Wall clock time and date at job start Tue Mar 31 2020 03:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00241 * 2 1 4 4 H 1.48507 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47105 * 300.00390 * 3 2 1 6 6 H 1.48497 * 109.46755 * 60.00389 * 3 2 1 7 7 C 1.37882 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47343 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47591 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99534 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00403 * 179.97438 * 11 10 9 14 14 C 1.47176 * 125.70823 * 359.97438 * 13 11 10 15 15 C 1.54214 * 106.52294 * 196.82922 * 14 13 11 16 16 C 1.55286 * 103.31962 * 331.74453 * 15 14 13 17 17 H 1.08996 * 111.78244 * 148.11609 * 16 15 14 18 18 C 1.45881 * 125.71149 * 179.97438 * 13 11 10 19 19 H 1.08992 * 104.72805 * 70.47762 * 18 13 11 20 20 C 1.49528 * 114.38683 * 315.82453 * 18 13 11 21 21 C 1.51764 * 114.92900 * 262.55818 * 20 18 13 22 22 C 1.52782 * 110.34430 * 316.64365 * 21 20 18 23 23 N 1.46688 * 108.47929 * 60.15063 * 22 21 20 24 24 C 1.46903 * 110.99809 * 168.55675 * 23 22 21 25 25 C 1.53004 * 109.46957 * 63.20312 * 24 23 22 26 26 O 1.42895 * 109.47002 * 71.36414 * 25 24 23 27 27 H 0.97000 * 120.00077 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46755 * 60.00539 * 9 7 2 29 29 H 1.08997 * 109.47136 * 300.00507 * 9 7 2 30 30 H 1.09002 * 109.47126 * 59.99653 * 10 9 7 31 31 H 1.09001 * 109.47420 * 300.00670 * 10 9 7 32 32 H 1.08999 * 110.04375 * 316.09153 * 14 13 11 33 33 H 1.09004 * 110.04979 * 77.56674 * 14 13 11 34 34 H 1.09005 * 110.65166 * 90.20023 * 15 14 13 35 35 H 1.08995 * 110.65402 * 213.12412 * 15 14 13 36 36 H 1.09004 * 108.38961 * 141.14846 * 20 18 13 37 37 H 1.08998 * 108.25603 * 23.87577 * 20 18 13 38 38 H 1.09007 * 109.32474 * 196.37482 * 21 20 18 39 39 H 1.09007 * 109.32335 * 76.91359 * 21 20 18 40 40 H 1.08993 * 109.63411 * 300.45657 * 22 21 20 41 41 H 1.09001 * 109.80389 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47155 * 303.20101 * 24 23 22 43 43 H 1.08998 * 109.46905 * 183.20092 * 24 23 22 44 44 H 1.09000 * 109.46361 * 191.36373 * 25 24 23 45 45 H 1.08995 * 109.46840 * 311.35817 * 25 24 23 46 46 H 0.96704 * 113.99360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0021 13 7 2.1654 -6.1344 -0.0018 14 6 3.6298 -6.2808 -0.0025 15 6 3.9252 -7.7325 -0.4311 16 6 2.6676 -8.5090 0.0451 17 1 2.4391 -9.3495 -0.6102 18 6 1.5653 -7.4641 -0.0019 19 1 1.1298 -7.5714 -0.9953 20 6 0.4214 -7.6253 0.9476 21 6 0.7806 -8.2554 2.2807 22 6 1.7163 -9.4448 2.0710 23 7 2.9369 -8.9659 1.4134 24 6 3.9821 -9.9981 1.4276 25 6 3.5128 -11.2102 0.6204 26 8 3.5074 -10.8830 -0.7706 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8905 32 1 4.0747 -5.5838 -0.7126 33 1 4.0241 -6.0989 0.9974 34 1 4.0313 -7.7996 -1.5139 35 1 4.8210 -8.1052 0.0655 36 1 -0.3385 -8.2430 0.4688 37 1 -0.0067 -6.6409 1.1366 38 1 -0.1291 -8.5950 2.7759 39 1 1.2747 -7.5139 2.9086 40 1 1.2282 -10.1881 1.4407 41 1 1.9688 -9.8901 3.0334 42 1 4.1800 -10.3007 2.4558 43 1 4.8941 -9.5977 0.9848 44 1 4.1898 -12.0466 0.7944 45 1 2.5058 -11.4868 0.9327 46 1 3.2200 -11.6070 -1.3437 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889758023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:44 Heat of formation + Delta-G solvation = -75.716652 kcal Electronic energy + Delta-G solvation = -25348.084400 eV Core-core repulsion = 21851.596251 eV Total energy + Delta-G solvation = -3496.488149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76904 -38.68523 -37.02316 -35.56345 -33.91875 -33.32331 -31.35326 -30.41539 -29.24731 -28.33363 -25.70835 -24.70217 -23.43027 -22.41609 -21.68298 -20.93227 -19.14760 -18.06511 -17.85913 -16.82362 -16.67127 -15.96241 -15.65117 -15.50777 -15.09082 -14.56578 -14.35436 -14.12098 -13.84911 -13.63120 -13.12782 -13.08803 -12.84039 -12.52462 -12.28327 -12.18213 -11.97737 -11.86083 -11.69446 -11.37618 -11.27754 -11.01475 -10.90618 -10.71262 -10.53698 -10.49056 -10.44415 -10.07836 -9.86156 -9.54523 -9.04913 -8.82962 -8.31981 -8.27517 -8.11293 -5.90604 -3.94404 3.33802 3.36454 3.42713 3.45766 3.49486 3.62176 3.91625 4.42396 4.52603 4.62849 4.71084 4.79158 4.86959 4.93471 5.06742 5.11777 5.24941 5.30415 5.36385 5.44334 5.48165 5.56054 5.57729 5.63615 5.69209 5.86573 5.90847 5.95579 6.00470 6.13211 6.15037 6.31907 6.35902 6.37060 6.51938 6.86548 6.96291 6.99867 7.04045 7.16377 7.81400 7.94386 8.05389 8.14209 8.45817 8.89164 9.14588 9.68710 11.20468 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030688 B = 0.003259 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.179539 B = 8590.745419 C = 9004.878707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.527 3.473 12 O -0.535 6.535 13 N -0.616 5.616 14 C 0.108 3.892 15 C -0.116 4.116 16 C 0.076 3.924 17 H 0.100 0.900 18 C 0.153 3.847 19 H 0.043 0.957 20 C -0.134 4.134 21 C -0.109 4.109 22 C 0.054 3.946 23 N -0.526 5.526 24 C 0.051 3.949 25 C 0.035 3.965 26 O -0.561 6.561 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -26.502 1.922 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.164 4.164 11 C 0.318 3.682 12 O -0.411 6.411 13 N -0.353 5.353 14 C -0.015 4.015 15 C -0.154 4.154 16 C -0.033 4.033 17 H 0.117 0.883 18 C 0.048 3.952 19 H 0.061 0.939 20 C -0.172 4.172 21 C -0.147 4.147 22 C -0.073 4.073 23 N -0.250 5.250 24 C -0.077 4.077 25 C -0.044 4.044 26 O -0.367 6.367 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.511 -25.291 2.401 26.792 hybrid contribution 0.009 -0.422 -0.606 0.738 sum 8.520 -25.713 1.795 27.147 Atomic orbital electron populations 1.70011 1.06040 1.26371 1.50478 1.25027 0.94817 0.99191 0.95403 0.86544 0.80045 0.83901 0.77529 1.19736 1.21066 1.21051 1.21271 0.92962 0.91021 1.50988 0.92585 1.18900 0.93194 0.89381 0.98547 1.21839 1.00590 0.91701 1.02256 1.21222 0.88078 0.84364 0.74504 1.90612 1.14250 1.86967 1.49288 1.48408 1.06910 1.04962 1.74992 1.21968 0.81325 0.96838 1.01369 1.22680 0.97886 0.93986 1.00868 1.22665 0.94535 0.96734 0.89316 0.88288 1.19894 0.93174 0.83169 0.98949 0.93926 1.20867 0.97073 1.04064 0.95230 1.21201 0.98357 0.97307 0.97818 1.22035 0.90609 0.96447 0.98233 1.62081 1.08783 1.36013 1.18117 1.22416 0.96490 0.89405 0.99390 1.23039 1.00118 0.98963 0.82309 1.86618 1.90774 1.42139 1.17181 0.93073 0.95865 0.95867 0.90404 0.90485 0.91079 0.91595 0.90960 0.89753 0.92334 0.88491 0.91706 0.91311 0.94903 0.90934 0.89308 0.89388 0.93477 0.93466 0.77950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.99 13.29 55.43 0.74 -27.26 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.61 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 10 C -0.12 -2.71 4.72 -27.89 -0.13 -2.84 16 11 C 0.53 11.10 7.58 -10.99 -0.08 11.02 16 12 O -0.53 -13.19 14.13 5.56 0.08 -13.11 16 13 N -0.62 -10.28 3.24 -167.87 -0.54 -10.82 16 14 C 0.11 1.43 6.60 -3.04 -0.02 1.41 16 15 C -0.12 -1.25 6.42 -24.88 -0.16 -1.41 16 16 C 0.08 0.85 2.17 -67.11 -0.15 0.71 16 17 H 0.10 1.09 5.09 -51.93 -0.26 0.82 16 18 C 0.15 2.24 2.68 -70.50 -0.19 2.05 16 19 H 0.04 0.67 8.04 -51.93 -0.42 0.25 16 20 C -0.13 -1.97 5.45 -29.07 -0.16 -2.13 16 21 C -0.11 -1.30 6.14 -27.47 -0.17 -1.47 16 22 C 0.05 0.52 4.87 -4.05 -0.02 0.50 16 23 N -0.53 -5.28 4.49 -226.26 -1.02 -6.30 16 24 C 0.05 0.38 5.62 -3.82 -0.02 0.36 16 25 C 0.04 0.21 6.87 37.16 0.26 0.47 16 26 O -0.56 -3.82 10.49 -35.23 -0.37 -4.19 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.08 1.56 7.93 -51.93 -0.41 1.15 16 32 H 0.07 0.90 7.73 -51.93 -0.40 0.50 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.80 5.96 -51.93 -0.31 0.49 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.81 5.50 -51.93 -0.29 1.52 16 38 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.30 6.75 -51.93 -0.35 -0.05 16 41 H 0.07 0.58 8.00 -51.93 -0.42 0.17 16 42 H 0.09 0.54 8.06 -51.93 -0.42 0.12 16 43 H 0.09 0.68 6.14 -51.93 -0.32 0.36 16 44 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.05 0.29 6.24 -51.93 -0.32 -0.04 16 46 H 0.37 1.15 9.12 45.56 0.42 1.57 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -35.20 348.28 -9.10 -44.30 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.84 Total: -0.53 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.37 Total: -4.42 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.82 Total: -44.37 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.29 Total: -17.30 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.20 -9.10 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889758023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.415 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds