Wall clock time and date at job start Tue Mar 31 2020 03:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.61214 * 2 1 4 4 C 1.54018 * 110.55900 * 122.80403 * 2 1 3 5 5 N 1.46837 * 106.51855 * 90.22467 * 4 2 1 6 6 C 1.34772 * 125.30060 * 198.54906 * 5 4 2 7 7 O 1.21283 * 120.00263 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00070 * 0.02562 * 6 5 4 9 9 H 1.08993 * 109.47053 * 320.00125 * 8 6 5 10 10 N 1.46896 * 109.47032 * 199.99812 * 8 6 5 11 11 C 1.53001 * 109.46688 * 80.00051 * 8 6 5 12 12 C 1.53003 * 109.46992 * 184.99887 * 11 8 6 13 13 C 1.50698 * 109.47278 * 180.02562 * 12 11 8 14 14 H 1.07997 * 120.00126 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00144 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00219 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99947 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47256 * 89.99649 * 17 15 13 19 19 H 1.48502 * 109.46981 * 329.99381 * 17 15 13 20 20 H 1.48506 * 109.46890 * 209.99797 * 17 15 13 21 21 C 1.46143 * 109.39563 * 18.81485 * 5 4 2 22 22 H 1.09003 * 110.95780 * 236.81477 * 21 5 4 23 23 C 1.53557 * 110.96732 * 111.82456 * 21 5 4 24 24 O 1.42877 * 107.34670 * 268.22121 * 23 21 5 25 25 C 1.44205 * 110.74929 * 342.17774 * 24 23 21 26 26 C 1.53967 * 107.98221 * 3.93700 * 25 24 23 27 27 H 1.09000 * 113.07949 * 247.56582 * 26 25 24 28 28 H 1.09000 * 109.47038 * 298.64597 * 1 2 3 29 29 H 1.08998 * 109.46959 * 58.65096 * 1 2 3 30 30 H 1.09000 * 109.46939 * 178.64538 * 1 2 3 31 31 H 1.09003 * 109.46902 * 166.13557 * 3 2 1 32 32 H 1.08993 * 109.47133 * 286.13780 * 3 2 1 33 33 H 1.08999 * 109.46911 * 46.13694 * 3 2 1 34 34 H 1.08994 * 110.04984 * 330.96472 * 4 2 1 35 35 H 1.08997 * 110.04633 * 209.48789 * 4 2 1 36 36 H 1.00899 * 111.00551 * 300.00225 * 10 8 6 37 37 H 1.00903 * 110.99878 * 63.95748 * 10 8 6 38 38 H 1.09007 * 109.47314 * 65.00371 * 11 8 6 39 39 H 1.09000 * 109.47339 * 305.00036 * 11 8 6 40 40 H 1.08998 * 109.46742 * 59.99965 * 12 11 8 41 41 H 1.09000 * 109.47200 * 300.00233 * 12 11 8 42 42 H 0.97005 * 120.00259 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.86658 * 27.66171 * 23 21 5 44 44 H 1.09000 * 109.86925 * 148.78410 * 23 21 5 45 45 H 1.09007 * 110.58675 * 243.93722 * 25 24 23 46 46 H 1.08998 * 109.30574 * 123.19982 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4321 0.0000 4 6 2.0709 -0.7813 1.2121 5 7 2.2227 -2.1753 0.7764 6 6 2.3256 -3.2405 1.5956 7 8 2.4486 -4.3537 1.1303 8 6 2.2877 -3.0484 3.0898 9 1 2.8547 -2.1563 3.3559 10 7 2.8800 -4.2198 3.7493 11 6 0.8366 -2.8855 3.5464 12 6 0.8054 -2.5666 5.0425 13 6 -0.6239 -2.4068 5.4925 14 1 -1.4296 -2.5217 4.7825 15 6 -0.9032 -2.1151 6.8107 16 7 -2.1506 -1.9751 7.2032 17 14 0.4902 -1.9171 8.0389 18 1 0.9207 -0.4964 8.0744 19 1 1.6346 -2.7711 7.6310 20 1 0.0230 -2.3267 9.3878 21 6 2.2512 -2.2269 -0.6839 22 1 1.4688 -2.8826 -1.0661 23 6 3.6405 -2.6387 -1.1921 24 8 4.3861 -1.4399 -1.4121 25 6 3.5072 -0.2997 -1.4961 26 6 2.0726 -0.7838 -1.2161 27 1 1.4228 -0.7218 -2.0890 28 1 -0.3633 0.4927 0.9019 29 1 -0.3633 0.5346 -0.8776 30 1 -0.3633 -1.0274 -0.0243 31 1 3.1304 1.4209 0.2463 32 1 1.9292 1.8727 -0.9871 33 1 1.5300 2.0228 0.7409 34 1 1.3639 -0.7235 2.0397 35 1 3.0366 -0.3776 1.5161 36 1 2.3719 -5.0603 3.5182 37 1 3.8570 -4.3117 3.5141 38 1 0.2912 -3.8109 3.3608 39 1 0.3703 -2.0714 2.9916 40 1 1.3508 -1.6413 5.2282 41 1 1.2717 -3.3808 5.5974 42 1 -2.3471 -1.7695 8.1306 43 1 4.1408 -3.2543 -0.4447 44 1 3.5442 -3.1918 -2.1264 45 1 3.5558 0.1495 -2.4881 46 1 3.7990 0.4362 -0.7469 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709479713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:40 Heat of formation + Delta-G solvation = -107.905082 kcal Electronic energy + Delta-G solvation = -25741.558699 eV Core-core repulsion = 22243.674755 eV Total energy + Delta-G solvation = -3497.883944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43372 -40.29013 -37.87154 -36.91785 -35.13756 -34.80749 -32.32814 -31.74273 -30.00053 -28.49535 -28.18234 -27.36272 -25.34180 -23.80262 -22.86293 -21.81869 -20.44490 -20.11504 -18.93537 -18.39202 -17.68409 -17.11998 -16.98965 -16.56291 -16.38509 -16.18735 -15.58316 -15.41434 -15.17470 -14.90545 -14.73342 -14.49359 -14.14320 -13.95157 -13.58844 -13.51264 -13.24754 -13.05705 -12.89953 -12.79920 -12.65215 -12.55887 -12.47644 -12.03527 -11.83657 -11.76490 -11.63582 -11.62080 -11.46245 -11.29653 -11.15263 -10.71174 -10.45537 -9.78498 -9.74157 -8.25103 -6.28377 1.37862 1.39357 1.43352 1.57004 1.83281 2.41378 2.79964 3.00962 3.11571 3.26625 3.46277 3.66995 3.71776 3.81748 3.94392 3.99160 4.05015 4.15622 4.19309 4.26119 4.37547 4.51568 4.62806 4.66608 4.70189 4.72743 4.77318 4.77629 4.86407 4.87214 5.00208 5.07381 5.11710 5.16729 5.28154 5.35656 5.44684 5.46706 5.62847 5.72193 5.95049 6.00684 6.31182 6.33040 6.43577 6.79509 6.94395 7.36323 8.91671 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.004383 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.735392 B = 6387.238018 C = 7150.499562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.141 4.141 4 C 0.092 3.908 5 N -0.600 5.600 6 C 0.499 3.501 7 O -0.577 6.577 8 C 0.089 3.911 9 H 0.112 0.888 10 N -0.816 5.816 11 C -0.076 4.076 12 C 0.005 3.995 13 C -0.530 4.530 14 H 0.029 0.971 15 C 0.006 3.994 16 N -0.954 5.954 17 Si 0.948 3.052 18 H -0.263 1.263 19 H -0.247 1.247 20 H -0.289 1.289 21 C 0.100 3.900 22 H 0.089 0.911 23 C 0.056 3.944 24 O -0.401 6.401 25 C 0.042 3.958 26 C -0.108 4.108 27 H 0.133 0.867 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.347 0.653 37 H 0.348 0.652 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.028 0.972 42 H 0.265 0.735 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.521 7.929 -19.578 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.031 4.031 5 N -0.332 5.332 6 C 0.287 3.713 7 O -0.457 6.457 8 C -0.027 4.027 9 H 0.130 0.870 10 N -0.345 5.345 11 C -0.114 4.114 12 C -0.033 4.033 13 C -0.568 4.568 14 H 0.047 0.953 15 C -0.190 4.190 16 N -0.595 5.595 17 Si 0.772 3.228 18 H -0.188 1.188 19 H -0.170 1.170 20 H -0.215 1.215 21 C -0.004 4.004 22 H 0.107 0.893 23 C -0.022 4.022 24 O -0.321 6.321 25 C -0.033 4.033 26 C -0.126 4.126 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.529 7.691 -18.939 23.975 hybrid contribution -0.255 -0.755 -0.119 0.806 sum 12.274 6.936 -19.058 23.706 Atomic orbital electron populations 1.21840 0.92990 1.01516 1.03252 1.21461 0.96473 0.96295 0.91842 1.21989 1.01307 0.92487 1.04055 1.22601 1.01988 0.79757 0.98708 1.48228 1.71244 1.07707 1.06016 1.22202 0.74776 0.83275 0.91011 1.90643 1.51891 1.24937 1.78256 1.21621 0.98551 0.96967 0.85540 0.86978 1.59035 1.07603 1.06057 1.61838 1.21244 0.91872 1.00500 0.97800 1.19351 0.94199 0.96784 0.92959 1.21501 0.93039 1.47430 0.94788 0.95310 1.25952 0.98037 0.94401 1.00610 1.70075 1.20647 1.51002 1.17744 0.85681 0.80039 0.79693 0.77407 1.18780 1.17014 1.21493 1.22584 0.97604 0.98944 0.81275 0.89343 1.23127 0.90961 0.87849 1.00246 1.88374 1.33677 1.16055 1.94033 1.23941 0.86970 0.88671 1.03748 1.23499 0.98466 0.91190 0.99477 0.84877 0.92244 0.90025 0.94198 0.90981 0.89789 0.91373 0.90257 0.90058 0.83948 0.83841 0.94183 0.91745 0.96043 0.95333 0.92634 0.92123 0.90432 0.89014 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.48 71.98 0.61 -1.65 16 2 C -0.06 -0.89 0.77 -51.32 -0.04 -0.93 16 3 C -0.14 -1.42 7.57 71.98 0.54 -0.87 16 4 C 0.09 1.88 5.16 86.66 0.45 2.33 16 5 N -0.60 -15.06 3.02 -791.30 -2.39 -17.45 16 6 C 0.50 15.48 6.68 87.66 0.59 16.06 16 7 O -0.58 -20.90 15.96 -3.04 -0.05 -20.94 16 8 C 0.09 2.80 2.47 44.17 0.11 2.91 16 9 H 0.11 3.18 7.66 -2.39 -0.02 3.16 16 10 N -0.82 -25.42 8.44 -171.81 -1.45 -26.87 16 11 C -0.08 -2.93 4.66 30.60 0.14 -2.79 16 12 C 0.00 0.21 3.93 29.85 0.12 0.33 16 13 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 14 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 15 C 0.01 0.38 5.47 84.65 0.46 0.84 16 16 N -0.95 -60.01 13.96 21.44 0.30 -59.71 16 17 Si 0.95 44.48 27.47 68.60 1.88 46.37 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 C 0.10 2.16 3.61 45.88 0.17 2.32 16 22 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 23 C 0.06 1.27 7.35 72.17 0.53 1.80 16 24 O -0.40 -8.91 11.32 -148.98 -1.69 -10.59 16 25 C 0.04 0.60 6.77 72.31 0.49 1.09 16 26 C -0.11 -1.53 3.44 -9.32 -0.03 -1.57 16 27 H 0.13 1.34 8.06 -2.39 -0.02 1.32 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.68 5.80 -2.39 -0.01 0.66 16 32 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 33 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 34 H 0.08 1.87 5.85 -2.39 -0.01 1.85 16 35 H 0.08 1.50 7.65 -2.39 -0.02 1.48 16 36 H 0.35 11.26 8.58 -89.69 -0.77 10.49 16 37 H 0.35 9.29 9.06 -89.69 -0.81 8.47 16 38 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 39 H 0.06 2.40 6.49 -2.39 -0.02 2.38 16 40 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 41 H 0.03 1.36 6.81 -2.39 -0.02 1.34 16 42 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 43 H 0.06 1.68 7.24 -2.39 -0.02 1.67 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.10 1.22 4.83 -2.39 -0.01 1.21 16 Total: -1.00 -72.13 352.02 0.34 -71.79 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.65 Total: 27.73 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 4.38 Total: -10.33 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.54 Total: -104.03 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.74 Total: -31.54 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -72.13 0.34 -71.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709479713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.110 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds