Wall clock time and date at job start Tue Mar 31 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00316 * 2 1 4 4 H 1.48496 * 109.47373 * 239.99588 * 3 2 1 5 5 H 1.48507 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47122 * 119.99416 * 3 2 1 7 7 C 1.37878 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99792 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00014 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47310 * 299.99256 * 9 7 2 11 11 O 1.42900 * 109.47434 * 59.99852 * 9 7 2 12 12 C 1.52999 * 109.47045 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.47330 * 179.97438 * 12 9 7 14 14 C 1.46847 * 111.00198 * 293.95333 * 13 12 9 15 15 C 1.53037 * 109.52522 * 174.15766 * 14 13 12 16 16 C 1.53107 * 109.27741 * 59.18309 * 15 14 13 17 17 C 1.53121 * 109.16310 * 302.34260 * 16 15 14 18 18 H 1.08999 * 109.50058 * 297.67686 * 17 16 15 19 19 C 1.50694 * 109.50721 * 177.59623 * 17 16 15 20 20 O 1.21283 * 120.00363 * 240.07907 * 19 17 16 21 21 N 1.34784 * 119.99988 * 60.08026 * 19 17 16 22 22 C 1.46493 * 119.99864 * 179.72721 * 21 19 17 23 23 C 1.53001 * 109.47084 * 180.02562 * 22 21 19 24 24 C 1.52998 * 117.49650 * 243.62172 * 23 22 21 25 25 C 1.52995 * 117.50059 * 174.99811 * 23 22 21 26 26 C 1.46848 * 111.00100 * 169.70458 * 13 12 9 27 27 H 0.97004 * 120.00306 * 0.02562 * 1 2 3 28 28 H 0.96692 * 114.00250 * 59.99455 * 11 9 7 29 29 H 1.09005 * 109.47596 * 60.00106 * 12 9 7 30 30 H 1.08999 * 109.47688 * 299.99964 * 12 9 7 31 31 H 1.09004 * 109.45990 * 54.14236 * 14 13 12 32 32 H 1.08999 * 109.45251 * 294.17134 * 14 13 12 33 33 H 1.08995 * 109.50172 * 299.23780 * 15 14 13 34 34 H 1.09002 * 109.53180 * 179.14099 * 15 14 13 35 35 H 1.09006 * 109.52566 * 182.43996 * 16 15 14 36 36 H 1.08998 * 109.57953 * 62.27914 * 16 15 14 37 37 H 0.97000 * 119.99339 * 0.02562 * 21 19 17 38 38 H 1.09007 * 109.47196 * 299.99538 * 22 21 19 39 39 H 1.09006 * 109.47678 * 59.99732 * 22 21 19 40 40 H 1.09000 * 115.55299 * 29.32287 * 23 22 21 41 41 H 1.09003 * 117.50441 * 359.97438 * 24 23 22 42 42 H 1.08997 * 117.50181 * 145.01905 * 24 23 22 43 43 H 1.09004 * 117.50332 * 214.97326 * 25 23 22 44 44 H 1.09004 * 117.50271 * 359.97438 * 25 23 22 45 45 H 1.08996 * 109.43011 * 65.80199 * 26 13 12 46 46 H 1.09004 * 109.49391 * 305.83949 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5568 0.8904 11 8 0.4297 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5106 -4.9343 0.0012 14 6 0.7659 -5.1114 1.2543 15 6 -0.0988 -6.3707 1.1618 16 6 0.8000 -7.5833 0.9047 17 6 1.6002 -7.3524 -0.3801 18 1 0.9160 -7.2624 -1.2238 19 6 2.5309 -8.5153 -0.6091 20 8 3.7288 -8.3324 -0.6600 21 7 2.0322 -9.7586 -0.7573 22 6 2.9366 -10.8882 -0.9858 23 6 2.1208 -12.1757 -1.1193 24 6 2.3353 -13.2606 -0.0620 25 6 2.8762 -13.4564 -1.4797 26 6 2.4156 -6.0645 -0.2438 27 1 -0.4851 0.8400 -0.0004 28 1 0.9221 -2.5299 -1.9975 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 0.1276 -4.2441 1.4231 32 1 1.4675 -5.2126 2.0823 33 1 -0.8098 -6.2645 0.3425 34 1 -0.6400 -6.5107 2.0975 35 1 0.1845 -8.4762 0.7950 36 1 1.4853 -7.7140 1.7421 37 1 1.0741 -9.9047 -0.7170 38 1 3.5028 -10.7207 -1.9021 39 1 3.6244 -10.9789 -0.1451 40 1 1.1145 -12.0553 -1.5202 41 1 3.0578 -13.0573 0.7285 42 1 1.4699 -13.8540 0.2329 43 1 2.3667 -14.1788 -2.1174 44 1 3.9543 -13.3818 -1.6222 45 1 3.1098 -6.1608 0.5909 46 1 2.9751 -5.8899 -1.1629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:13 Heat of formation + Delta-G solvation = -71.064777 kcal Electronic energy + Delta-G solvation = -24167.561967 eV Core-core repulsion = 20671.275538 eV Total energy + Delta-G solvation = -3496.286429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25969 -38.42187 -37.64960 -35.55070 -34.37411 -32.85857 -32.01486 -30.89817 -28.31303 -27.30352 -25.13540 -23.74174 -22.83295 -22.63311 -21.37022 -20.99188 -19.80187 -19.40520 -17.32545 -16.86837 -16.62145 -15.73178 -15.17956 -14.94460 -14.71591 -14.58492 -14.41768 -14.27264 -14.00692 -13.81526 -13.36685 -13.28460 -12.90206 -12.59370 -12.32207 -12.22264 -11.98023 -11.83574 -11.32345 -11.14014 -10.94452 -10.88698 -10.82837 -10.78468 -10.63404 -10.59451 -10.41660 -10.20517 -9.97645 -9.66833 -9.22423 -8.91489 -8.51751 -8.05367 -7.58134 -5.96463 -4.14367 2.59774 2.91964 3.31864 3.36633 3.36837 3.39096 4.20929 4.32210 4.44435 4.46917 4.55219 4.68886 4.78094 4.86241 4.96409 5.17920 5.21189 5.31187 5.34672 5.37662 5.43121 5.44913 5.56352 5.66120 5.68935 5.74106 5.85716 5.91888 5.97694 6.07747 6.16566 6.22020 6.28987 6.35112 6.48498 6.51143 6.65395 6.88141 7.32911 7.60762 7.67509 7.83232 7.93320 8.14344 8.25512 8.89469 9.50982 9.67483 11.07602 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039876 B = 0.002588 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.016851 B =10817.004038 C =11152.061978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.055 0.945 11 O -0.554 6.554 12 C 0.032 3.968 13 N -0.527 5.527 14 C 0.052 3.948 15 C -0.113 4.113 16 C -0.107 4.107 17 C -0.102 4.102 18 H 0.107 0.893 19 C 0.521 3.479 20 O -0.540 6.540 21 N -0.731 5.731 22 C 0.150 3.850 23 C -0.170 4.170 24 C -0.177 4.177 25 C -0.171 4.171 26 C 0.076 3.924 27 H 0.260 0.740 28 H 0.342 0.658 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.401 0.599 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.032 0.968 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 -24.797 -0.223 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.072 0.928 11 O -0.356 6.356 12 C -0.095 4.095 13 N -0.251 5.251 14 C -0.076 4.076 15 C -0.151 4.151 16 C -0.145 4.145 17 C -0.124 4.124 18 H 0.125 0.875 19 C 0.307 3.693 20 O -0.416 6.416 21 N -0.384 5.384 22 C 0.026 3.974 23 C -0.189 4.189 24 C -0.214 4.214 25 C -0.209 4.209 26 C -0.052 4.052 27 H 0.070 0.930 28 H 0.186 0.814 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.050 0.950 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.741 -24.579 -0.169 24.591 hybrid contribution 1.170 0.798 0.308 1.449 sum 1.911 -23.781 0.139 23.858 Atomic orbital electron populations 1.70067 1.05877 1.26442 1.47092 1.25014 0.94689 0.99022 0.93903 0.86741 0.79715 0.83246 0.78674 1.20151 1.21229 1.20240 1.21636 0.93142 0.91667 1.54809 0.92804 1.19314 0.87769 0.88458 0.86470 0.92788 1.86543 1.37746 1.96304 1.14988 1.23067 0.97244 0.89511 0.99669 1.61893 1.27245 1.01739 1.34249 1.22120 0.96818 0.98512 0.90107 1.21568 0.97900 0.93577 1.02070 1.21554 0.98171 0.98799 0.96015 1.21349 0.97398 0.92884 1.00731 0.87536 1.20833 0.89381 0.83837 0.75248 1.90700 1.16229 1.84852 1.49809 1.46005 1.10609 1.06992 1.74816 1.20852 0.91709 0.83119 1.01697 1.22471 1.01002 0.90120 1.05276 1.23097 1.03562 1.02137 0.92618 1.22959 1.00613 0.98704 0.98612 1.21772 0.93075 0.88998 1.01392 0.92992 0.81449 0.95565 0.91784 0.89437 0.95826 0.90640 0.91542 0.91839 0.92000 0.76433 0.91154 0.91434 0.87112 0.88498 0.88578 0.88408 0.88408 0.94967 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 12.84 55.43 0.71 -24.79 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.57 -15.92 8.76 -34.44 -0.30 -16.22 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.24 6.06 2.71 -27.88 -0.08 5.98 16 10 H 0.05 1.50 6.44 -51.93 -0.33 1.16 16 11 O -0.55 -14.48 12.60 -35.23 -0.44 -14.92 16 12 C 0.03 0.69 4.56 -3.82 -0.02 0.67 16 13 N -0.53 -9.70 4.52 -234.67 -1.06 -10.77 16 14 C 0.05 0.89 5.29 -3.83 -0.02 0.87 16 15 C -0.11 -1.47 6.09 -26.66 -0.16 -1.63 16 16 C -0.11 -1.20 5.16 -26.61 -0.14 -1.34 16 17 C -0.10 -1.31 2.69 -91.69 -0.25 -1.56 16 18 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.52 6.77 7.16 -10.98 -0.08 6.69 16 20 O -0.54 -9.17 15.98 5.56 0.09 -9.09 16 21 N -0.73 -6.82 5.46 -60.29 -0.33 -7.15 16 22 C 0.15 1.30 5.95 -4.04 -0.02 1.27 16 23 C -0.17 -1.05 5.85 -90.62 -0.53 -1.58 16 24 C -0.18 -1.00 10.18 -26.73 -0.27 -1.27 16 25 C -0.17 -0.94 10.25 -26.73 -0.27 -1.22 16 26 C 0.08 1.25 4.04 -3.83 -0.02 1.24 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.34 8.12 9.04 45.56 0.41 8.53 16 29 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 31 H 0.09 1.69 6.22 -51.93 -0.32 1.36 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 2.71 7.87 -40.82 -0.32 2.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 40 H 0.11 0.59 8.04 -51.93 -0.42 0.17 16 41 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 46 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -32.70 369.01 -9.97 -42.67 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.22 Total: 8.06 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.25 Total: -5.94 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.68 Total: -42.71 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.35 Total: -24.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.70 -9.97 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.396 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds