Wall clock time and date at job start Tue Mar 31 2020 03:36:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53009 * 110.75143 * 2 1
4 4 C 1.54380 * 110.84740 * 123.47254 * 2 1 3
5 5 O 1.43236 * 107.58691 * 96.83399 * 4 2 1
6 6 C 1.43648 * 109.97223 * 358.28588 * 5 4 2
7 7 H 1.08995 * 110.31003 * 265.51483 * 6 5 4
8 8 C 1.53007 * 110.30704 * 143.44211 * 6 5 4
9 9 C 1.50706 * 109.46748 * 66.45777 * 8 6 5
10 10 O 1.21277 * 120.00350 * 359.97438 * 9 8 6
11 11 N 1.34780 * 119.99495 * 180.02562 * 9 8 6
12 12 C 1.46962 * 120.59527 * 359.71569 * 11 9 8
13 13 C 1.53811 * 108.39750 * 124.76098 * 12 11 9
14 14 N 1.46962 * 108.57984 * 49.63728 * 13 12 11
15 15 C 1.36936 * 120.59282 * 124.62223 * 14 13 12
16 16 H 1.08001 * 119.99799 * 208.22942 * 15 14 13
17 17 C 1.38811 * 120.00293 * 28.23168 * 15 14 13
18 18 N 1.31620 * 119.99569 * 17.57633 * 17 15 14
19 19 Si 1.86803 * 120.00268 * 197.58148 * 17 15 14
20 20 H 1.48496 * 109.47148 * 59.99709 * 19 17 15
21 21 H 1.48496 * 109.47124 * 180.02562 * 19 17 15
22 22 H 1.48507 * 109.46927 * 299.99600 * 19 17 15
23 23 C 1.46966 * 118.81246 * 304.64783 * 14 13 12
24 24 C 1.46967 * 120.59055 * 180.02562 * 11 9 8
25 25 C 1.55302 * 110.84574 * 236.52880 * 2 1 3
26 26 H 1.09006 * 109.46903 * 60.69532 * 1 2 3
27 27 H 1.09004 * 109.47055 * 300.70170 * 1 2 3
28 28 H 1.08991 * 109.47051 * 180.70175 * 1 2 3
29 29 H 1.08994 * 109.46918 * 59.30235 * 3 2 1
30 30 H 1.09001 * 109.46729 * 179.30084 * 3 2 1
31 31 H 1.08999 * 109.47094 * 299.29867 * 3 2 1
32 32 H 1.09004 * 109.83159 * 216.34429 * 4 2 1
33 33 H 1.08996 * 109.83316 * 337.23213 * 4 2 1
34 34 H 1.08997 * 109.46857 * 186.45143 * 8 6 5
35 35 H 1.08993 * 109.47403 * 306.45697 * 8 6 5
36 36 H 1.09009 * 109.60933 * 244.54450 * 12 11 9
37 37 H 1.09005 * 109.61211 * 5.05115 * 12 11 9
38 38 H 1.08998 * 109.73979 * 289.84322 * 13 12 11
39 39 H 1.09009 * 109.67180 * 169.38390 * 13 12 11
40 40 H 0.97004 * 119.99800 * 179.97438 * 18 17 15
41 41 H 1.08996 * 109.60606 * 295.47837 * 23 14 13
42 42 H 1.09004 * 109.60915 * 174.96598 * 23 14 13
43 43 H 1.08999 * 109.60687 * 354.94239 * 24 11 9
44 44 H 1.09000 * 109.61163 * 115.45416 * 24 11 9
45 45 H 1.08997 * 111.12789 * 33.86150 * 25 2 1
46 46 H 1.09011 * 111.12607 * 158.02596 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0721 1.4308 0.0000
4 6 2.0794 -0.7957 1.2035
5 8 2.3853 -2.1178 0.7449
6 6 2.0401 -2.2476 -0.6435
7 1 1.0385 -2.6649 -0.7468
8 6 3.0600 -3.1321 -1.3637
9 6 2.9633 -4.5410 -0.8375
10 8 2.1584 -4.8110 0.0286
11 7 3.7721 -5.5007 -1.3287
12 6 4.7486 -5.1891 -2.3819
13 6 6.1428 -5.6172 -1.8932
14 7 6.0597 -6.9953 -1.3896
15 6 6.8808 -7.9706 -1.8894
16 1 6.5570 -9.0010 -1.8903
17 6 8.1293 -7.6351 -2.3949
18 7 8.6713 -6.4743 -2.0928
19 14 9.0402 -8.8308 -3.5040
20 1 8.2243 -9.1028 -4.7145
21 1 10.3417 -8.2397 -3.9061
22 1 9.2789 -10.1009 -2.7723
23 6 5.0793 -7.3081 -0.3404
24 6 3.6886 -6.8790 -0.8255
25 6 2.0827 -0.8005 -1.2107
26 1 -0.3633 0.5030 -0.8962
27 1 -0.3633 0.5247 0.8837
28 1 -0.3633 -1.0275 0.0126
29 1 1.7103 1.9564 0.8836
30 1 3.1618 1.4064 0.0125
31 1 1.7306 1.9488 -0.8962
32 1 2.9829 -0.3173 1.5817
33 1 1.3275 -0.8409 1.9912
34 1 2.8522 -3.1289 -2.4337
35 1 4.0640 -2.7465 -1.1874
36 1 4.4931 -5.7344 -3.2906
37 1 4.7422 -4.1175 -2.5813
38 1 6.4719 -4.9544 -1.0929
39 1 6.8514 -5.5720 -2.7203
40 1 9.5439 -6.2400 -2.4457
41 1 5.3328 -6.7658 0.5705
42 1 5.0833 -8.3803 -0.1440
43 1 2.9820 -6.9236 0.0032
44 1 3.3596 -7.5415 -1.6261
45 1 1.4335 -0.6961 -2.0800
46 1 3.1037 -0.5005 -1.4469
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000717073973.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:28
Heat of formation + Delta-G solvation = -62.443056 kcal
Electronic energy + Delta-G solvation = -25025.529300 eV
Core-core repulsion = 21529.616737 eV
Total energy + Delta-G solvation = -3495.912563 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.25246 -39.17075 -36.69794 -34.64477 -33.79374 -32.40489 -31.17229 -30.08801
-27.83893 -27.61411 -26.58967 -25.92021 -23.60774 -22.82106 -21.54971 -20.35426
-19.56620 -18.41335 -17.16323 -16.55674 -16.07169 -15.58676 -15.35451 -15.03315
-14.68359 -14.50381 -14.15730 -13.71870 -13.65870 -13.40862 -13.35739 -13.25105
-13.05792 -12.70706 -12.51932 -12.16909 -11.87650 -11.67564 -11.62099 -11.42529
-11.31595 -10.94209 -10.91221 -10.80503 -10.72178 -10.62235 -10.47985 -10.20694
-10.00244 -9.82450 -9.40312 -9.21854 -8.57565 -8.15699 -6.69247 -5.84924
-3.28870 3.12239 3.35295 3.41048 3.41909 3.52246 3.81029 4.14521
4.44669 4.47681 4.61827 4.79262 4.96499 5.06967 5.09113 5.23988
5.30580 5.32523 5.38062 5.39863 5.45914 5.54068 5.59898 5.63039
5.69607 5.71930 5.83794 5.84156 5.90232 5.91718 6.00745 6.01608
6.14205 6.15972 6.26660 6.38978 6.48690 6.83339 6.98763 7.13619
7.25415 7.47744 7.72650 8.01666 8.36871 8.70173 9.13027 9.75755
10.33354 11.22758
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.029989 B = 0.003234 C = 0.003068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.461545 B = 8655.721191 C = 9125.610585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.102 4.102
3 C -0.135 4.135
4 C 0.057 3.943
5 O -0.360 6.360
6 C 0.102 3.898
7 H 0.075 0.925
8 C -0.140 4.140
9 C 0.512 3.488
10 O -0.548 6.548
11 N -0.601 5.601
12 C 0.080 3.920
13 C 0.157 3.843
14 N -0.591 5.591
15 C -0.255 4.255
16 H 0.067 0.933
17 C 0.003 3.997
18 N -0.903 5.903
19 Si 0.905 3.095
20 H -0.283 1.283
21 H -0.290 1.290
22 H -0.282 1.282
23 C 0.132 3.868
24 C 0.097 3.903
25 C -0.145 4.145
26 H 0.058 0.942
27 H 0.058 0.942
28 H 0.060 0.940
29 H 0.057 0.943
30 H 0.059 0.941
31 H 0.058 0.942
32 H 0.067 0.933
33 H 0.065 0.935
34 H 0.101 0.899
35 H 0.100 0.900
36 H 0.063 0.937
37 H 0.070 0.930
38 H 0.023 0.977
39 H 0.099 0.901
40 H 0.255 0.745
41 H 0.024 0.976
42 H 0.065 0.935
43 H 0.081 0.919
44 H 0.060 0.940
45 H 0.083 0.917
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.549 14.337 -0.132 19.727
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.102 4.102
3 C -0.193 4.193
4 C -0.020 4.020
5 O -0.279 6.279
6 C 0.044 3.956
7 H 0.093 0.907
8 C -0.180 4.180
9 C 0.299 3.701
10 O -0.426 6.426
11 N -0.334 5.334
12 C -0.044 4.044
13 C 0.031 3.969
14 N -0.314 5.314
15 C -0.385 4.385
16 H 0.085 0.915
17 C -0.196 4.196
18 N -0.547 5.547
19 Si 0.734 3.266
20 H -0.210 1.210
21 H -0.216 1.216
22 H -0.208 1.208
23 C 0.005 3.995
24 C -0.027 4.027
25 C -0.182 4.182
26 H 0.077 0.923
27 H 0.077 0.923
28 H 0.079 0.921
29 H 0.076 0.924
30 H 0.079 0.921
31 H 0.078 0.922
32 H 0.085 0.915
33 H 0.083 0.917
34 H 0.119 0.881
35 H 0.118 0.882
36 H 0.081 0.919
37 H 0.089 0.911
38 H 0.041 0.959
39 H 0.117 0.883
40 H 0.065 0.935
41 H 0.042 0.958
42 H 0.084 0.916
43 H 0.099 0.901
44 H 0.078 0.922
45 H 0.102 0.898
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -13.689 14.069 0.408 19.634
hybrid contribution 0.628 -0.368 -0.764 1.055
sum -13.061 13.701 -0.355 18.933
Atomic orbital electron populations
1.21829 0.93427 1.02374 1.01942 1.22120 0.96481 0.96230 0.95383
1.21752 1.01077 0.94416 1.02022 1.23241 0.99556 0.83411 0.95755
1.88588 1.85376 1.29369 1.24611 1.22737 0.97667 0.93587 0.81599
0.90708 1.21872 1.01926 0.93329 1.00911 1.20403 0.80655 0.86707
0.82293 1.90652 1.37900 1.82476 1.31611 1.48074 1.36608 1.09511
1.39184 1.22743 0.92207 0.99539 0.89935 1.21254 0.91153 0.85294
0.99240 1.43979 1.40439 1.06487 1.40528 1.19173 0.94866 0.89382
1.35042 0.91537 1.25064 0.95829 0.97401 1.01285 1.70015 1.16548
1.22729 1.45383 0.86337 0.78759 0.80512 0.80969 1.20971 1.21607
1.20837 1.21309 0.88061 0.98782 0.91374 1.22164 0.99894 0.81539
0.99145 1.23543 1.02358 0.94472 0.97853 0.92294 0.92291 0.92097
0.92355 0.92149 0.92246 0.91517 0.91715 0.88066 0.88203 0.91903
0.91123 0.95853 0.88268 0.93463 0.95850 0.91647 0.90069 0.92186
0.89836 0.89965
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.11 8.44 37.16 0.31 -0.79 16
2 C -0.10 -0.91 0.94 -152.56 -0.14 -1.05 16
3 C -0.14 -0.97 8.51 37.16 0.32 -0.65 16
4 C 0.06 0.66 6.99 37.88 0.26 0.92 16
5 O -0.36 -5.62 10.41 -47.11 -0.49 -6.11 16
6 C 0.10 1.33 2.63 -25.40 -0.07 1.26 16
7 H 0.08 1.03 7.65 -51.93 -0.40 0.63 16
8 C -0.14 -1.92 3.80 -27.88 -0.11 -2.02 16
9 C 0.51 9.29 7.60 -10.98 -0.08 9.21 16
10 O -0.55 -11.62 14.94 -6.32 -0.09 -11.72 16
11 N -0.60 -11.25 2.94 -172.18 -0.51 -11.76 16
12 C 0.08 1.44 6.53 -3.37 -0.02 1.42 16
13 C 0.16 3.60 5.54 -3.37 -0.02 3.58 16
14 N -0.59 -14.68 2.97 -171.74 -0.51 -15.19 16
15 C -0.26 -6.86 9.57 -15.06 -0.14 -7.00 16
16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16
17 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16
18 N -0.90 -25.47 11.20 55.49 0.62 -24.85 16
19 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16
20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
23 C 0.13 2.86 6.67 -3.57 -0.02 2.84 16
24 C 0.10 1.86 6.59 -3.57 -0.02 1.84 16
25 C -0.14 -1.36 5.57 -24.18 -0.13 -1.49 16
26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.06 0.56 7.56 -51.93 -0.39 0.16 16
29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
30 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16
31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.07 0.71 7.80 -51.93 -0.40 0.31 16
33 H 0.06 0.70 7.84 -51.93 -0.41 0.30 16
34 H 0.10 1.10 7.90 -51.93 -0.41 0.69 16
35 H 0.10 1.35 7.73 -51.93 -0.40 0.94 16
36 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16
37 H 0.07 1.04 5.91 -51.93 -0.31 0.73 16
38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
39 H 0.10 2.48 5.98 -51.92 -0.31 2.17 16
40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16
41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16
43 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16
44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
45 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16
46 H 0.08 0.74 7.97 -51.92 -0.41 0.32 16
LS Contribution 356.42 15.07 5.37 5.37
Total: -1.00 -32.07 356.42 -8.58 -40.66
By element:
Atomic # 1 Polarization: 7.41 SS G_CDS: -7.99 Total: -0.58 kcal
Atomic # 6 Polarization: 8.01 SS G_CDS: 0.04 Total: 8.06 kcal
Atomic # 7 Polarization: -51.40 SS G_CDS: -0.39 Total: -51.80 kcal
Atomic # 8 Polarization: -17.24 SS G_CDS: -0.58 Total: -17.83 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -32.07 -8.58 -40.66 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000717073973.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.787 kcal
(2) G-P(sol) polarization free energy of solvation -32.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds