Wall clock time and date at job start Tue Mar 31 2020 03:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 113.01068 * 2 1 4 4 C 1.53926 * 113.73361 * 228.36065 * 2 1 3 5 5 N 1.47965 * 86.18167 * 221.92385 * 4 2 1 6 6 C 1.46898 * 111.00023 * 137.57983 * 5 4 2 7 7 C 1.50705 * 109.47058 * 70.64624 * 6 5 4 8 8 O 1.21286 * 119.99932 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99866 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99528 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46830 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00207 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99858 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00400 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46992 * 60.00179 * 15 13 11 17 17 H 1.48499 * 109.47502 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47386 * 300.00539 * 15 13 11 19 19 C 1.47967 * 90.76019 * 24.68953 * 5 4 2 20 20 H 1.08997 * 113.85699 * 89.64265 * 19 5 4 21 21 C 1.52995 * 113.75569 * 220.99538 * 19 5 4 22 22 H 1.09004 * 110.32779 * 159.31383 * 21 19 5 23 23 C 1.54478 * 110.37213 * 281.55840 * 21 19 5 24 24 C 1.54510 * 104.06500 * 142.81344 * 23 21 19 25 25 C 1.54477 * 104.18108 * 359.93120 * 24 23 21 26 26 O 1.44415 * 110.37805 * 36.94163 * 21 19 5 27 27 H 1.08998 * 109.47535 * 288.36896 * 1 2 3 28 28 H 1.09008 * 109.46881 * 48.36600 * 1 2 3 29 29 H 1.08994 * 109.47262 * 168.36141 * 1 2 3 30 30 H 1.09000 * 109.47113 * 191.63513 * 3 2 1 31 31 H 1.09004 * 109.47093 * 311.63199 * 3 2 1 32 32 H 1.09002 * 109.47550 * 71.63284 * 3 2 1 33 33 H 1.09007 * 113.75904 * 336.23794 * 4 2 1 34 34 H 1.08997 * 113.76392 * 107.60614 * 4 2 1 35 35 H 1.09001 * 109.47082 * 190.63669 * 6 5 4 36 36 H 1.08991 * 109.47573 * 310.64409 * 6 5 4 37 37 H 0.96997 * 119.99863 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.46866 * 299.99802 * 10 9 7 39 39 H 1.08991 * 109.46971 * 60.00042 * 10 9 7 40 40 H 0.97003 * 119.99982 * 180.02562 * 14 13 11 41 41 H 1.09000 * 110.51268 * 24.16771 * 23 21 19 42 42 H 1.08999 * 110.51553 * 261.45690 * 23 21 19 43 43 H 1.09002 * 110.51305 * 118.64650 * 24 23 21 44 44 H 1.08994 * 110.51141 * 241.21979 * 24 23 21 45 45 H 1.09006 * 110.37498 * 94.92285 * 25 24 23 46 46 H 1.09000 * 110.37254 * 217.25804 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1281 1.4082 0.0000 4 6 2.1496 -0.9362 -1.0531 5 7 3.1155 -1.3198 0.0002 6 6 3.3458 -2.7706 0.0003 7 6 4.1331 -3.1543 -1.2262 8 8 4.4689 -2.3030 -2.0221 9 7 4.4641 -4.4434 -1.4384 10 6 5.2290 -4.8164 -2.6309 11 6 5.4654 -6.3048 -2.6308 12 1 5.0837 -6.9121 -1.8234 13 6 6.1681 -6.8913 -3.6619 14 7 6.6325 -6.1518 -4.6453 15 14 6.4618 -8.7360 -3.6614 16 1 5.1569 -9.4450 -3.6677 17 1 7.2359 -9.1144 -4.8709 18 1 7.2252 -9.1154 -2.4456 19 6 2.1495 -0.9362 1.0533 20 1 1.4897 -1.7467 1.3627 21 6 2.7853 -0.2002 2.2344 22 1 2.0295 0.3658 2.7790 23 6 3.4893 -1.2020 3.1763 24 6 4.7548 -0.4502 3.6458 25 6 4.6694 0.9172 2.9321 26 8 3.8375 0.6752 1.7739 27 1 -0.3634 0.3238 0.9753 28 1 -0.3633 0.6828 -0.7681 29 1 -0.3633 -1.0065 -0.2073 30 1 3.1966 1.3492 -0.2073 31 1 1.6417 2.0095 -0.7681 32 1 1.9721 1.8693 0.9753 33 1 1.4905 -1.7480 -1.3611 34 1 2.6026 -0.4121 -1.8946 35 1 3.9054 -3.0496 0.8931 36 1 2.3880 -3.2906 -0.0055 37 1 4.1959 -5.1241 -0.8016 38 1 4.6689 -4.5379 -3.5236 39 1 6.1867 -4.2960 -2.6258 40 1 7.1265 -6.5645 -5.3710 41 1 3.7621 -2.1080 2.6351 42 1 2.8500 -1.4414 4.0260 43 1 4.7411 -0.3179 4.7277 44 1 5.6531 -0.9857 3.3389 45 1 4.2051 1.6572 3.5841 46 1 5.6619 1.2486 2.6270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810028496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:38 Heat of formation + Delta-G solvation = -77.943696 kcal Electronic energy + Delta-G solvation = -25057.890026 eV Core-core repulsion = 21561.305305 eV Total energy + Delta-G solvation = -3496.584721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.01955 -40.23142 -39.23759 -36.13072 -34.40476 -34.07463 -32.81050 -30.99867 -30.13451 -28.38213 -28.12460 -26.25376 -25.03962 -23.60921 -22.63658 -21.75988 -21.28847 -19.32158 -18.85780 -17.70439 -17.50824 -17.20952 -16.83893 -16.51628 -16.27309 -16.11455 -15.40317 -15.39872 -14.94442 -14.66515 -14.48282 -14.22963 -13.99340 -13.83333 -13.80522 -13.25745 -13.02938 -12.94812 -12.85841 -12.71457 -12.61166 -12.48989 -12.44034 -12.24873 -11.97068 -11.74010 -11.53305 -11.45206 -11.29970 -10.88360 -10.80296 -10.67099 -10.42501 -9.84413 -9.57617 -8.30220 -6.47729 1.41679 1.46272 1.54561 1.78415 2.27469 2.47421 2.99126 3.04297 3.08275 3.43140 3.59493 3.83979 3.96477 3.99901 4.09853 4.19130 4.26975 4.29836 4.34385 4.40961 4.48175 4.50911 4.68586 4.76438 4.86522 4.90240 4.91801 4.94623 5.03518 5.08590 5.12407 5.19479 5.21616 5.23528 5.25964 5.29617 5.35140 5.43004 5.47369 5.68382 5.71483 5.83286 6.01522 6.27006 6.63264 6.93221 7.22146 7.51999 8.81958 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.003345 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.313348 B = 8367.697619 C = 9002.355683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.106 4.106 4 C 0.013 3.987 5 N -0.458 5.458 6 C 0.014 3.986 7 C 0.494 3.506 8 O -0.587 6.587 9 N -0.710 5.710 10 C 0.270 3.730 11 C -0.558 4.558 12 H 0.085 0.915 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.987 3.013 16 H -0.261 1.261 17 H -0.285 1.285 18 H -0.261 1.261 19 C 0.042 3.958 20 H 0.112 0.888 21 C 0.094 3.906 22 H 0.092 0.908 23 C -0.149 4.149 24 C -0.151 4.151 25 C 0.034 3.966 26 O -0.369 6.369 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.407 0.593 38 H -0.015 1.015 39 H -0.018 1.018 40 H 0.269 0.731 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.663 10.887 20.740 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.163 4.163 4 C -0.116 4.116 5 N -0.181 5.181 6 C -0.118 4.118 7 C 0.281 3.719 8 O -0.467 6.467 9 N -0.361 5.361 10 C 0.147 3.853 11 C -0.595 4.595 12 H 0.103 0.897 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.067 4.067 20 H 0.130 0.870 21 C 0.036 3.964 22 H 0.110 0.890 23 C -0.186 4.186 24 C -0.189 4.189 25 C -0.043 4.043 26 O -0.288 6.288 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.243 0.757 38 H 0.002 0.998 39 H 0.000 1.000 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.608 11.819 19.784 26.269 hybrid contribution 0.047 -1.622 -0.468 1.689 sum -12.561 10.197 19.316 25.197 Atomic orbital electron populations 1.21766 0.91917 1.02321 1.03072 1.22254 0.96123 0.95464 0.93704 1.21399 1.00186 0.93237 1.01485 1.23945 0.93311 0.98458 0.95909 1.68484 1.34028 1.11625 1.03948 1.22623 1.00511 0.92727 0.95896 1.21329 0.80301 0.82124 0.88121 1.90647 1.56359 1.50655 1.49055 1.46194 1.55640 1.08240 1.26074 1.18479 0.88988 0.95183 0.82696 1.21592 1.36757 0.92030 1.09143 0.89724 1.26106 0.94494 1.04704 0.94364 1.70148 1.36871 1.38509 1.11537 0.85181 0.78849 0.77138 0.77886 1.18498 1.21081 1.18592 1.23923 0.92541 0.97760 0.92470 0.87008 1.22825 0.90715 0.90240 0.92616 0.89024 1.22993 0.97103 0.98867 0.99675 1.22877 0.98310 0.96103 1.01561 1.23532 0.95773 0.96947 0.88022 1.89417 1.40317 1.67182 1.31881 0.90439 0.92103 0.92177 0.93434 0.93151 0.91313 0.91525 0.92599 0.86428 0.89012 0.75715 0.99753 0.99986 0.92237 0.91884 0.88388 0.88868 0.92367 0.90949 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.22 71.98 0.66 -1.34 16 2 C -0.07 -1.58 1.36 -51.54 -0.07 -1.65 16 3 C -0.11 -2.42 7.49 71.98 0.54 -1.88 16 4 C 0.01 0.37 5.84 86.40 0.50 0.88 16 5 N -0.46 -13.45 5.21 -886.26 -4.62 -18.06 16 6 C 0.01 0.39 5.17 85.56 0.44 0.84 16 7 C 0.49 20.96 7.64 87.66 0.67 21.63 16 8 O -0.59 -31.15 15.55 -3.05 -0.05 -31.20 16 9 N -0.71 -31.21 5.55 -466.77 -2.59 -33.80 16 10 C 0.27 15.35 5.43 85.63 0.46 15.81 16 11 C -0.56 -30.96 9.28 25.60 0.24 -30.73 16 12 H 0.08 4.21 7.60 -2.91 -0.02 4.18 16 13 C 0.00 0.16 5.46 84.65 0.46 0.62 16 14 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 15 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 17 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C 0.04 0.83 2.58 45.02 0.12 0.95 16 20 H 0.11 1.68 7.75 -2.39 -0.02 1.66 16 21 C 0.09 1.68 2.68 31.10 0.08 1.76 16 22 H 0.09 1.24 8.12 -2.38 -0.02 1.22 16 23 C -0.15 -2.29 6.63 31.61 0.21 -2.08 16 24 C -0.15 -2.40 7.08 31.61 0.22 -2.17 16 25 C 0.03 0.62 7.65 72.48 0.55 1.17 16 26 O -0.37 -8.88 7.71 -148.98 -1.15 -10.03 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 0.86 7.94 -2.39 -0.02 0.84 16 30 H 0.05 1.42 6.79 -2.39 -0.02 1.41 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.35 7.11 -2.39 -0.02 1.34 16 33 H 0.07 1.85 7.60 -2.38 -0.02 1.83 16 34 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 35 H 0.12 2.90 6.65 -2.39 -0.02 2.89 16 36 H 0.09 2.07 7.69 -2.39 -0.02 2.05 16 37 H 0.41 14.57 8.32 -92.71 -0.77 13.80 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.06 1.14 6.22 -2.39 -0.01 1.12 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -77.11 361.23 -0.81 -77.91 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.19 Total: 23.77 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.10 Total: 3.80 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -6.92 Total: -109.04 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.20 Total: -41.23 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.11 -0.81 -77.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810028496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.029 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds