Wall clock time and date at job start Tue Mar 31 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00316 * 2 1 4 4 H 1.48496 * 109.47373 * 239.99588 * 3 2 1 5 5 H 1.48507 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47122 * 119.99416 * 3 2 1 7 7 C 1.37878 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99792 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00014 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47310 * 299.99256 * 9 7 2 11 11 O 1.42900 * 109.47434 * 59.99852 * 9 7 2 12 12 C 1.52999 * 109.47045 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.47330 * 179.97438 * 12 9 7 14 14 C 1.46847 * 111.00198 * 293.95333 * 13 12 9 15 15 C 1.53037 * 109.52522 * 174.15766 * 14 13 12 16 16 C 1.53107 * 109.27741 * 59.18309 * 15 14 13 17 17 C 1.53121 * 109.16310 * 302.34260 * 16 15 14 18 18 H 1.08999 * 109.50058 * 297.67686 * 17 16 15 19 19 C 1.50694 * 109.50721 * 177.59623 * 17 16 15 20 20 O 1.21283 * 120.00363 * 240.07907 * 19 17 16 21 21 N 1.34784 * 119.99988 * 60.08026 * 19 17 16 22 22 C 1.46493 * 119.99864 * 179.72721 * 21 19 17 23 23 C 1.53001 * 109.47084 * 180.02562 * 22 21 19 24 24 C 1.52998 * 117.49650 * 243.62172 * 23 22 21 25 25 C 1.52995 * 117.50059 * 174.99811 * 23 22 21 26 26 C 1.46848 * 111.00100 * 169.70458 * 13 12 9 27 27 H 0.97004 * 120.00306 * 0.02562 * 1 2 3 28 28 H 0.96692 * 114.00250 * 59.99455 * 11 9 7 29 29 H 1.09005 * 109.47596 * 60.00106 * 12 9 7 30 30 H 1.08999 * 109.47688 * 299.99964 * 12 9 7 31 31 H 1.09004 * 109.45990 * 54.14236 * 14 13 12 32 32 H 1.08999 * 109.45251 * 294.17134 * 14 13 12 33 33 H 1.08995 * 109.50172 * 299.23780 * 15 14 13 34 34 H 1.09002 * 109.53180 * 179.14099 * 15 14 13 35 35 H 1.09006 * 109.52566 * 182.43996 * 16 15 14 36 36 H 1.08998 * 109.57953 * 62.27914 * 16 15 14 37 37 H 0.97000 * 119.99339 * 0.02562 * 21 19 17 38 38 H 1.09007 * 109.47196 * 299.99538 * 22 21 19 39 39 H 1.09006 * 109.47678 * 59.99732 * 22 21 19 40 40 H 1.09000 * 115.55299 * 29.32287 * 23 22 21 41 41 H 1.09003 * 117.50441 * 359.97438 * 24 23 22 42 42 H 1.08997 * 117.50181 * 145.01905 * 24 23 22 43 43 H 1.09004 * 117.50332 * 214.97326 * 25 23 22 44 44 H 1.09004 * 117.50271 * 359.97438 * 25 23 22 45 45 H 1.08996 * 109.43011 * 65.80199 * 26 13 12 46 46 H 1.09004 * 109.49391 * 305.83949 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5568 0.8904 11 8 0.4297 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5106 -4.9343 0.0012 14 6 0.7659 -5.1114 1.2543 15 6 -0.0988 -6.3707 1.1618 16 6 0.8000 -7.5833 0.9047 17 6 1.6002 -7.3524 -0.3801 18 1 0.9160 -7.2624 -1.2238 19 6 2.5309 -8.5153 -0.6091 20 8 3.7288 -8.3324 -0.6600 21 7 2.0322 -9.7586 -0.7573 22 6 2.9366 -10.8882 -0.9858 23 6 2.1208 -12.1757 -1.1193 24 6 2.3353 -13.2606 -0.0620 25 6 2.8762 -13.4564 -1.4797 26 6 2.4156 -6.0645 -0.2438 27 1 -0.4851 0.8400 -0.0004 28 1 0.9221 -2.5299 -1.9975 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 0.1276 -4.2441 1.4231 32 1 1.4675 -5.2126 2.0823 33 1 -0.8098 -6.2645 0.3425 34 1 -0.6400 -6.5107 2.0975 35 1 0.1845 -8.4762 0.7950 36 1 1.4853 -7.7140 1.7421 37 1 1.0741 -9.9047 -0.7170 38 1 3.5028 -10.7207 -1.9021 39 1 3.6244 -10.9789 -0.1451 40 1 1.1145 -12.0553 -1.5202 41 1 3.0578 -13.0573 0.7285 42 1 1.4699 -13.8540 0.2329 43 1 2.3667 -14.1788 -2.1174 44 1 3.9543 -13.3818 -1.6222 45 1 3.1098 -6.1608 0.5909 46 1 2.9751 -5.8899 -1.1629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809572329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:12 Heat of formation + Delta-G solvation = -95.805197 kcal Electronic energy + Delta-G solvation = -24168.634792 eV Core-core repulsion = 20671.275538 eV Total energy + Delta-G solvation = -3497.359254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33137 -39.60775 -38.40245 -37.38193 -35.30165 -34.32848 -34.09290 -32.08609 -30.12735 -28.20465 -26.90764 -25.03990 -24.01818 -23.24151 -22.48920 -21.98860 -21.18855 -20.50191 -19.10087 -18.06888 -17.50796 -16.81193 -16.66559 -16.33851 -16.22591 -16.06607 -15.84018 -15.34952 -15.14368 -14.88122 -14.71082 -14.52543 -14.30420 -13.96890 -13.74680 -13.48440 -13.14358 -12.82984 -12.76079 -12.54269 -12.39198 -12.35854 -12.34319 -12.04995 -11.86220 -11.71324 -11.43315 -11.33837 -11.15251 -10.98825 -10.71921 -10.64062 -10.08743 -10.07053 -9.14992 -8.12607 -6.38373 1.40501 1.42181 1.50315 1.57683 2.06510 2.39074 2.86941 3.06796 3.13580 3.60243 3.70071 3.76820 3.90773 3.99341 4.08137 4.17478 4.20376 4.27580 4.31292 4.32564 4.46069 4.58939 4.59948 4.65895 4.70192 4.75561 4.81781 4.83228 4.96320 4.96834 5.03232 5.04263 5.07835 5.18320 5.19813 5.26710 5.42315 5.47016 5.61156 5.76108 6.01091 6.19782 6.28420 6.51663 6.74083 7.21321 7.35305 7.62987 8.91498 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039876 B = 0.002588 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.016851 B =10817.004038 C =11152.061978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.592 4.592 8 H 0.055 0.945 9 C 0.241 3.759 10 H 0.025 0.975 11 O -0.567 6.567 12 C 0.048 3.952 13 N -0.531 5.531 14 C 0.049 3.951 15 C -0.105 4.105 16 C -0.099 4.099 17 C -0.094 4.094 18 H 0.119 0.881 19 C 0.523 3.477 20 O -0.586 6.586 21 N -0.711 5.711 22 C 0.150 3.850 23 C -0.171 4.171 24 C -0.176 4.176 25 C -0.171 4.171 26 C 0.080 3.920 27 H 0.262 0.738 28 H 0.352 0.648 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.418 0.582 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.018 0.982 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -26.641 -0.352 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.630 4.630 8 H 0.073 0.927 9 C 0.183 3.817 10 H 0.043 0.957 11 O -0.370 6.370 12 C -0.081 4.081 13 N -0.255 5.255 14 C -0.079 4.079 15 C -0.143 4.143 16 C -0.137 4.137 17 C -0.116 4.116 18 H 0.137 0.863 19 C 0.309 3.691 20 O -0.466 6.466 21 N -0.363 5.363 22 C 0.026 3.974 23 C -0.189 4.189 24 C -0.212 4.212 25 C -0.209 4.209 26 C -0.049 4.049 27 H 0.071 0.929 28 H 0.196 0.804 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.037 0.963 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.174 -26.470 -0.300 26.472 hybrid contribution 1.335 1.321 0.347 1.910 sum 1.509 -25.149 0.047 25.194 Atomic orbital electron populations 1.70200 1.07509 1.27420 1.48171 1.25864 0.95530 1.02752 0.93363 0.85626 0.78398 0.78598 0.79015 1.19310 1.20759 1.19516 1.22016 0.93412 0.92979 1.54590 0.92697 1.19132 0.87671 0.89584 0.85265 0.95726 1.86485 1.38474 1.96419 1.15608 1.22693 0.96064 0.90003 0.99299 1.61858 1.27219 1.01172 1.35223 1.22179 0.96729 0.99639 0.89375 1.21532 0.97416 0.91989 1.03350 1.21549 0.97974 0.99494 0.94679 1.21262 0.97045 0.90940 1.02345 0.86324 1.20786 0.88556 0.84813 0.74898 1.90690 1.18090 1.85599 1.52262 1.45842 1.11663 1.05944 1.72890 1.20870 0.91895 0.83958 1.00669 1.22402 1.01343 0.88939 1.06216 1.23157 1.03893 1.01730 0.92470 1.23051 1.00602 0.98372 0.98854 1.21726 0.93071 0.89982 1.00107 0.92925 0.80417 0.96307 0.91747 0.92557 0.95954 0.90743 0.89195 0.87668 0.92328 0.74486 0.92325 0.92533 0.85588 0.89026 0.87315 0.87153 0.88749 0.96332 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.10 12.84 21.45 0.28 -53.83 16 2 C 0.03 1.57 5.40 84.66 0.46 2.03 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.59 -33.40 8.76 25.60 0.22 -33.18 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.24 12.71 2.71 29.85 0.08 12.79 16 10 H 0.03 1.45 6.44 -2.39 -0.02 1.43 16 11 O -0.57 -30.33 12.60 -148.98 -1.88 -32.21 16 12 C 0.05 2.09 4.56 86.30 0.39 2.48 16 13 N -0.53 -19.83 4.52 -896.35 -4.05 -23.88 16 14 C 0.05 1.66 5.29 86.33 0.46 2.12 16 15 C -0.11 -2.52 6.09 30.64 0.19 -2.33 16 16 C -0.10 -1.93 5.16 30.67 0.16 -1.77 16 17 C -0.09 -2.27 2.69 -11.49 -0.03 -2.30 16 18 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 19 C 0.52 12.90 7.16 87.65 0.63 13.53 16 20 O -0.59 -19.97 15.98 -3.04 -0.05 -20.02 16 21 N -0.71 -11.60 5.46 -463.05 -2.53 -14.13 16 22 C 0.15 2.37 5.95 86.38 0.51 2.89 16 23 C -0.17 -1.69 5.85 -10.80 -0.06 -1.75 16 24 C -0.18 -1.56 10.18 30.59 0.31 -1.25 16 25 C -0.17 -1.52 10.25 30.59 0.31 -1.21 16 26 C 0.08 2.62 4.04 86.33 0.35 2.97 16 27 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.35 17.00 9.04 -74.06 -0.67 16.33 16 29 H 0.02 0.84 8.12 -2.38 -0.02 0.82 16 30 H 0.06 2.78 7.98 -2.39 -0.02 2.76 16 31 H 0.06 2.27 6.22 -2.38 -0.01 2.25 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.24 7.65 -2.38 -0.02 1.22 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.42 4.09 7.87 -92.71 -0.73 3.36 16 38 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 1.04 7.88 -2.38 -0.02 1.02 16 40 H 0.13 0.90 8.04 -2.39 -0.02 0.88 16 41 H 0.09 0.92 8.03 -2.39 -0.02 0.90 16 42 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 46 H 0.06 2.22 7.99 -2.39 -0.02 2.20 16 Total: -1.00 -72.35 369.01 -2.65 -75.01 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.43 Total: 27.91 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 3.98 Total: -4.98 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -6.30 Total: -91.84 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -1.93 Total: -52.23 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.35 -2.65 -75.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.797 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds