Wall clock time and date at job start Tue Mar 31 2020 03:36:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53009 * 110.75143 * 2 1
4 4 C 1.54380 * 110.84740 * 123.47254 * 2 1 3
5 5 O 1.43236 * 107.58691 * 96.83399 * 4 2 1
6 6 C 1.43648 * 109.97223 * 358.28588 * 5 4 2
7 7 H 1.08995 * 110.31003 * 265.51483 * 6 5 4
8 8 C 1.53007 * 110.30704 * 143.44211 * 6 5 4
9 9 C 1.50706 * 109.46748 * 66.45777 * 8 6 5
10 10 O 1.21277 * 120.00350 * 359.97438 * 9 8 6
11 11 N 1.34780 * 119.99495 * 180.02562 * 9 8 6
12 12 C 1.46962 * 120.59527 * 359.71569 * 11 9 8
13 13 C 1.53811 * 108.39750 * 124.76098 * 12 11 9
14 14 N 1.46962 * 108.57984 * 49.63728 * 13 12 11
15 15 C 1.36936 * 120.59282 * 124.62223 * 14 13 12
16 16 H 1.08001 * 119.99799 * 208.22942 * 15 14 13
17 17 C 1.38811 * 120.00293 * 28.23168 * 15 14 13
18 18 N 1.31620 * 119.99569 * 17.57633 * 17 15 14
19 19 Si 1.86803 * 120.00268 * 197.58148 * 17 15 14
20 20 H 1.48496 * 109.47148 * 59.99709 * 19 17 15
21 21 H 1.48496 * 109.47124 * 180.02562 * 19 17 15
22 22 H 1.48507 * 109.46927 * 299.99600 * 19 17 15
23 23 C 1.46966 * 118.81246 * 304.64783 * 14 13 12
24 24 C 1.46967 * 120.59055 * 180.02562 * 11 9 8
25 25 C 1.55302 * 110.84574 * 236.52880 * 2 1 3
26 26 H 1.09006 * 109.46903 * 60.69532 * 1 2 3
27 27 H 1.09004 * 109.47055 * 300.70170 * 1 2 3
28 28 H 1.08991 * 109.47051 * 180.70175 * 1 2 3
29 29 H 1.08994 * 109.46918 * 59.30235 * 3 2 1
30 30 H 1.09001 * 109.46729 * 179.30084 * 3 2 1
31 31 H 1.08999 * 109.47094 * 299.29867 * 3 2 1
32 32 H 1.09004 * 109.83159 * 216.34429 * 4 2 1
33 33 H 1.08996 * 109.83316 * 337.23213 * 4 2 1
34 34 H 1.08997 * 109.46857 * 186.45143 * 8 6 5
35 35 H 1.08993 * 109.47403 * 306.45697 * 8 6 5
36 36 H 1.09009 * 109.60933 * 244.54450 * 12 11 9
37 37 H 1.09005 * 109.61211 * 5.05115 * 12 11 9
38 38 H 1.08998 * 109.73979 * 289.84322 * 13 12 11
39 39 H 1.09009 * 109.67180 * 169.38390 * 13 12 11
40 40 H 0.97004 * 119.99800 * 179.97438 * 18 17 15
41 41 H 1.08996 * 109.60606 * 295.47837 * 23 14 13
42 42 H 1.09004 * 109.60915 * 174.96598 * 23 14 13
43 43 H 1.08999 * 109.60687 * 354.94239 * 24 11 9
44 44 H 1.09000 * 109.61163 * 115.45416 * 24 11 9
45 45 H 1.08997 * 111.12789 * 33.86150 * 25 2 1
46 46 H 1.09011 * 111.12607 * 158.02596 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0721 1.4308 0.0000
4 6 2.0794 -0.7957 1.2035
5 8 2.3853 -2.1178 0.7449
6 6 2.0401 -2.2476 -0.6435
7 1 1.0385 -2.6649 -0.7468
8 6 3.0600 -3.1321 -1.3637
9 6 2.9633 -4.5410 -0.8375
10 8 2.1584 -4.8110 0.0286
11 7 3.7721 -5.5007 -1.3287
12 6 4.7486 -5.1891 -2.3819
13 6 6.1428 -5.6172 -1.8932
14 7 6.0597 -6.9953 -1.3896
15 6 6.8808 -7.9706 -1.8894
16 1 6.5570 -9.0010 -1.8903
17 6 8.1293 -7.6351 -2.3949
18 7 8.6713 -6.4743 -2.0928
19 14 9.0402 -8.8308 -3.5040
20 1 8.2243 -9.1028 -4.7145
21 1 10.3417 -8.2397 -3.9061
22 1 9.2789 -10.1009 -2.7723
23 6 5.0793 -7.3081 -0.3404
24 6 3.6886 -6.8790 -0.8255
25 6 2.0827 -0.8005 -1.2107
26 1 -0.3633 0.5030 -0.8962
27 1 -0.3633 0.5247 0.8837
28 1 -0.3633 -1.0275 0.0126
29 1 1.7103 1.9564 0.8836
30 1 3.1618 1.4064 0.0125
31 1 1.7306 1.9488 -0.8962
32 1 2.9829 -0.3173 1.5817
33 1 1.3275 -0.8409 1.9912
34 1 2.8522 -3.1289 -2.4337
35 1 4.0640 -2.7465 -1.1874
36 1 4.4931 -5.7344 -3.2906
37 1 4.7422 -4.1175 -2.5813
38 1 6.4719 -4.9544 -1.0929
39 1 6.8514 -5.5720 -2.7203
40 1 9.5439 -6.2400 -2.4457
41 1 5.3328 -6.7658 0.5705
42 1 5.0833 -8.3803 -0.1440
43 1 2.9820 -6.9236 0.0032
44 1 3.3596 -7.5415 -1.6261
45 1 1.4335 -0.6961 -2.0800
46 1 3.1037 -0.5005 -1.4469
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000717073973.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:27
Heat of formation + Delta-G solvation = -81.707276 kcal
Electronic energy + Delta-G solvation = -25026.364659 eV
Core-core repulsion = 21529.616737 eV
Total energy + Delta-G solvation = -3496.747922 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.36576 -40.44255 -38.37865 -35.59095 -35.45831 -33.72206 -32.84324 -31.75979
-29.12255 -28.25033 -27.93400 -26.85662 -25.39349 -24.44367 -22.80919 -21.76390
-20.52094 -19.88261 -18.74202 -17.72895 -17.59627 -16.88417 -16.69859 -16.36997
-16.25444 -15.54693 -15.45201 -15.28063 -15.13749 -14.90888 -14.49835 -14.26641
-14.09488 -13.96815 -13.64964 -13.31929 -13.16816 -12.87403 -12.75164 -12.63163
-12.52763 -12.47498 -12.31801 -12.23417 -12.02664 -11.88944 -11.67501 -11.66153
-11.61544 -11.37835 -10.71779 -10.56400 -10.40700 -9.78765 -8.65553 -7.88634
-5.37082 1.50092 1.51304 1.58791 1.70871 2.09772 2.51974 2.90893
3.25499 3.40177 3.55240 3.60405 3.80989 3.86257 4.05830 4.17959
4.22876 4.24541 4.36176 4.37830 4.40806 4.57842 4.59049 4.61560
4.69673 4.74335 4.76733 4.80112 4.82223 4.85765 4.91016 5.02206
5.05150 5.06166 5.15740 5.19559 5.23387 5.32805 5.46131 5.55035
5.61008 5.67702 6.20345 6.35308 6.55461 7.10706 7.25623 7.77999
8.32343 9.16391
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.029989 B = 0.003234 C = 0.003068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.461545 B = 8655.721191 C = 9125.610585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.096 4.096
3 C -0.132 4.132
4 C 0.048 3.952
5 O -0.402 6.402
6 C 0.096 3.904
7 H 0.062 0.938
8 C -0.135 4.135
9 C 0.506 3.494
10 O -0.583 6.583
11 N -0.607 5.607
12 C 0.096 3.904
13 C 0.162 3.838
14 N -0.609 5.609
15 C -0.269 4.269
16 H 0.068 0.932
17 C -0.045 4.045
18 N -0.932 5.932
19 Si 0.971 3.029
20 H -0.274 1.274
21 H -0.293 1.293
22 H -0.280 1.280
23 C 0.133 3.867
24 C 0.106 3.894
25 C -0.134 4.134
26 H 0.076 0.924
27 H 0.064 0.936
28 H 0.043 0.957
29 H 0.064 0.936
30 H 0.057 0.943
31 H 0.073 0.927
32 H 0.069 0.931
33 H 0.062 0.938
34 H 0.138 0.862
35 H 0.105 0.895
36 H 0.072 0.928
37 H 0.110 0.890
38 H -0.004 1.004
39 H 0.077 0.923
40 H 0.253 0.747
41 H 0.003 0.997
42 H 0.071 0.929
43 H 0.080 0.920
44 H 0.071 0.929
45 H 0.106 0.894
46 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.474 15.644 -1.934 21.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.097 4.097
3 C -0.189 4.189
4 C -0.029 4.029
5 O -0.322 6.322
6 C 0.039 3.961
7 H 0.080 0.920
8 C -0.174 4.174
9 C 0.296 3.704
10 O -0.463 6.463
11 N -0.340 5.340
12 C -0.028 4.028
13 C 0.035 3.965
14 N -0.332 5.332
15 C -0.399 4.399
16 H 0.086 0.914
17 C -0.241 4.241
18 N -0.578 5.578
19 Si 0.799 3.201
20 H -0.200 1.200
21 H -0.219 1.219
22 H -0.205 1.205
23 C 0.006 3.994
24 C -0.018 4.018
25 C -0.172 4.172
26 H 0.095 0.905
27 H 0.083 0.917
28 H 0.062 0.938
29 H 0.083 0.917
30 H 0.076 0.924
31 H 0.092 0.908
32 H 0.087 0.913
33 H 0.080 0.920
34 H 0.156 0.844
35 H 0.123 0.877
36 H 0.091 0.909
37 H 0.128 0.872
38 H 0.014 0.986
39 H 0.095 0.905
40 H 0.062 0.938
41 H 0.021 0.979
42 H 0.089 0.911
43 H 0.098 0.902
44 H 0.089 0.911
45 H 0.124 0.876
46 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -14.637 15.385 -1.396 21.282
hybrid contribution 0.905 -0.797 -0.079 1.209
sum -13.732 14.588 -1.475 20.089
Atomic orbital electron populations
1.21825 0.92777 1.01647 1.03164 1.22116 0.96966 0.96824 0.93756
1.21733 1.00911 0.93161 1.03090 1.23434 0.99869 0.82553 0.97007
1.88543 1.85699 1.31652 1.26261 1.22827 0.96610 0.95685 0.80995
0.92035 1.21979 1.02542 0.90009 1.02909 1.21235 0.79587 0.88088
0.81460 1.90635 1.39338 1.83256 1.33094 1.48191 1.36917 1.09415
1.39438 1.22571 0.88720 1.01991 0.89486 1.21124 0.93742 0.84152
0.97455 1.44262 1.40713 1.06869 1.41402 1.19489 0.95389 0.90019
1.34978 0.91433 1.25807 0.96614 0.99081 1.02582 1.70166 1.16743
1.24431 1.46443 0.85299 0.77262 0.78345 0.79230 1.20024 1.21940
1.20548 1.21347 0.88944 0.98989 0.90098 1.21952 0.97843 0.82533
0.99485 1.23533 1.03494 0.91618 0.98522 0.90549 0.91653 0.93758
0.91726 0.92356 0.90785 0.91253 0.91955 0.84431 0.87704 0.90945
0.87219 0.98593 0.90472 0.93826 0.97891 0.91059 0.90154 0.91075
0.87558 0.89137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.91 8.44 71.98 0.61 -1.30 16
2 C -0.10 -1.51 0.94 -50.92 -0.05 -1.56 16
3 C -0.13 -1.52 8.51 71.99 0.61 -0.90 16
4 C 0.05 1.07 6.99 72.45 0.51 1.57 16
5 O -0.40 -12.51 10.41 -137.62 -1.43 -13.95 16
6 C 0.10 2.38 2.63 31.46 0.08 2.46 16
7 H 0.06 1.66 7.65 -2.39 -0.02 1.64 16
8 C -0.14 -3.39 3.80 29.85 0.11 -3.27 16
9 C 0.51 17.90 7.60 87.66 0.67 18.57 16
10 O -0.58 -24.79 14.94 8.33 0.12 -24.67 16
11 N -0.61 -22.10 2.94 -817.05 -2.40 -24.50 16
12 C 0.10 3.29 6.53 86.56 0.57 3.86 16
13 C 0.16 7.44 5.54 86.56 0.48 7.92 16
14 N -0.61 -30.51 2.97 -697.26 -2.07 -32.58 16
15 C -0.27 -14.51 9.57 84.03 0.80 -13.71 16
16 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16
17 C -0.04 -2.44 4.90 84.86 0.42 -2.02 16
18 N -0.93 -53.39 11.20 21.65 0.24 -53.14 16
19 Si 0.97 43.46 29.59 68.60 2.03 45.49 16
20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16
21 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16
22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
23 C 0.13 5.85 6.67 86.43 0.58 6.43 16
24 C 0.11 4.06 6.59 86.43 0.57 4.63 16
25 C -0.13 -2.13 5.57 32.24 0.18 -1.95 16
26 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16
27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
28 H 0.04 0.76 7.56 -2.39 -0.02 0.75 16
29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16
31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
32 H 0.07 1.46 7.80 -2.38 -0.02 1.44 16
33 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16
34 H 0.14 2.43 7.90 -2.39 -0.02 2.41 16
35 H 0.10 2.58 7.73 -2.39 -0.02 2.56 16
36 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16
37 H 0.11 2.90 5.91 -2.38 -0.01 2.88 16
38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16
39 H 0.08 3.90 5.98 -2.38 -0.01 3.89 16
40 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16
41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16
42 H 0.07 2.98 7.93 -2.39 -0.02 2.97 16
43 H 0.08 3.09 6.99 -2.39 -0.02 3.07 16
44 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16
45 H 0.11 1.22 8.03 -2.39 -0.02 1.21 16
46 H 0.09 1.31 7.97 -2.38 -0.02 1.29 16
Total: -1.00 -70.78 356.42 3.57 -67.21
By element:
Atomic # 1 Polarization: 14.47 SS G_CDS: 0.94 Total: 15.41 kcal
Atomic # 6 Polarization: 14.59 SS G_CDS: 6.13 Total: 20.72 kcal
Atomic # 7 Polarization: -106.00 SS G_CDS: -4.23 Total: -110.23 kcal
Atomic # 8 Polarization: -37.30 SS G_CDS: -1.31 Total: -38.61 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal
Total: -70.78 3.57 -67.21 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000717073973.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.493 kcal
(2) G-P(sol) polarization free energy of solvation -70.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.214 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds