Wall clock time and date at job start Tue Mar 31 2020 03:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99800 * 2 1 4 4 H 1.48503 * 109.46893 * 270.00020 * 3 2 1 5 5 H 1.48497 * 109.47038 * 29.99789 * 3 2 1 6 6 H 1.48497 * 109.47210 * 149.99817 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99624 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47371 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47371 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99709 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99876 * 180.02562 * 11 10 9 14 14 C 1.48188 * 126.42502 * 0.02562 * 13 11 10 15 15 C 1.55338 * 107.02701 * 174.90028 * 14 13 11 16 16 C 1.53573 * 101.79197 * 337.56467 * 15 14 13 17 17 H 1.08999 * 110.89446 * 281.80953 * 16 15 14 18 18 C 1.45449 * 126.41823 * 179.97438 * 13 11 10 19 19 H 1.09001 * 109.52267 * 94.53199 * 18 13 11 20 20 C 1.51618 * 117.45022 * 328.80678 * 18 13 11 21 21 C 1.53891 * 106.97932 * 181.13914 * 20 18 13 22 22 C 1.52596 * 111.19156 * 55.01149 * 21 20 18 23 23 N 1.45477 * 115.88995 * 153.69287 * 16 15 14 24 24 C 1.46901 * 110.90374 * 60.31695 * 23 16 15 25 25 C 1.53000 * 109.47085 * 187.10933 * 24 23 16 26 26 O 1.42901 * 109.47149 * 65.00359 * 25 24 23 27 27 H 0.97001 * 120.00366 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46888 * 59.99745 * 9 7 2 29 29 H 1.09001 * 109.47081 * 300.00195 * 9 7 2 30 30 H 1.09007 * 109.46748 * 59.99810 * 10 9 7 31 31 H 1.09004 * 109.46830 * 300.00495 * 10 9 7 32 32 H 1.09006 * 109.91789 * 294.23744 * 14 13 11 33 33 H 1.09001 * 109.92640 * 55.34625 * 14 13 11 34 34 H 1.08995 * 110.96619 * 95.69694 * 15 14 13 35 35 H 1.09007 * 110.96325 * 219.44456 * 15 14 13 36 36 H 1.09004 * 109.94718 * 61.77527 * 20 18 13 37 37 H 1.09002 * 110.02535 * 300.55446 * 20 18 13 38 38 H 1.09001 * 109.13335 * 294.56847 * 21 20 18 39 39 H 1.08997 * 109.13087 * 175.44852 * 21 20 18 40 40 H 1.09002 * 109.03060 * 66.90731 * 22 21 20 41 41 H 1.09006 * 109.02691 * 185.82513 * 22 21 20 42 42 H 1.08999 * 109.46764 * 307.10871 * 24 23 16 43 43 H 1.08999 * 109.46711 * 67.10823 * 24 23 16 44 44 H 1.09001 * 109.46799 * 184.99773 * 25 24 23 45 45 H 1.08992 * 109.47221 * 304.99965 * 25 24 23 46 46 H 0.96703 * 113.99815 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0021 13 7 2.1658 -6.1343 0.0018 14 6 3.6384 -6.3000 0.0025 15 6 3.9248 -7.8210 0.1351 16 6 2.6225 -8.3316 0.7690 17 1 2.5994 -8.1156 1.8371 18 6 1.5840 -7.4674 0.0030 19 1 1.5123 -7.8344 -1.0209 20 6 0.2498 -7.6470 0.7004 21 6 -0.1224 -9.1355 0.5819 22 6 0.9879 -10.0271 1.1303 23 7 2.2900 -9.7228 0.5041 24 6 3.3387 -10.6181 1.0108 25 6 3.0464 -12.0513 0.5620 26 8 3.1359 -12.1322 -0.8619 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8906 31 1 2.8720 -3.6042 -0.8895 32 1 4.0548 -5.9237 -0.9320 33 1 4.0723 -5.7623 0.8455 34 1 4.0864 -8.2741 -0.8429 35 1 4.7755 -8.0018 0.7923 36 1 -0.5094 -7.0340 0.2146 37 1 0.3369 -7.3678 1.7505 38 1 -0.2912 -9.3792 -0.4670 39 1 -1.0387 -9.3204 1.1425 40 1 1.0663 -9.8757 2.2069 41 1 0.7354 -11.0695 0.9356 42 1 4.3055 -10.3042 0.6175 43 1 3.3580 -10.5751 2.0997 44 1 3.7737 -12.7279 1.0107 45 1 2.0429 -12.3340 0.8796 46 1 2.9624 -13.0146 -1.2174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889758025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:48 Heat of formation + Delta-G solvation = -82.381514 kcal Electronic energy + Delta-G solvation = -24836.251317 eV Core-core repulsion = 21339.474158 eV Total energy + Delta-G solvation = -3496.777159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70957 -38.57680 -37.12648 -35.74872 -33.81828 -33.35349 -31.38176 -30.52745 -28.98033 -28.60104 -25.78190 -24.35520 -23.40309 -22.13384 -21.48233 -20.78750 -20.07332 -18.34677 -17.74161 -16.91366 -16.38265 -15.74583 -15.58797 -15.47960 -15.02229 -14.47962 -14.41410 -14.38311 -14.05908 -13.65529 -13.44785 -13.29620 -12.91771 -12.62079 -12.30398 -12.22655 -12.07108 -11.80070 -11.53461 -11.43274 -11.09884 -11.02266 -10.91825 -10.85150 -10.80857 -10.56895 -10.31212 -10.15892 -9.90603 -9.59004 -9.09864 -8.87704 -8.59054 -8.32322 -8.25756 -5.93164 -3.97347 3.17906 3.30732 3.35277 3.41185 3.43932 3.69542 3.96755 4.26972 4.50004 4.51714 4.73914 4.75845 4.84012 4.90738 5.02262 5.05949 5.11518 5.21085 5.26027 5.28285 5.40706 5.41698 5.48688 5.58129 5.62787 5.68136 5.73012 5.75130 5.88512 5.98757 6.00347 6.25371 6.28300 6.36867 6.43061 6.65807 6.78778 6.90440 6.98506 7.37079 7.77852 7.90609 7.95874 8.10916 8.42339 8.83422 9.11300 9.65924 11.17843 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.002953 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.494367 B = 9478.053336 C =10037.904904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.529 6.529 13 N -0.625 5.625 14 C 0.107 3.893 15 C -0.121 4.121 16 C 0.057 3.943 17 H 0.055 0.945 18 C 0.144 3.856 19 H 0.075 0.925 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.048 3.952 23 N -0.503 5.503 24 C 0.049 3.951 25 C 0.080 3.920 26 O -0.557 6.557 27 H 0.261 0.739 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 -26.622 2.702 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.164 4.164 11 C 0.320 3.680 12 O -0.404 6.404 13 N -0.362 5.362 14 C -0.016 4.016 15 C -0.159 4.159 16 C -0.053 4.053 17 H 0.073 0.927 18 C 0.039 3.961 19 H 0.093 0.907 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.079 4.079 23 N -0.227 5.227 24 C -0.079 4.079 25 C 0.002 3.998 26 O -0.361 6.361 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.342 -25.827 2.246 26.944 hybrid contribution 0.526 0.356 0.944 1.137 sum 7.868 -25.472 3.190 26.849 Atomic orbital electron populations 1.69999 1.06048 1.26539 1.50287 1.25024 0.94819 0.99198 0.95355 0.86596 0.79765 0.83550 0.78065 1.20665 1.21242 1.19906 1.21223 0.92911 0.91025 1.51257 0.92646 1.18900 0.93175 0.89344 0.98585 1.21845 1.00627 0.91692 1.02262 1.21267 0.88111 0.84303 0.74348 1.90641 1.14138 1.86752 1.48911 1.48445 1.06832 1.05169 1.75791 1.22327 0.81194 0.95819 1.02290 1.22521 0.96568 0.94488 1.02325 1.22620 0.96205 0.88556 0.97920 0.92698 1.21206 0.93358 0.82114 0.99421 0.90734 1.21661 0.97562 0.95786 1.00873 1.21591 0.97096 0.94289 1.02221 1.22264 0.89575 1.00019 0.96058 1.62530 1.01898 1.01583 1.56702 1.22201 0.96471 0.92081 0.97135 1.22192 0.99383 0.96077 0.82157 1.86627 1.94182 1.35136 1.20191 0.92975 0.95820 0.95862 0.90479 0.90373 0.90951 0.91056 0.89436 0.90441 0.89086 0.92124 0.91106 0.91099 0.95001 0.90617 0.89577 0.93480 0.93583 0.93659 0.78109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.12 -2.65 4.89 -27.88 -0.14 -2.79 16 11 C 0.53 10.86 7.77 -10.99 -0.09 10.77 16 12 O -0.53 -12.80 14.20 5.56 0.08 -12.72 16 13 N -0.63 -10.05 3.28 -163.47 -0.54 -10.59 16 14 C 0.11 1.29 6.62 -1.87 -0.01 1.28 16 15 C -0.12 -1.20 5.63 -25.19 -0.14 -1.34 16 16 C 0.06 0.64 2.11 -66.96 -0.14 0.50 16 17 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 18 C 0.14 2.07 2.64 -67.97 -0.18 1.89 16 19 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 20 C -0.12 -1.74 5.03 -26.97 -0.14 -1.88 16 21 C -0.11 -1.25 5.99 -26.47 -0.16 -1.40 16 22 C 0.05 0.46 5.16 -3.62 -0.02 0.44 16 23 N -0.50 -5.15 4.65 -225.53 -1.05 -6.20 16 24 C 0.05 0.40 5.20 -3.82 -0.02 0.38 16 25 C 0.08 0.54 7.11 37.16 0.26 0.81 16 26 O -0.56 -4.64 13.61 -35.23 -0.48 -5.12 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.61 8.13 -51.92 -0.42 0.19 16 36 H 0.09 1.58 6.67 -51.93 -0.35 1.23 16 37 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.08 0.62 6.25 -51.93 -0.32 0.30 16 42 H 0.09 0.71 7.18 -51.93 -0.37 0.34 16 43 H 0.05 0.34 8.12 -51.93 -0.42 -0.09 16 44 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.05 0.28 6.28 -51.93 -0.33 -0.05 16 46 H 0.37 1.45 9.12 45.56 0.42 1.87 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -35.43 358.46 -9.41 -44.84 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.25 Total: -1.12 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.30 Total: -4.32 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.85 Total: -43.87 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.40 Total: -17.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.43 -9.41 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889758025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.540 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds