Wall clock time and date at job start Tue Mar 31 2020 03:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47214 * 2 1 4 4 N 1.28515 * 124.44171 * 269.97166 * 3 2 1 5 5 C 1.31137 * 109.05610 * 179.73767 * 4 3 2 6 6 C 1.50703 * 127.11067 * 180.29852 * 5 4 3 7 7 C 1.40926 * 105.77501 * 0.43641 * 5 4 3 8 8 C 1.47800 * 127.23458 * 179.83865 * 7 5 4 9 9 O 1.21563 * 120.00056 * 5.34971 * 8 7 5 10 10 N 1.34773 * 119.99963 * 185.34938 * 8 7 5 11 11 C 1.46496 * 120.00055 * 5.15833 * 10 8 7 12 12 C 1.50701 * 109.47433 * 275.38980 * 11 10 8 13 13 H 1.08005 * 119.99439 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00558 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00452 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99607 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46957 * 90.00031 * 16 14 12 18 18 H 1.48502 * 109.47136 * 209.99463 * 16 14 12 19 19 H 1.48500 * 109.47462 * 330.00006 * 16 14 12 20 20 C 1.46494 * 120.00048 * 185.15925 * 10 8 7 21 21 C 1.53003 * 109.47280 * 269.99942 * 20 10 8 22 22 O 1.42903 * 109.46865 * 64.99982 * 21 20 10 23 23 C 1.42903 * 113.99925 * 180.02562 * 22 21 20 24 24 N 1.28585 * 124.44180 * 90.00840 * 3 2 1 25 25 H 1.09006 * 109.47070 * 300.00000 * 1 2 3 26 26 H 1.08994 * 109.47192 * 59.99841 * 1 2 3 27 27 H 1.09003 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47070 * 240.00000 * 2 1 3 29 29 H 1.09007 * 109.47397 * 120.00417 * 2 1 3 30 30 H 1.09005 * 109.46921 * 270.16730 * 6 5 4 31 31 H 1.09003 * 109.47266 * 30.16669 * 6 5 4 32 32 H 1.08997 * 109.47119 * 150.16628 * 6 5 4 33 33 H 1.09002 * 109.47076 * 35.38723 * 11 10 8 34 34 H 1.08999 * 109.47616 * 155.39020 * 11 10 8 35 35 H 0.96997 * 120.00208 * 180.02562 * 15 14 12 36 36 H 1.09006 * 109.47098 * 30.00031 * 20 10 8 37 37 H 1.09000 * 109.47188 * 150.00144 * 20 10 8 38 38 H 1.08995 * 109.47006 * 185.00047 * 21 20 10 39 39 H 1.08993 * 109.46794 * 304.99927 * 21 20 10 40 40 H 1.08995 * 109.47175 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46858 * 300.00446 * 23 22 21 42 42 H 1.08998 * 109.46612 * 59.99694 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0663 -1.0599 5 6 2.6770 3.2603 -0.7120 6 6 3.0681 4.3901 -1.6295 7 6 2.6859 3.2674 0.6973 8 6 3.0804 4.3825 1.5835 9 8 3.3544 5.4679 1.1096 10 7 3.1363 4.1959 2.9171 11 6 2.9168 2.8613 3.4799 12 6 1.4381 2.6229 3.6457 13 1 0.7323 3.3892 3.3607 14 6 0.9860 1.4267 4.1611 15 7 -0.3044 1.2189 4.3062 16 14 2.2068 0.1017 4.6546 17 1 2.5883 0.2855 6.0779 18 1 1.5847 -1.2351 4.4777 19 1 3.4176 0.2012 3.8007 20 6 3.4166 5.3278 3.8039 21 6 4.9272 5.4483 4.0152 22 8 5.5570 5.7750 2.7747 23 6 6.9769 5.9109 2.8618 24 7 2.2609 2.0668 1.0604 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 4.1324 4.3232 -1.8550 31 1 2.4956 4.3217 -2.5545 32 1 2.8591 5.3426 -1.1425 33 1 3.3327 2.1107 2.8078 34 1 3.4072 2.7912 4.4508 35 1 -0.6224 0.3775 4.6691 36 1 3.0384 6.2452 3.3528 37 1 2.9272 5.1666 4.7645 38 1 5.1306 6.2331 4.7437 39 1 5.3193 4.5003 4.3832 40 1 7.3790 6.1595 1.8797 41 1 7.2232 6.7050 3.5666 42 1 7.4112 4.9722 3.2058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815390882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:03 Heat of formation + Delta-G solvation = 19.240528 kcal Electronic energy + Delta-G solvation = -25604.078989 eV Core-core repulsion = 22008.168149 eV Total energy + Delta-G solvation = -3595.910840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.49482 -40.57847 -38.57018 -36.77483 -35.92735 -34.46573 -33.84161 -32.37044 -31.27392 -29.44679 -28.73480 -27.22339 -26.00499 -24.43932 -23.94683 -22.92969 -21.85570 -20.35201 -19.01538 -18.25513 -17.86714 -17.55321 -17.37274 -16.97661 -16.49114 -16.15994 -15.76292 -15.42855 -15.08852 -14.89979 -14.76997 -14.32719 -14.13085 -13.92445 -13.60308 -13.42040 -13.35776 -13.12808 -13.04462 -13.00337 -12.61057 -12.42859 -12.37668 -12.29228 -12.00700 -11.91683 -11.64061 -11.40930 -11.13309 -10.89816 -10.62273 -10.49116 -10.09263 -9.36560 -8.16774 -6.16587 0.54692 0.99903 1.36656 1.37694 1.40857 1.50367 2.24228 2.41058 2.42384 2.99281 3.06815 3.19715 3.72528 3.92542 3.95736 3.99975 4.18079 4.20161 4.26913 4.43349 4.55898 4.57016 4.60299 4.66136 4.66618 4.69960 4.78329 4.81968 4.85728 4.88249 4.93462 5.05864 5.09525 5.16635 5.40796 5.57769 5.74185 5.82828 6.28349 6.38580 6.60596 6.78918 7.22554 7.40031 7.45997 9.00384 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.007902 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.256881 B = 3542.684301 C = 5219.637847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 N -0.152 5.152 4 N -0.307 5.307 5 C 0.042 3.958 6 C -0.055 4.055 7 C -0.081 4.081 8 C 0.606 3.394 9 O -0.548 6.548 10 N -0.585 5.585 11 C 0.221 3.779 12 C -0.494 4.494 13 H 0.020 0.980 14 C 0.035 3.965 15 N -0.944 5.944 16 Si 0.924 3.076 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.251 1.251 20 C 0.116 3.884 21 C 0.050 3.950 22 O -0.402 6.402 23 C 0.028 3.972 24 N -0.206 5.206 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.546 0.095 -5.600 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 N -0.055 5.055 4 N -0.147 5.147 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.243 4.243 8 C 0.392 3.608 9 O -0.426 6.426 10 N -0.315 5.315 11 C 0.099 3.901 12 C -0.533 4.533 13 H 0.038 0.962 14 C -0.163 4.163 15 N -0.586 5.586 16 Si 0.748 3.252 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.175 1.175 20 C -0.006 4.006 21 C -0.027 4.027 22 O -0.321 6.321 23 C -0.069 4.069 24 N -0.054 5.054 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.021 -0.735 -5.924 11.665 hybrid contribution 0.172 0.003 0.863 0.880 sum 10.193 -0.732 -5.061 11.404 Atomic orbital electron populations 1.22095 0.92862 1.05043 1.01931 1.22373 0.96486 0.73163 1.07025 1.48747 1.43400 1.14221 0.99164 1.73727 1.19705 1.05246 1.16066 1.23674 1.01387 0.94649 0.92557 1.20181 1.02537 0.92147 0.96509 1.23113 1.11600 0.94796 0.94788 1.16735 0.76885 0.85348 0.81873 1.90661 1.51187 1.25425 1.75313 1.47711 1.67849 1.10902 1.05084 1.19731 0.95776 0.80265 0.94376 1.21108 0.90857 1.00731 1.40595 0.96173 1.25382 0.96173 0.99582 0.95160 1.70049 1.15023 1.25904 1.47576 0.86077 0.80391 0.79206 0.79506 1.19340 1.20497 1.17531 1.21633 0.94773 0.89230 0.94995 1.23001 0.92719 1.00163 0.86836 1.88100 1.20705 1.91351 1.31938 1.22846 0.80649 1.00283 1.03083 1.75211 1.11468 1.04639 1.14062 0.94722 0.91720 0.86625 0.83944 0.87567 0.89190 0.89077 0.90047 0.93970 0.94265 0.92748 0.90608 0.87628 0.89670 0.93178 0.89519 0.92554 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.13 3.68 7.24 86.38 0.63 4.30 16 3 N -0.15 -5.86 3.94 -187.49 -0.74 -6.60 16 4 N -0.31 -11.50 12.01 -46.58 -0.56 -12.06 16 5 C 0.04 1.62 7.39 43.32 0.32 1.94 16 6 C -0.06 -1.68 10.05 71.24 0.72 -0.97 16 7 C -0.08 -3.65 6.75 42.24 0.29 -3.37 16 8 C 0.61 27.74 7.32 86.77 0.64 28.37 16 9 O -0.55 -25.28 13.75 8.60 0.12 -25.16 16 10 N -0.59 -25.57 2.45 -829.63 -2.04 -27.60 16 11 C 0.22 10.22 3.82 85.63 0.33 10.55 16 12 C -0.49 -26.94 8.32 25.60 0.21 -26.73 16 13 H 0.02 1.28 8.06 -2.91 -0.02 1.26 16 14 C 0.03 1.89 5.47 84.65 0.46 2.35 16 15 N -0.94 -55.60 13.96 21.44 0.30 -55.31 16 16 Si 0.92 40.76 27.47 68.60 1.88 42.64 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 20 C 0.12 4.15 5.82 86.38 0.50 4.65 16 21 C 0.05 1.48 6.28 71.98 0.45 1.93 16 22 O -0.40 -13.42 9.28 -136.46 -1.27 -14.68 16 23 C 0.03 0.65 11.01 113.37 1.25 1.90 16 24 N -0.21 -9.36 7.79 -48.17 -0.37 -9.74 16 25 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.14 2.91 8.14 -2.38 -0.02 2.89 16 29 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 30 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.70 6.68 -2.39 -0.02 2.69 16 33 H 0.04 2.03 5.00 -2.39 -0.01 2.02 16 34 H 0.04 1.69 7.46 -2.39 -0.02 1.67 16 35 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.08 2.82 7.50 -2.38 -0.02 2.80 16 37 H 0.11 3.48 8.07 -2.39 -0.02 3.46 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -73.24 349.89 4.81 -68.43 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.95 Total: 19.04 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 6.53 Total: 21.03 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -3.41 Total: -111.30 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.15 Total: -39.84 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.64 kcal Total: -73.24 4.81 -68.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815390882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.671 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds