Wall clock time and date at job start Tue Mar 31 2020 03:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00241 * 2 1 4 4 H 1.48507 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47105 * 300.00390 * 3 2 1 6 6 H 1.48497 * 109.46755 * 60.00389 * 3 2 1 7 7 C 1.37882 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47343 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47591 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99534 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00403 * 179.97438 * 11 10 9 14 14 C 1.47176 * 125.70823 * 359.97438 * 13 11 10 15 15 C 1.54214 * 106.52294 * 196.82922 * 14 13 11 16 16 C 1.55286 * 103.31962 * 331.74453 * 15 14 13 17 17 H 1.08996 * 111.78244 * 148.11609 * 16 15 14 18 18 C 1.45881 * 125.71149 * 179.97438 * 13 11 10 19 19 H 1.08992 * 104.72805 * 70.47762 * 18 13 11 20 20 C 1.49528 * 114.38683 * 315.82453 * 18 13 11 21 21 C 1.51764 * 114.92900 * 262.55818 * 20 18 13 22 22 C 1.52782 * 110.34430 * 316.64365 * 21 20 18 23 23 N 1.46688 * 108.47929 * 60.15063 * 22 21 20 24 24 C 1.46903 * 110.99809 * 168.55675 * 23 22 21 25 25 C 1.53004 * 109.46957 * 63.20312 * 24 23 22 26 26 O 1.42895 * 109.47002 * 71.36414 * 25 24 23 27 27 H 0.97000 * 120.00077 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46755 * 60.00539 * 9 7 2 29 29 H 1.08997 * 109.47136 * 300.00507 * 9 7 2 30 30 H 1.09002 * 109.47126 * 59.99653 * 10 9 7 31 31 H 1.09001 * 109.47420 * 300.00670 * 10 9 7 32 32 H 1.08999 * 110.04375 * 316.09153 * 14 13 11 33 33 H 1.09004 * 110.04979 * 77.56674 * 14 13 11 34 34 H 1.09005 * 110.65166 * 90.20023 * 15 14 13 35 35 H 1.08995 * 110.65402 * 213.12412 * 15 14 13 36 36 H 1.09004 * 108.38961 * 141.14846 * 20 18 13 37 37 H 1.08998 * 108.25603 * 23.87577 * 20 18 13 38 38 H 1.09007 * 109.32474 * 196.37482 * 21 20 18 39 39 H 1.09007 * 109.32335 * 76.91359 * 21 20 18 40 40 H 1.08993 * 109.63411 * 300.45657 * 22 21 20 41 41 H 1.09001 * 109.80389 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47155 * 303.20101 * 24 23 22 43 43 H 1.08998 * 109.46905 * 183.20092 * 24 23 22 44 44 H 1.09000 * 109.46361 * 191.36373 * 25 24 23 45 45 H 1.08995 * 109.46840 * 311.35817 * 25 24 23 46 46 H 0.96704 * 113.99360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0021 13 7 2.1654 -6.1344 -0.0018 14 6 3.6298 -6.2808 -0.0025 15 6 3.9252 -7.7325 -0.4311 16 6 2.6676 -8.5090 0.0451 17 1 2.4391 -9.3495 -0.6102 18 6 1.5653 -7.4641 -0.0019 19 1 1.1298 -7.5714 -0.9953 20 6 0.4214 -7.6253 0.9476 21 6 0.7806 -8.2554 2.2807 22 6 1.7163 -9.4448 2.0710 23 7 2.9369 -8.9659 1.4134 24 6 3.9821 -9.9981 1.4276 25 6 3.5128 -11.2102 0.6204 26 8 3.5074 -10.8830 -0.7706 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8905 32 1 4.0747 -5.5838 -0.7126 33 1 4.0241 -6.0989 0.9974 34 1 4.0313 -7.7996 -1.5139 35 1 4.8210 -8.1052 0.0655 36 1 -0.3385 -8.2430 0.4688 37 1 -0.0067 -6.6409 1.1366 38 1 -0.1291 -8.5950 2.7759 39 1 1.2747 -7.5139 2.9086 40 1 1.2282 -10.1881 1.4407 41 1 1.9688 -9.8901 3.0334 42 1 4.1800 -10.3007 2.4558 43 1 4.8941 -9.5977 0.9848 44 1 4.1898 -12.0466 0.7944 45 1 2.5058 -11.4868 0.9327 46 1 3.2200 -11.6070 -1.3437 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889758023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:43 Heat of formation + Delta-G solvation = -102.935215 kcal Electronic energy + Delta-G solvation = -25349.264685 eV Core-core repulsion = 21851.596251 eV Total energy + Delta-G solvation = -3497.668435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88805 -39.95507 -37.88449 -36.55134 -35.62093 -34.73034 -33.17007 -31.81881 -30.27093 -29.10678 -27.71808 -25.54750 -24.79180 -23.56100 -22.89160 -22.21221 -20.31256 -19.44930 -18.61448 -18.37029 -17.76311 -17.36340 -16.91787 -16.61423 -16.45633 -16.07591 -15.68039 -15.45267 -14.88787 -14.53026 -14.27563 -14.25753 -14.17995 -13.87948 -13.72197 -13.36810 -13.17324 -12.95870 -12.85078 -12.77209 -12.54565 -12.44310 -12.26903 -12.13888 -11.97825 -11.75767 -11.62852 -11.40891 -11.33413 -11.25434 -10.71923 -10.58502 -10.50448 -9.52286 -9.04151 -8.18569 -6.32981 1.41484 1.43576 1.57058 1.68181 2.06671 2.43242 2.93086 3.14118 3.37425 3.54466 3.67110 3.84497 4.03391 4.07914 4.10376 4.22918 4.24931 4.36554 4.42981 4.47517 4.50538 4.50939 4.59259 4.61446 4.70397 4.80556 4.85828 4.96630 4.97266 5.00847 5.04655 5.13590 5.21578 5.23701 5.28300 5.36313 5.47705 5.60636 5.66867 5.83679 6.16707 6.20894 6.24823 6.57913 6.85256 6.91055 7.27400 7.37254 8.94536 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030688 B = 0.003259 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.179539 B = 8590.745419 C = 9004.878707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.977 3.023 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.046 3.954 10 C -0.110 4.110 11 C 0.522 3.478 12 O -0.585 6.585 13 N -0.609 5.609 14 C 0.098 3.902 15 C -0.105 4.105 16 C 0.087 3.913 17 H 0.110 0.890 18 C 0.146 3.854 19 H 0.025 0.975 20 C -0.132 4.132 21 C -0.105 4.105 22 C 0.061 3.939 23 N -0.539 5.539 24 C 0.049 3.951 25 C 0.038 3.962 26 O -0.580 6.580 27 H 0.263 0.737 28 H -0.018 1.018 29 H -0.019 1.019 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.319 -28.211 2.189 30.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.008 3.992 10 C -0.150 4.150 11 C 0.313 3.687 12 O -0.466 6.466 13 N -0.342 5.342 14 C -0.023 4.023 15 C -0.143 4.143 16 C -0.021 4.021 17 H 0.127 0.873 18 C 0.042 3.958 19 H 0.044 0.956 20 C -0.171 4.171 21 C -0.143 4.143 22 C -0.066 4.066 23 N -0.264 5.264 24 C -0.078 4.078 25 C -0.041 4.041 26 O -0.389 6.389 27 H 0.072 0.928 28 H 0.000 1.000 29 H -0.001 1.001 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.883 -27.066 2.664 29.679 hybrid contribution -1.063 0.030 -0.692 1.269 sum 10.820 -27.036 1.972 29.187 Atomic orbital electron populations 1.70191 1.08357 1.27780 1.51461 1.26169 0.95762 1.04024 0.94543 0.85234 0.79283 0.77861 0.77624 1.17567 1.20495 1.20506 1.21718 0.93946 0.91527 1.50830 0.90689 1.18662 0.93567 0.92380 0.94564 1.21578 0.99216 0.90096 1.04107 1.21004 0.87409 0.85538 0.74771 1.90596 1.16269 1.87798 1.51915 1.48345 1.08770 1.04536 1.72582 1.22295 0.78739 0.99130 1.02177 1.22671 0.98317 0.91798 1.01510 1.22552 0.93108 0.95781 0.90699 0.87295 1.20165 0.94549 0.83101 0.97935 0.95648 1.20811 0.97300 1.01853 0.97121 1.21168 0.99617 0.97881 0.95596 1.21996 0.89977 0.95091 0.99578 1.62041 1.09492 1.37785 1.17042 1.22512 0.95292 0.89179 1.00810 1.22986 1.00540 0.98707 0.81835 1.86531 1.90905 1.43620 1.17803 0.92820 0.99996 1.00089 0.88543 0.88304 0.90136 0.91017 0.90266 0.87625 0.91665 0.93146 0.90451 0.93372 0.93876 0.88687 0.87640 0.89410 0.91683 0.93388 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.12 13.29 21.45 0.28 -60.83 16 2 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 3 Si 0.98 45.48 29.54 68.60 2.03 47.51 16 4 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.07 4.07 7.74 -2.91 -0.02 4.04 16 9 C 0.05 2.71 4.26 29.84 0.13 2.83 16 10 C -0.11 -4.93 4.72 29.85 0.14 -4.79 16 11 C 0.52 23.06 7.58 87.66 0.66 23.73 16 12 O -0.59 -31.24 14.13 -3.02 -0.04 -31.29 16 13 N -0.61 -20.54 3.24 -803.41 -2.60 -23.14 16 14 C 0.10 2.43 6.60 86.66 0.57 3.00 16 15 C -0.10 -1.97 6.42 31.79 0.20 -1.77 16 16 C 0.09 1.79 2.17 45.39 0.10 1.88 16 17 H 0.11 2.11 5.09 -2.39 -0.01 2.10 16 18 C 0.15 4.33 2.68 43.66 0.12 4.44 16 19 H 0.03 0.82 8.04 -2.39 -0.02 0.80 16 20 C -0.13 -4.06 5.45 29.08 0.16 -3.90 16 21 C -0.10 -2.47 6.14 30.12 0.18 -2.29 16 22 C 0.06 1.01 4.87 86.27 0.42 1.43 16 23 N -0.54 -9.36 4.49 -869.76 -3.91 -13.27 16 24 C 0.05 0.55 5.62 86.30 0.49 1.03 16 25 C 0.04 0.32 6.87 71.98 0.49 0.81 16 26 O -0.58 -5.95 10.49 -148.98 -1.56 -7.51 16 27 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 28 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 29 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 30 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 31 H 0.10 3.95 7.93 -2.39 -0.02 3.93 16 32 H 0.08 1.86 7.73 -2.39 -0.02 1.84 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.11 1.59 5.96 -2.39 -0.01 1.58 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.05 2.04 5.50 -2.39 -0.01 2.03 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 40 H 0.04 0.65 6.75 -2.39 -0.02 0.63 16 41 H 0.09 1.20 8.00 -2.39 -0.02 1.18 16 42 H 0.11 0.84 8.06 -2.39 -0.02 0.82 16 43 H 0.09 0.99 6.14 -2.39 -0.01 0.98 16 44 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.05 0.41 6.24 -2.39 -0.01 0.39 16 46 H 0.39 1.20 9.12 -74.05 -0.68 0.53 16 Total: -1.00 -81.48 348.28 -1.14 -82.62 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.30 Total: 11.40 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.36 Total: -5.49 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -6.22 Total: -97.25 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.61 Total: -38.80 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -81.48 -1.14 -82.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889758023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.312 kcal (2) G-P(sol) polarization free energy of solvation -81.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds