Wall clock time and date at job start Tue Mar 31 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48499 * 109.46859 * 274.98333 * 3 2 1 5 5 H 1.48501 * 109.47331 * 34.98068 * 3 2 1 6 6 H 1.48494 * 109.47076 * 154.98406 * 3 2 1 7 7 C 1.37872 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99868 * 189.53468 * 7 2 1 9 9 C 1.50706 * 120.00041 * 9.53764 * 7 2 1 10 10 H 1.09000 * 109.49824 * 305.47570 * 9 7 2 11 11 C 1.53044 * 109.49448 * 185.41872 * 9 7 2 12 12 C 1.53044 * 109.53546 * 178.65068 * 11 9 7 13 13 C 1.53191 * 109.31252 * 61.36555 * 12 11 9 14 14 N 1.46935 * 108.77373 * 305.36233 * 13 12 11 15 15 C 1.34772 * 120.62783 * 233.58674 * 14 13 12 16 16 O 1.21291 * 119.99829 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00546 * 0.02562 * 15 14 13 18 18 C 1.52999 * 109.47465 * 179.97438 * 17 15 14 19 19 N 1.46900 * 109.47513 * 180.02562 * 18 17 15 20 20 C 1.47009 * 110.99705 * 293.63909 * 19 18 17 21 21 C 1.53104 * 109.25711 * 177.60539 * 20 19 18 22 22 O 1.43020 * 109.25730 * 56.84461 * 21 20 19 23 23 C 1.43011 * 113.73818 * 301.33256 * 22 21 20 24 24 C 1.47009 * 111.00296 * 169.99595 * 19 18 17 25 25 C 1.46917 * 118.73636 * 53.86339 * 14 13 12 26 26 H 0.96999 * 120.00397 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46515 * 58.63101 * 11 9 7 28 28 H 1.09007 * 109.45994 * 298.66798 * 11 9 7 29 29 H 1.08994 * 109.49553 * 301.41109 * 12 11 9 30 30 H 1.09001 * 109.49603 * 181.31269 * 12 11 9 31 31 H 1.09005 * 109.58967 * 185.58013 * 13 12 11 32 32 H 1.08999 * 109.70616 * 65.21913 * 13 12 11 33 33 H 1.09001 * 109.46836 * 59.99811 * 17 15 14 34 34 H 1.08997 * 109.47242 * 300.00278 * 17 15 14 35 35 H 1.09008 * 109.46874 * 300.00087 * 18 17 15 36 36 H 1.09000 * 109.47395 * 59.99600 * 18 17 15 37 37 H 1.09003 * 109.50646 * 297.53583 * 20 19 18 38 38 H 1.08993 * 109.51456 * 57.66828 * 20 19 18 39 39 H 1.08998 * 109.50554 * 296.90687 * 21 20 19 40 40 H 1.09005 * 109.54224 * 176.80082 * 21 20 19 41 41 H 1.09006 * 109.50194 * 298.73605 * 23 22 21 42 42 H 1.09003 * 109.54150 * 178.63039 * 23 22 21 43 43 H 1.08993 * 109.51185 * 302.33080 * 24 19 18 44 44 H 1.09003 * 109.50555 * 62.41562 * 24 19 18 45 45 H 1.09003 * 109.59226 * 65.92631 * 25 14 13 46 46 H 1.09004 * 109.58941 * 186.35200 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3913 2.1071 -1.3948 5 1 1.5032 2.6200 0.8027 6 1 3.5953 1.4120 0.5920 7 6 2.0045 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1555 9 6 1.2666 -2.4902 -0.2151 10 1 0.4555 -2.5719 0.5085 11 6 2.2322 -3.6638 -0.0346 12 6 1.4764 -4.9816 -0.2202 13 6 0.9031 -5.0412 -1.6396 14 7 0.0884 -3.8405 -1.8713 15 6 -1.1870 -3.9471 -2.2936 16 8 -1.8493 -2.9484 -2.4808 17 6 -1.7907 -5.3072 -2.5321 18 6 -3.2378 -5.1475 -3.0023 19 7 -3.8265 -6.4733 -3.2343 20 6 -3.1716 -7.1503 -4.3629 21 6 -3.7733 -8.5481 -4.5313 22 8 -5.1871 -8.4340 -4.7148 23 6 -5.8569 -7.7799 -3.6337 24 6 -5.2764 -6.3745 -3.4561 25 6 0.6926 -2.5215 -1.6398 26 1 -0.4851 0.8400 -0.0004 27 1 2.6621 -3.6297 0.9664 28 1 3.0296 -3.5951 -0.7746 29 1 0.6634 -5.0397 0.5033 30 1 2.1596 -5.8173 -0.0685 31 1 0.2816 -5.9304 -1.7456 32 1 1.7171 -5.0758 -2.3636 33 1 -1.7713 -5.8808 -1.6055 34 1 -1.2158 -5.8310 -3.2958 35 1 -3.8125 -4.6239 -2.2382 36 1 -3.2577 -4.5736 -3.9288 37 1 -3.3295 -6.5738 -5.2745 38 1 -2.1030 -7.2354 -4.1660 39 1 -3.5685 -9.1422 -3.6408 40 1 -3.3312 -9.0329 -5.4018 41 1 -5.7127 -8.3518 -2.7170 42 1 -6.9220 -7.7086 -3.8545 43 1 -5.7441 -5.8933 -2.5973 44 1 -5.4681 -5.7850 -4.3527 45 1 1.4913 -2.3534 -2.3622 46 1 -0.0677 -1.7476 -1.7459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:20 Heat of formation + Delta-G solvation = -107.818493 kcal Electronic energy + Delta-G solvation = -24745.586057 eV Core-core repulsion = 21247.705867 eV Total energy + Delta-G solvation = -3497.880189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17343 -40.38547 -38.42492 -36.95135 -35.29202 -33.51741 -32.58482 -32.03819 -31.39762 -28.25670 -26.93300 -26.01491 -25.00088 -23.66169 -23.27793 -21.43694 -21.16413 -19.66944 -18.62604 -18.08197 -17.19771 -17.14647 -16.79185 -16.65188 -16.50648 -16.02592 -15.82258 -15.51185 -15.20270 -15.02141 -14.71043 -14.48283 -14.33103 -13.93522 -13.65908 -13.46100 -13.29783 -13.08175 -12.88812 -12.73186 -12.48335 -12.34481 -12.29849 -12.22615 -11.88586 -11.77251 -11.62568 -11.46113 -11.20026 -10.87352 -10.66794 -10.58321 -10.52896 -9.49065 -9.40737 -8.16640 -6.28173 1.37808 1.39578 1.49968 1.73362 2.13940 2.40512 2.75570 2.98923 3.15048 3.71615 3.77512 3.94073 3.99757 4.07643 4.11295 4.20955 4.21749 4.33747 4.35451 4.38884 4.45902 4.60673 4.63095 4.73990 4.77340 4.80039 4.83093 4.83762 4.89182 4.91299 4.95514 5.04889 5.09670 5.20667 5.30974 5.33919 5.55838 5.64256 5.83327 5.88102 5.92203 5.93122 6.19751 6.32445 6.67350 6.85785 7.33611 7.40893 8.90533 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.003150 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.804084 B = 8887.875992 C = 9580.963783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.010 1.010 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.104 3.896 14 N -0.611 5.611 15 C 0.495 3.505 16 O -0.602 6.602 17 C -0.115 4.115 18 C 0.079 3.921 19 N -0.535 5.535 20 C 0.009 3.991 21 C 0.064 3.936 22 O -0.407 6.407 23 C 0.067 3.933 24 C 0.014 3.986 25 C 0.132 3.868 26 H 0.259 0.741 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.031 0.969 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.042 0.958 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -20.682 -7.479 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.008 0.992 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.018 4.018 14 N -0.342 5.342 15 C 0.284 3.716 16 O -0.483 6.483 17 C -0.155 4.155 18 C -0.049 4.049 19 N -0.261 5.261 20 C -0.119 4.119 21 C -0.013 4.013 22 O -0.326 6.326 23 C -0.009 4.009 24 C -0.115 4.115 25 C 0.009 3.991 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.109 0.891 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.049 -20.422 -7.311 22.271 hybrid contribution 0.176 2.508 -0.273 2.529 sum -4.873 -17.915 -7.584 20.055 Atomic orbital electron populations 1.70155 1.07628 1.27284 1.50403 1.25880 0.95429 1.02942 0.94607 0.85620 0.79106 0.79403 0.78051 1.20311 1.21334 1.18386 1.21524 0.94440 0.92037 1.49511 0.92007 1.18968 0.93930 0.93823 0.91408 0.99185 1.21524 0.97890 0.94343 1.00620 1.21920 1.00167 0.98049 0.96392 1.22053 0.95721 0.86712 0.97285 1.48530 1.12251 1.08716 1.64714 1.21465 0.81482 0.92378 0.76231 1.90683 1.61692 1.41538 1.54436 1.21554 0.95860 0.92609 1.05485 1.21637 0.94494 0.89073 0.99688 1.62239 1.03725 1.19063 1.41027 1.22997 1.01048 0.96230 0.91640 1.22820 0.80203 0.94798 1.03460 1.87952 1.20914 1.79057 1.44685 1.22745 0.97271 0.90411 0.90498 1.22858 0.88336 0.99042 1.01218 1.21634 0.95992 0.83323 0.98166 0.93234 0.93266 0.92341 0.93141 0.87654 0.86629 0.89952 0.86295 0.86185 0.91759 0.95792 0.95029 0.87555 0.91300 0.86608 0.91469 0.86859 0.89086 0.94967 0.93930 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.76 12.23 21.45 0.26 -56.50 16 2 C 0.01 0.63 5.24 84.65 0.44 1.07 16 3 Si 0.95 44.72 29.55 68.60 2.03 46.74 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -29.74 8.48 25.60 0.22 -29.52 16 8 H 0.06 3.29 7.77 -2.91 -0.02 3.27 16 9 C 0.04 1.91 2.12 -11.31 -0.02 1.89 16 10 H -0.01 -0.59 8.09 -2.39 -0.02 -0.61 16 11 C -0.11 -4.00 5.11 30.62 0.16 -3.85 16 12 C -0.13 -3.53 6.08 30.67 0.19 -3.34 16 13 C 0.10 2.65 6.34 86.36 0.55 3.20 16 14 N -0.61 -23.26 2.97 -818.05 -2.43 -25.68 16 15 C 0.50 19.04 7.70 87.66 0.67 19.71 16 16 O -0.60 -30.13 15.40 -3.06 -0.05 -30.18 16 17 C -0.12 -2.86 3.98 29.85 0.12 -2.74 16 18 C 0.08 2.11 4.24 86.30 0.37 2.48 16 19 N -0.54 -11.15 4.73 -895.24 -4.23 -15.38 16 20 C 0.01 0.15 5.44 86.32 0.47 0.62 16 21 C 0.06 0.93 7.01 72.02 0.50 1.43 16 22 O -0.41 -7.78 10.83 -148.98 -1.61 -9.40 16 23 C 0.07 1.08 7.01 72.01 0.50 1.58 16 24 C 0.01 0.26 5.64 86.31 0.49 0.75 16 25 C 0.13 6.46 5.51 86.51 0.48 6.94 16 26 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.12 2.00 5.93 -2.38 -0.01 1.99 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 2.53 7.69 -2.39 -0.02 2.51 16 34 H 0.12 2.18 6.32 -2.39 -0.02 2.17 16 35 H 0.06 1.97 8.00 -2.38 -0.02 1.95 16 36 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 37 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 1.40 6.38 -2.39 -0.02 1.39 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 44 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 3.08 5.96 -2.38 -0.01 3.06 16 Total: -1.00 -76.07 355.23 0.04 -76.03 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.94 Total: 14.14 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 5.13 Total: 0.22 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -6.39 Total: -97.56 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.66 Total: -39.58 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.07 0.04 -76.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.787 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds