Wall clock time and date at job start Tue Mar 31 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46500 * 109.45413 * 181.24177 * 12 11 10 14 14 C 1.34778 * 119.99805 * 84.79314 * 13 12 11 15 15 O 1.21276 * 120.00040 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99732 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.46856 * 179.97438 * 16 14 13 18 18 O 1.42903 * 110.01617 * 64.30207 * 17 16 14 19 19 C 1.54265 * 110.03550 * 302.91235 * 17 16 14 20 20 C 1.54968 * 104.15815 * 217.13854 * 19 17 16 21 21 C 1.54889 * 102.78059 * 37.88318 * 20 19 17 22 22 C 1.53879 * 110.03157 * 185.68991 * 17 16 14 23 23 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 24 24 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 25 25 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 27 27 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 28 28 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 29 29 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 30 30 H 1.08992 * 109.34132 * 301.13957 * 12 11 10 31 31 H 0.96998 * 119.99894 * 264.79019 * 13 12 11 32 32 H 1.08994 * 109.47626 * 299.99761 * 16 14 13 33 33 H 1.08999 * 109.47046 * 60.00444 * 16 14 13 34 34 H 0.96704 * 113.99972 * 300.69848 * 18 17 16 35 35 H 1.09000 * 110.48065 * 335.78049 * 19 17 16 36 36 H 1.08996 * 110.48969 * 98.42432 * 19 17 16 37 37 H 1.09004 * 110.71684 * 279.56543 * 20 19 17 38 38 H 1.09000 * 110.76133 * 156.22371 * 20 19 17 39 39 H 1.08993 * 110.48525 * 203.40698 * 21 20 19 40 40 H 1.08998 * 110.48587 * 80.76419 * 21 20 19 41 41 H 1.09000 * 110.03170 * 238.56983 * 22 17 16 42 42 H 1.08996 * 110.03081 * 0.02562 * 22 17 16 43 43 H 1.09002 * 109.49883 * 178.75013 * 23 12 11 44 44 H 1.08993 * 109.49715 * 58.64866 * 23 12 11 45 45 H 1.09007 * 109.58325 * 246.20224 * 24 9 7 46 46 H 1.08996 * 109.58499 * 6.48109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0397 -5.6477 2.9306 14 6 -0.0052 -6.2697 3.5118 15 8 -1.1338 -6.0460 3.1284 16 6 0.2291 -7.2442 4.6372 17 6 -1.1124 -7.8037 5.1148 18 8 -1.7263 -8.5611 4.0700 19 6 -2.0417 -6.6511 5.5480 20 6 -2.8005 -7.2167 6.7751 21 6 -1.7108 -8.0454 7.4996 22 6 -0.9023 -8.6902 6.3549 23 6 2.0675 -4.6174 0.9647 24 6 1.8138 -3.6528 -0.1981 25 1 -0.4850 0.8400 -0.0004 26 1 0.0994 -1.3343 1.6687 27 1 -0.6774 -2.6381 0.7363 28 1 1.3429 -2.9692 3.0020 29 1 -0.3880 -3.3841 3.0518 30 1 -0.0282 -5.0407 1.2308 31 1 1.9424 -5.8269 3.2369 32 1 0.8593 -8.0610 4.2854 33 1 0.7239 -6.7332 5.4631 34 1 -1.8949 -8.0544 3.2638 35 1 -1.4571 -5.7758 5.8313 36 1 -2.7394 -6.4025 4.7483 37 1 -3.6247 -7.8556 6.4579 38 1 -3.1598 -6.4092 7.4130 39 1 -2.1676 -8.8133 8.1237 40 1 -1.0726 -7.3956 8.0984 41 1 -1.2695 -9.6978 6.1601 42 1 0.1553 -8.7214 6.6167 43 1 2.3042 -5.6063 0.5721 44 1 2.9024 -4.2537 1.5636 45 1 1.0401 -4.0604 -0.8488 46 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746234075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:38 Heat of formation + Delta-G solvation = -108.393124 kcal Electronic energy + Delta-G solvation = -24956.659283 eV Core-core repulsion = 21458.754175 eV Total energy + Delta-G solvation = -3497.905107 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45254 -39.79977 -38.59993 -36.03550 -35.64633 -33.98159 -32.29437 -31.62334 -30.83288 -29.66075 -27.32406 -26.20700 -23.93979 -23.65378 -21.90783 -21.48162 -21.01260 -20.59115 -18.86977 -17.99763 -17.62238 -17.07650 -16.71727 -16.53477 -16.22357 -15.89939 -15.54041 -15.37216 -14.89955 -14.64727 -14.42096 -14.35760 -14.06977 -13.68532 -13.57187 -13.20865 -13.03670 -12.91101 -12.66942 -12.55571 -12.35663 -12.15335 -12.07799 -12.02286 -11.97328 -11.85317 -11.61403 -11.51899 -11.45004 -11.37536 -10.82123 -10.66784 -10.59116 -9.97662 -8.72496 -7.88928 -5.35490 1.46624 1.48141 1.57982 1.66677 2.21472 2.50621 3.26698 3.27688 3.56683 3.63149 3.68005 3.83989 3.87131 4.05827 4.08678 4.26749 4.32880 4.37264 4.45977 4.54236 4.58550 4.65285 4.71980 4.79177 4.83384 4.86385 4.91955 5.01948 5.05480 5.06450 5.09296 5.12142 5.16944 5.21321 5.30367 5.41153 5.44751 5.48204 5.58465 5.62754 5.68346 6.37136 6.62352 6.74540 7.12028 7.33114 7.82996 8.35505 9.18052 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029322 B = 0.003127 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.685617 B = 8953.074731 C = 9377.570389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.183 3.817 11 C -0.128 4.128 12 C 0.162 3.838 13 N -0.711 5.711 14 C 0.507 3.493 15 O -0.580 6.580 16 C -0.159 4.159 17 C 0.139 3.861 18 O -0.576 6.576 19 C -0.141 4.141 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.110 4.110 23 C -0.121 4.121 24 C 0.140 3.860 25 H 0.249 0.751 26 H 0.053 0.947 27 H -0.013 1.013 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.415 0.585 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.380 0.620 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.010 0.990 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -18.005 14.734 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.169 4.169 12 C 0.057 3.943 13 N -0.361 5.361 14 C 0.295 3.705 15 O -0.460 6.460 16 C -0.199 4.199 17 C 0.098 3.902 18 O -0.386 6.386 19 C -0.179 4.179 20 C -0.165 4.165 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.161 4.161 24 C 0.015 3.985 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.005 0.995 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.251 0.749 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.028 0.972 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.678 -18.194 14.883 23.658 hybrid contribution 0.062 1.815 -0.869 2.014 sum 2.740 -16.379 14.014 21.729 Atomic orbital electron populations 1.70209 1.06922 1.25884 1.55431 1.25886 0.96001 1.01835 1.01228 0.85251 0.78123 0.79312 0.77598 1.21105 1.22173 1.19089 1.19560 0.93014 0.85828 1.40893 0.90911 1.44350 1.35722 1.02672 1.50598 1.20452 0.87744 0.97333 0.88856 1.22284 1.00217 0.95954 0.98399 1.20619 0.98355 0.87653 0.87667 1.46080 1.10351 1.43544 1.36174 1.21286 0.84497 0.80993 0.83750 1.90660 1.24133 1.65983 1.65245 1.22581 1.00656 0.99089 0.97555 1.21760 0.89549 0.90795 0.88056 1.86398 1.82867 1.42160 1.27126 1.22989 0.98927 0.97695 0.98270 1.22538 0.98138 0.99519 0.96324 1.22370 0.96930 0.99359 0.96957 1.22209 1.02220 0.98826 0.91509 1.22122 0.96346 1.00271 0.97346 1.21046 0.97783 0.85683 0.94029 0.94181 0.92832 0.99481 0.92154 0.93575 0.92527 0.74863 0.85978 0.85356 0.76930 0.91840 0.92893 0.92289 0.91093 0.90319 0.90071 0.90998 0.88275 0.89100 0.90683 0.97218 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 11.20 21.65 0.24 -56.48 16 2 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 3 Si 0.97 44.75 29.59 68.60 2.03 46.78 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.26 -14.34 9.58 84.03 0.81 -13.54 16 8 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 9 N -0.61 -30.58 3.00 -699.10 -2.09 -32.67 16 10 C 0.18 9.18 5.30 86.36 0.46 9.64 16 11 C -0.13 -5.02 5.66 30.68 0.17 -4.85 16 12 C 0.16 5.23 2.41 45.03 0.11 5.34 16 13 N -0.71 -16.62 5.08 -442.36 -2.25 -18.86 16 14 C 0.51 12.55 7.26 87.66 0.64 13.19 16 15 O -0.58 -19.29 12.17 11.07 0.13 -19.16 16 16 C -0.16 -2.59 4.63 29.85 0.14 -2.45 16 17 C 0.14 2.80 0.98 -10.07 -0.01 2.79 16 18 O -0.58 -14.71 12.89 -134.89 -1.74 -16.45 16 19 C -0.14 -3.26 4.65 31.70 0.15 -3.11 16 20 C -0.13 -2.37 6.91 31.91 0.22 -2.15 16 21 C -0.12 -1.62 6.83 31.67 0.22 -1.40 16 22 C -0.11 -1.63 6.27 31.32 0.20 -1.43 16 23 C -0.12 -3.61 5.55 30.67 0.17 -3.44 16 24 C 0.14 5.60 6.52 86.36 0.56 6.16 16 25 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.05 3.04 6.06 -2.39 -0.01 3.03 16 27 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 31 H 0.41 6.66 8.60 -92.71 -0.80 5.86 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.38 10.31 6.96 -74.05 -0.52 9.79 16 35 H 0.06 1.47 7.78 -2.39 -0.02 1.45 16 36 H 0.05 1.55 7.18 -2.39 -0.02 1.53 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.17 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.18 7.95 -2.39 -0.02 1.17 16 42 H 0.10 0.95 7.67 -2.39 -0.02 0.93 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 Total: -1.00 -70.19 354.32 0.22 -69.97 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.34 Total: 24.77 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.24 Total: 2.11 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.10 Total: -108.02 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.60 Total: -35.61 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.19 0.22 -69.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746234075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.425 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds