 0.97877 0.96832 0.82365 0.88764 1.23253 0.91267 0.87755 1.00421 1.88396 1.32505 1.15349 1.93933 1.23714 0.87663 0.89607 1.02005 1.23463 0.97905 0.93619 0.98977 0.87203 0.91303 0.92196 0.92184 0.91517 0.91765 0.91355 0.88863 0.91213 0.83582 0.85269 0.92199 0.92213 0.97389 0.94762 0.92835 0.89594 0.91592 0.91328 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.48 37.16 0.31 -0.94 16 2 C -0.07 -0.58 0.77 -153.18 -0.12 -0.70 16 3 C -0.14 -0.97 7.57 37.16 0.28 -0.69 16 4 C 0.10 1.11 5.16 -3.33 -0.02 1.09 16 5 N -0.60 -7.80 3.02 -164.04 -0.50 -8.29 16 6 C 0.50 7.80 6.68 -10.98 -0.07 7.73 16 7 O -0.55 -9.83 15.96 5.56 0.09 -9.74 16 8 C 0.08 1.27 2.47 -68.86 -0.17 1.10 16 9 H 0.10 1.46 7.66 -51.93 -0.40 1.06 16 10 N -0.81 -12.90 8.44 -5.66 -0.05 -12.95 16 11 C -0.09 -1.67 4.66 -26.73 -0.12 -1.79 16 12 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 13 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 14 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 16 N -0.91 -27.90 13.96 55.43 0.77 -27.13 16 17 Si 0.88 21.76 27.47 -169.99 -4.67 17.10 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 C 0.11 1.25 3.61 -66.86 -0.24 1.01 16 22 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 23 C 0.05 0.60 7.35 37.45 0.28 0.87 16 24 O -0.38 -4.63 11.32 -35.23 -0.40 -5.03 16 25 C 0.05 0.40 6.77 37.66 0.25 0.66 16 26 C -0.12 -1.03 3.44 -88.34 -0.30 -1.33 16 27 H 0.11 0.76 8.06 -51.93 -0.42 0.34 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.43 5.80 -51.93 -0.30 0.13 16 32 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.09 1.13 5.85 -51.93 -0.30 0.83 16 35 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 36 H 0.35 5.68 8.58 -39.29 -0.34 5.34 16 37 H 0.34 4.65 9.06 -39.29 -0.36 4.29 16 38 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 39 H 0.06 1.09 6.49 -51.93 -0.34 0.76 16 40 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 41 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.09 1.19 7.24 -51.93 -0.38 0.81 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.72 4.83 -51.93 -0.25 0.47 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -32.80 352.02 -7.51 -40.31 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.61 Total: 6.76 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.46 Total: -6.33 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.23 Total: -48.37 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.31 Total: -14.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.80 -7.51 -40.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709479713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.400 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds