Wall clock time and date at job start Tue Mar 31 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.63935 * 34.30357 * 10 9 7 12 12 C 1.55154 * 110.72337 * 271.15654 * 10 9 7 13 13 C 1.54903 * 101.58327 * 206.13686 * 12 10 9 14 14 N 1.47434 * 104.83281 * 37.00890 * 13 12 10 15 15 C 1.34776 * 125.64870 * 155.90418 * 14 13 12 16 16 O 1.21279 * 119.99830 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99878 * 359.97438 * 15 14 13 18 18 C 1.53002 * 109.47029 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47168 * 179.97438 * 18 17 15 20 20 C 1.53178 * 109.54612 * 294.55942 * 19 18 17 21 21 C 1.53092 * 109.16412 * 183.15347 * 20 19 18 22 22 O 1.42899 * 109.41531 * 57.61080 * 21 20 19 23 23 C 1.42903 * 114.09569 * 298.83869 * 22 21 20 24 24 C 1.53091 * 109.41481 * 61.16208 * 23 22 21 25 25 C 1.47315 * 108.73285 * 335.71665 * 14 13 12 26 26 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 28 28 H 1.09003 * 111.00299 * 324.20707 * 12 10 9 29 29 H 1.08998 * 111.00366 * 88.05693 * 12 10 9 30 30 H 1.08999 * 110.36980 * 155.84282 * 13 12 10 31 31 H 1.09003 * 110.36802 * 278.06063 * 13 12 10 32 32 H 1.08998 * 109.47381 * 299.99973 * 17 15 14 33 33 H 1.09002 * 109.47269 * 60.00306 * 17 15 14 34 34 H 1.08998 * 109.47447 * 300.00459 * 18 17 15 35 35 H 1.09002 * 109.46416 * 60.00309 * 18 17 15 36 36 H 1.09003 * 109.54301 * 54.82566 * 19 18 17 37 37 H 1.08999 * 109.52303 * 303.06130 * 20 19 18 38 38 H 1.09003 * 109.52096 * 63.24541 * 20 19 18 39 39 H 1.09004 * 109.47989 * 297.62260 * 21 20 19 40 40 H 1.09000 * 109.47685 * 177.59202 * 21 20 19 41 41 H 1.08995 * 109.48414 * 301.17776 * 23 22 21 42 42 H 1.09000 * 109.48965 * 181.14980 * 23 22 21 43 43 H 1.08996 * 109.52644 * 182.48731 * 24 23 22 44 44 H 1.09001 * 109.52539 * 62.29060 * 24 23 22 45 45 H 1.08999 * 110.06447 * 241.86883 * 25 14 13 46 46 H 1.09001 * 109.84779 * 120.61374 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9799 -3.5682 0.5754 12 6 2.3580 -4.1176 -1.4503 13 6 2.4680 -5.6525 -1.2727 14 7 1.4456 -5.9901 -0.2656 15 6 0.8570 -7.1934 -0.1166 16 8 0.0252 -7.3583 0.7504 17 6 1.2325 -8.3338 -1.0274 18 6 0.4251 -9.5767 -0.6478 19 6 0.8059 -10.7344 -1.5728 20 6 0.3766 -10.4073 -3.0064 21 6 0.6900 -11.6027 -3.9100 22 8 0.0205 -12.7629 -3.4122 23 6 0.4169 -13.1443 -2.0932 24 6 0.0924 -12.0108 -1.1166 25 6 1.1767 -4.7961 0.5543 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 0.0005 28 1 1.5373 -3.8596 -2.1197 29 1 3.2981 -3.6971 -1.8073 30 1 2.2553 -6.1595 -2.2138 31 1 3.4609 -5.9226 -0.9130 32 1 1.0157 -8.0606 -2.0601 33 1 2.2965 -8.5465 -0.9236 34 1 0.6423 -9.8498 0.3848 35 1 -0.6390 -9.3642 -0.7513 36 1 1.8845 -10.8878 -1.5399 37 1 -0.6942 -10.2047 -3.0288 38 1 0.9214 -9.5315 -3.3589 39 1 1.7656 -11.7794 -3.9190 40 1 0.3476 -11.3921 -4.9232 41 1 1.4888 -13.3412 -2.0784 42 1 -0.1221 -14.0443 -1.7975 43 1 0.4341 -12.2817 -0.1177 44 1 -0.9841 -11.8405 -1.1008 45 1 1.4342 -4.9915 1.5953 46 1 0.1245 -4.5225 0.4757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970173125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:07 Heat of formation + Delta-G solvation = -88.302744 kcal Electronic energy + Delta-G solvation = -23879.396396 eV Core-core repulsion = 20382.362473 eV Total energy + Delta-G solvation = -3497.033923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08083 -39.49847 -37.40994 -35.59581 -34.14149 -31.86526 -31.44619 -30.97190 -29.53405 -27.98046 -26.01201 -23.93701 -23.70611 -22.86753 -21.95719 -20.31326 -20.04444 -18.95926 -17.42457 -17.05434 -16.38077 -16.27433 -16.09102 -15.43450 -15.18693 -14.94897 -14.59956 -14.25243 -14.09315 -13.54182 -13.32295 -13.24543 -12.76024 -12.62967 -12.54374 -12.27017 -12.11222 -11.85268 -11.67553 -11.65714 -11.43001 -11.20375 -11.05385 -10.85825 -10.73561 -10.61871 -10.57125 -10.36164 -10.13622 -9.82956 -9.79263 -9.61480 -8.99082 -8.41054 -7.07423 -5.84315 -3.15274 2.79320 3.14937 3.39502 3.44186 3.45400 3.56031 4.31116 4.36859 4.46988 4.52361 4.67262 4.71883 4.84515 4.94512 5.01679 5.05373 5.08922 5.18030 5.26078 5.31579 5.35388 5.38059 5.42383 5.51564 5.54587 5.57422 5.60711 5.71261 5.73956 5.79562 5.85946 5.94542 6.03769 6.11661 6.17163 6.23691 6.35186 6.55347 6.58355 6.86631 6.87284 7.61952 7.74104 8.32089 8.34410 9.44248 9.98554 10.33233 11.37777 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039910 B = 0.002348 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.405215 B =11920.830857 C =12171.486450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.065 0.935 12 C -0.155 4.155 13 C 0.099 3.901 14 N -0.615 5.615 15 C 0.522 3.478 16 O -0.548 6.548 17 C -0.136 4.136 18 C -0.097 4.097 19 C -0.090 4.090 20 C -0.155 4.155 21 C 0.060 3.940 22 O -0.385 6.385 23 C 0.060 3.940 24 C -0.152 4.152 25 C 0.100 3.900 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.952 -24.223 -6.411 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.196 4.196 13 C -0.024 4.024 14 N -0.349 5.349 15 C 0.311 3.689 16 O -0.426 6.426 17 C -0.175 4.175 18 C -0.135 4.135 19 C -0.108 4.108 20 C -0.192 4.192 21 C -0.017 4.017 22 O -0.304 6.304 23 C -0.016 4.016 24 C -0.189 4.189 25 C -0.023 4.023 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.428 -24.300 -6.020 25.423 hybrid contribution 0.450 1.239 0.078 1.320 sum 4.878 -23.062 -5.942 24.309 Atomic orbital electron populations 1.69654 1.05175 1.26039 1.56872 1.24786 0.95533 0.97850 1.02504 0.86237 0.78516 0.83329 0.77879 1.21182 1.21650 1.21153 1.19167 0.91013 0.83826 1.43721 0.91008 1.42365 1.05809 0.99379 1.88077 1.21186 0.94343 0.85731 0.92791 0.91741 1.23565 1.02712 0.91681 1.01679 1.22381 0.91082 0.97817 0.91147 1.48620 1.41033 1.10488 1.34756 1.20351 0.80991 0.82592 0.84987 1.90694 1.33454 1.82748 1.35695 1.21687 1.02006 0.93892 0.99955 1.21368 1.00583 0.92118 0.99419 1.21236 1.00032 0.94842 0.94732 1.22331 1.02904 0.98694 0.95313 1.22595 0.96413 0.85044 0.97609 1.87932 1.65897 1.45627 1.30958 1.22581 0.99404 0.97118 0.82520 1.22244 1.01928 0.95245 0.99513 1.22359 1.01120 0.84435 0.94409 0.93270 0.77941 0.90655 0.90551 0.91388 0.91690 0.88994 0.89219 0.91031 0.90993 0.91002 0.90765 0.90566 0.93274 0.88926 0.93306 0.88986 0.90725 0.90799 0.91704 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.40 5.24 -51.65 -0.27 -17.67 16 10 C 0.17 3.24 3.59 -66.09 -0.24 3.01 16 11 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 12 C -0.16 -2.45 6.77 -24.59 -0.17 -2.62 16 13 C 0.10 1.23 6.69 -2.53 -0.02 1.21 16 14 N -0.61 -9.34 3.33 -170.28 -0.57 -9.91 16 15 C 0.52 7.87 7.85 -10.98 -0.09 7.78 16 16 O -0.55 -10.39 16.31 5.56 0.09 -10.30 16 17 C -0.14 -1.37 4.47 -27.88 -0.12 -1.49 16 18 C -0.10 -0.95 3.98 -26.73 -0.11 -1.06 16 19 C -0.09 -0.69 2.27 -90.44 -0.21 -0.89 16 20 C -0.15 -1.15 5.10 -26.59 -0.14 -1.28 16 21 C 0.06 0.44 6.84 37.21 0.25 0.69 16 22 O -0.39 -3.60 10.77 -35.23 -0.38 -3.98 16 23 C 0.06 0.44 6.84 37.20 0.25 0.69 16 24 C -0.15 -1.12 5.42 -26.59 -0.14 -1.27 16 25 C 0.10 1.79 6.64 -2.90 -0.02 1.77 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.39 10.14 7.53 -40.82 -0.31 9.83 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.81 6.36 -51.93 -0.33 0.48 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.49 6.75 -51.93 -0.35 0.14 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -32.03 363.64 -9.01 -41.04 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.08 Total: 6.05 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.98 Total: -0.59 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.11 Total: -54.52 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.29 Total: -14.29 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.03 -9.01 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970173125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.262 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds