Wall clock time and date at job start Tue Mar 31 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48499 * 109.46859 * 274.98333 * 3 2 1 5 5 H 1.48501 * 109.47331 * 34.98068 * 3 2 1 6 6 H 1.48494 * 109.47076 * 154.98406 * 3 2 1 7 7 C 1.37872 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99868 * 189.53468 * 7 2 1 9 9 C 1.50706 * 120.00041 * 9.53764 * 7 2 1 10 10 H 1.09000 * 109.49824 * 305.47570 * 9 7 2 11 11 C 1.53044 * 109.49448 * 185.41872 * 9 7 2 12 12 C 1.53044 * 109.53546 * 178.65068 * 11 9 7 13 13 C 1.53191 * 109.31252 * 61.36555 * 12 11 9 14 14 N 1.46935 * 108.77373 * 305.36233 * 13 12 11 15 15 C 1.34772 * 120.62783 * 233.58674 * 14 13 12 16 16 O 1.21291 * 119.99829 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00546 * 0.02562 * 15 14 13 18 18 C 1.52999 * 109.47465 * 179.97438 * 17 15 14 19 19 N 1.46900 * 109.47513 * 180.02562 * 18 17 15 20 20 C 1.47009 * 110.99705 * 293.63909 * 19 18 17 21 21 C 1.53104 * 109.25711 * 177.60539 * 20 19 18 22 22 O 1.43020 * 109.25730 * 56.84461 * 21 20 19 23 23 C 1.43011 * 113.73818 * 301.33256 * 22 21 20 24 24 C 1.47009 * 111.00296 * 169.99595 * 19 18 17 25 25 C 1.46917 * 118.73636 * 53.86339 * 14 13 12 26 26 H 0.96999 * 120.00397 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46515 * 58.63101 * 11 9 7 28 28 H 1.09007 * 109.45994 * 298.66798 * 11 9 7 29 29 H 1.08994 * 109.49553 * 301.41109 * 12 11 9 30 30 H 1.09001 * 109.49603 * 181.31269 * 12 11 9 31 31 H 1.09005 * 109.58967 * 185.58013 * 13 12 11 32 32 H 1.08999 * 109.70616 * 65.21913 * 13 12 11 33 33 H 1.09001 * 109.46836 * 59.99811 * 17 15 14 34 34 H 1.08997 * 109.47242 * 300.00278 * 17 15 14 35 35 H 1.09008 * 109.46874 * 300.00087 * 18 17 15 36 36 H 1.09000 * 109.47395 * 59.99600 * 18 17 15 37 37 H 1.09003 * 109.50646 * 297.53583 * 20 19 18 38 38 H 1.08993 * 109.51456 * 57.66828 * 20 19 18 39 39 H 1.08998 * 109.50554 * 296.90687 * 21 20 19 40 40 H 1.09005 * 109.54224 * 176.80082 * 21 20 19 41 41 H 1.09006 * 109.50194 * 298.73605 * 23 22 21 42 42 H 1.09003 * 109.54150 * 178.63039 * 23 22 21 43 43 H 1.08993 * 109.51185 * 302.33080 * 24 19 18 44 44 H 1.09003 * 109.50555 * 62.41562 * 24 19 18 45 45 H 1.09003 * 109.59226 * 65.92631 * 25 14 13 46 46 H 1.09004 * 109.58941 * 186.35200 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3913 2.1071 -1.3948 5 1 1.5032 2.6200 0.8027 6 1 3.5953 1.4120 0.5920 7 6 2.0045 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1555 9 6 1.2666 -2.4902 -0.2151 10 1 0.4555 -2.5719 0.5085 11 6 2.2322 -3.6638 -0.0346 12 6 1.4764 -4.9816 -0.2202 13 6 0.9031 -5.0412 -1.6396 14 7 0.0884 -3.8405 -1.8713 15 6 -1.1870 -3.9471 -2.2936 16 8 -1.8493 -2.9484 -2.4808 17 6 -1.7907 -5.3072 -2.5321 18 6 -3.2378 -5.1475 -3.0023 19 7 -3.8265 -6.4733 -3.2343 20 6 -3.1716 -7.1503 -4.3629 21 6 -3.7733 -8.5481 -4.5313 22 8 -5.1871 -8.4340 -4.7148 23 6 -5.8569 -7.7799 -3.6337 24 6 -5.2764 -6.3745 -3.4561 25 6 0.6926 -2.5215 -1.6398 26 1 -0.4851 0.8400 -0.0004 27 1 2.6621 -3.6297 0.9664 28 1 3.0296 -3.5951 -0.7746 29 1 0.6634 -5.0397 0.5033 30 1 2.1596 -5.8173 -0.0685 31 1 0.2816 -5.9304 -1.7456 32 1 1.7171 -5.0758 -2.3636 33 1 -1.7713 -5.8808 -1.6055 34 1 -1.2158 -5.8310 -3.2958 35 1 -3.8125 -4.6239 -2.2382 36 1 -3.2577 -4.5736 -3.9288 37 1 -3.3295 -6.5738 -5.2745 38 1 -2.1030 -7.2354 -4.1660 39 1 -3.5685 -9.1422 -3.6408 40 1 -3.3312 -9.0329 -5.4018 41 1 -5.7127 -8.3518 -2.7170 42 1 -6.9220 -7.7086 -3.8545 43 1 -5.7441 -5.8933 -2.5973 44 1 -5.4681 -5.7850 -4.3527 45 1 1.4913 -2.3534 -2.3622 46 1 -0.0677 -1.7476 -1.7459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:20 Heat of formation + Delta-G solvation = -85.009447 kcal Electronic energy + Delta-G solvation = -24744.596982 eV Core-core repulsion = 21247.705867 eV Total energy + Delta-G solvation = -3496.891115 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93782 -39.30408 -36.89721 -35.96320 -33.39653 -31.87291 -31.55075 -31.11263 -29.76905 -27.20996 -25.05781 -24.58851 -24.25577 -22.37377 -21.81207 -20.56677 -19.60990 -18.19212 -17.19777 -16.42558 -16.34106 -15.90313 -15.65554 -15.37488 -15.28242 -14.72886 -14.60481 -14.39569 -13.88460 -13.71093 -13.48143 -12.86843 -12.76761 -12.58302 -12.40188 -12.12753 -12.03026 -11.87568 -11.63108 -11.51927 -11.02123 -10.95631 -10.90478 -10.68854 -10.55043 -10.40592 -10.26065 -9.91726 -9.89731 -9.35734 -9.07254 -8.90820 -8.57731 -8.39949 -7.78043 -6.02914 -4.07474 3.21675 3.30483 3.38346 3.39296 3.40613 3.62664 3.89123 4.43149 4.62922 4.75395 4.75968 4.91526 5.01391 5.03349 5.16168 5.18571 5.28260 5.29446 5.31611 5.39284 5.48713 5.53957 5.59650 5.66067 5.66682 5.71521 5.92671 5.98322 6.00637 6.16590 6.29739 6.57997 6.62017 6.75732 6.78200 6.82339 6.89004 6.94570 7.09014 7.21572 7.60011 7.84301 7.96568 8.19474 8.37717 8.84340 8.97225 9.56908 11.04980 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.003150 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.804084 B = 8887.875992 C = 9580.963783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.036 0.964 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.110 3.890 14 N -0.606 5.606 15 C 0.506 3.494 16 O -0.543 6.543 17 C -0.135 4.135 18 C 0.072 3.928 19 N -0.539 5.539 20 C 0.012 3.988 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.065 3.935 24 C 0.017 3.983 25 C 0.118 3.882 26 H 0.263 0.737 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -17.568 -6.983 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.054 0.946 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.014 4.014 14 N -0.339 5.339 15 C 0.292 3.708 16 O -0.421 6.421 17 C -0.175 4.175 18 C -0.056 4.056 19 N -0.264 5.264 20 C -0.116 4.116 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.111 4.111 25 C -0.003 4.003 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.552 -17.253 -6.821 19.675 hybrid contribution 0.638 1.555 -0.439 1.737 sum -5.914 -15.698 -7.260 18.279 Atomic orbital electron populations 1.69985 1.05855 1.26841 1.48724 1.25039 0.94775 0.99236 0.94766 0.86648 0.79987 0.83767 0.78049 1.20640 1.21265 1.19873 1.21054 0.94111 0.90595 1.50463 0.92391 1.19046 0.94367 0.92298 0.92289 0.94576 1.21626 0.98552 0.94138 1.00494 1.21949 1.00073 0.99126 0.96082 1.21643 0.94881 0.87513 0.97366 1.48473 1.11550 1.08852 1.65046 1.20411 0.81975 0.90754 0.77618 1.90707 1.60333 1.38975 1.52103 1.21627 0.96173 0.96258 1.03449 1.21833 0.94386 0.88047 1.01297 1.62204 1.03177 1.20899 1.40134 1.22862 1.00038 0.95939 0.92784 1.22670 0.81071 0.95468 1.02064 1.87971 1.19828 1.78987 1.43911 1.22669 0.96535 0.91600 0.90448 1.22770 0.88727 0.97991 1.01587 1.22249 0.97604 0.81743 0.98676 0.92754 0.92922 0.93306 0.92057 0.92210 0.90998 0.92104 0.88482 0.89691 0.89596 0.93774 0.93862 0.89336 0.92209 0.88551 0.92204 0.88504 0.89356 0.93833 0.93864 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 12.23 55.43 0.68 -25.11 16 2 C 0.07 1.82 5.24 -17.82 -0.09 1.72 16 3 Si 0.89 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.17 8.48 -34.44 -0.29 -14.46 16 8 H 0.06 1.54 7.77 -52.48 -0.41 1.13 16 9 C 0.04 0.96 2.12 -91.42 -0.19 0.76 16 10 H 0.04 1.00 8.09 -51.93 -0.42 0.58 16 11 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 12 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 13 C 0.11 1.62 6.34 -3.71 -0.02 1.59 16 14 N -0.61 -11.73 2.97 -172.50 -0.51 -12.24 16 15 C 0.51 9.69 7.70 -10.99 -0.08 9.61 16 16 O -0.54 -12.88 15.40 5.55 0.09 -12.79 16 17 C -0.13 -1.83 3.98 -27.89 -0.11 -1.94 16 18 C 0.07 0.97 4.24 -3.82 -0.02 0.95 16 19 N -0.54 -6.06 4.73 -234.32 -1.11 -7.17 16 20 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 21 C 0.06 0.56 7.01 37.21 0.26 0.82 16 22 O -0.39 -4.13 10.83 -35.23 -0.38 -4.52 16 23 C 0.06 0.58 7.01 37.21 0.26 0.84 16 24 C 0.02 0.18 5.64 -3.72 -0.02 0.16 16 25 C 0.12 2.80 5.51 -3.49 -0.02 2.78 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.22 7.69 -51.93 -0.40 0.82 16 34 H 0.08 0.96 6.32 -51.93 -0.33 0.64 16 35 H 0.09 1.27 8.00 -51.92 -0.42 0.86 16 36 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.77 6.38 -51.93 -0.33 0.44 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 2.90 5.96 -51.93 -0.31 2.59 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -32.01 355.23 -9.53 -41.54 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.97 Total: 0.27 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.65 Total: -1.61 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.94 Total: -44.52 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.30 Total: -17.31 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.01 -9.53 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.470 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds