Wall clock time and date at job start Tue Mar 31 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.63935 * 34.30357 * 10 9 7 12 12 C 1.55154 * 110.72337 * 271.15654 * 10 9 7 13 13 C 1.54903 * 101.58327 * 206.13686 * 12 10 9 14 14 N 1.47434 * 104.83281 * 37.00890 * 13 12 10 15 15 C 1.34776 * 125.64870 * 155.90418 * 14 13 12 16 16 O 1.21279 * 119.99830 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99878 * 359.97438 * 15 14 13 18 18 C 1.53002 * 109.47029 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47168 * 179.97438 * 18 17 15 20 20 C 1.53178 * 109.54612 * 294.55942 * 19 18 17 21 21 C 1.53092 * 109.16412 * 183.15347 * 20 19 18 22 22 O 1.42899 * 109.41531 * 57.61080 * 21 20 19 23 23 C 1.42903 * 114.09569 * 298.83869 * 22 21 20 24 24 C 1.53091 * 109.41481 * 61.16208 * 23 22 21 25 25 C 1.47315 * 108.73285 * 335.71665 * 14 13 12 26 26 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 28 28 H 1.09003 * 111.00299 * 324.20707 * 12 10 9 29 29 H 1.08998 * 111.00366 * 88.05693 * 12 10 9 30 30 H 1.08999 * 110.36980 * 155.84282 * 13 12 10 31 31 H 1.09003 * 110.36802 * 278.06063 * 13 12 10 32 32 H 1.08998 * 109.47381 * 299.99973 * 17 15 14 33 33 H 1.09002 * 109.47269 * 60.00306 * 17 15 14 34 34 H 1.08998 * 109.47447 * 300.00459 * 18 17 15 35 35 H 1.09002 * 109.46416 * 60.00309 * 18 17 15 36 36 H 1.09003 * 109.54301 * 54.82566 * 19 18 17 37 37 H 1.08999 * 109.52303 * 303.06130 * 20 19 18 38 38 H 1.09003 * 109.52096 * 63.24541 * 20 19 18 39 39 H 1.09004 * 109.47989 * 297.62260 * 21 20 19 40 40 H 1.09000 * 109.47685 * 177.59202 * 21 20 19 41 41 H 1.08995 * 109.48414 * 301.17776 * 23 22 21 42 42 H 1.09000 * 109.48965 * 181.14980 * 23 22 21 43 43 H 1.08996 * 109.52644 * 182.48731 * 24 23 22 44 44 H 1.09001 * 109.52539 * 62.29060 * 24 23 22 45 45 H 1.08999 * 110.06447 * 241.86883 * 25 14 13 46 46 H 1.09001 * 109.84779 * 120.61374 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9799 -3.5682 0.5754 12 6 2.3580 -4.1176 -1.4503 13 6 2.4680 -5.6525 -1.2727 14 7 1.4456 -5.9901 -0.2656 15 6 0.8570 -7.1934 -0.1166 16 8 0.0252 -7.3583 0.7504 17 6 1.2325 -8.3338 -1.0274 18 6 0.4251 -9.5767 -0.6478 19 6 0.8059 -10.7344 -1.5728 20 6 0.3766 -10.4073 -3.0064 21 6 0.6900 -11.6027 -3.9100 22 8 0.0205 -12.7629 -3.4122 23 6 0.4169 -13.1443 -2.0932 24 6 0.0924 -12.0108 -1.1166 25 6 1.1767 -4.7961 0.5543 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 0.0005 28 1 1.5373 -3.8596 -2.1197 29 1 3.2981 -3.6971 -1.8073 30 1 2.2553 -6.1595 -2.2138 31 1 3.4609 -5.9226 -0.9130 32 1 1.0157 -8.0606 -2.0601 33 1 2.2965 -8.5465 -0.9236 34 1 0.6423 -9.8498 0.3848 35 1 -0.6390 -9.3642 -0.7513 36 1 1.8845 -10.8878 -1.5399 37 1 -0.6942 -10.2047 -3.0288 38 1 0.9214 -9.5315 -3.3589 39 1 1.7656 -11.7794 -3.9190 40 1 0.3476 -11.3921 -4.9232 41 1 1.4888 -13.3412 -2.0784 42 1 -0.1221 -14.0443 -1.7975 43 1 0.4341 -12.2817 -0.1177 44 1 -0.9841 -11.8405 -1.1008 45 1 1.4342 -4.9915 1.5953 46 1 0.1245 -4.5225 0.4757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970173125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:07 Heat of formation + Delta-G solvation = -109.388029 kcal Electronic energy + Delta-G solvation = -23880.310722 eV Core-core repulsion = 20382.362473 eV Total energy + Delta-G solvation = -3497.948250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15094 -40.26140 -38.74976 -36.34464 -35.91550 -33.40729 -32.24966 -31.81283 -30.94324 -29.41596 -26.96828 -25.48613 -24.46602 -24.10127 -22.78207 -21.55887 -20.89606 -20.10066 -19.34738 -18.14596 -17.42786 -16.95901 -16.92755 -16.61309 -16.44114 -15.93068 -15.54735 -15.46558 -15.25406 -14.86411 -14.73133 -14.33416 -13.96670 -13.77768 -13.37240 -13.16361 -13.10533 -13.06803 -12.96821 -12.85451 -12.63693 -12.37491 -12.24213 -12.16415 -12.10485 -11.75960 -11.73603 -11.68038 -11.23003 -11.13595 -10.93374 -10.89158 -10.39501 -9.67833 -9.05736 -7.95472 -5.26196 1.48754 1.51883 1.57848 1.63198 1.97198 2.56872 3.04011 3.35427 3.49121 3.71594 3.76689 3.79525 3.85102 3.98561 4.09003 4.12706 4.26168 4.27641 4.29803 4.42034 4.43785 4.52069 4.52989 4.61362 4.64881 4.74158 4.82639 4.85343 4.87200 4.91111 4.96018 5.00253 5.09832 5.16649 5.20968 5.23885 5.28140 5.33699 5.44771 5.51808 5.52876 6.24660 6.33541 6.57549 7.15178 7.30821 8.02917 8.26511 9.27932 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039910 B = 0.002348 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.405215 B =11920.830857 C =12171.486450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.977 3.023 4 H -0.274 1.274 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.733 5.733 10 C 0.164 3.836 11 H 0.071 0.929 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.616 5.616 15 C 0.514 3.486 16 O -0.597 6.597 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.082 4.082 20 C -0.154 4.154 21 C 0.056 3.944 22 O -0.410 6.410 23 C 0.059 3.941 24 C -0.152 4.152 25 C 0.108 3.892 26 H 0.251 0.749 27 H 0.371 0.629 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 -25.738 -7.892 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.372 5.372 10 C 0.055 3.945 11 H 0.089 0.911 12 C -0.187 4.187 13 C -0.015 4.015 14 N -0.350 5.350 15 C 0.306 3.694 16 O -0.478 6.478 17 C -0.163 4.163 18 C -0.130 4.130 19 C -0.101 4.101 20 C -0.191 4.191 21 C -0.020 4.020 22 O -0.330 6.330 23 C -0.018 4.018 24 C -0.190 4.190 25 C -0.017 4.017 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.555 -25.865 -7.529 27.978 hybrid contribution -0.506 1.618 0.577 1.791 sum 7.049 -24.247 -6.952 26.191 Atomic orbital electron populations 1.69832 1.06857 1.26195 1.59406 1.25636 0.96333 1.01383 1.03660 0.85168 0.77090 0.78874 0.78349 1.19933 1.22687 1.20328 1.19612 0.91681 0.84679 1.41172 0.89748 1.42566 1.05325 1.00835 1.88493 1.21406 0.93930 0.83921 0.95272 0.91128 1.23367 1.02532 0.94530 0.98281 1.22560 0.91689 0.95147 0.92118 1.48738 1.41706 1.09686 1.34847 1.21363 0.79887 0.83287 0.84910 1.90676 1.35605 1.83547 1.38014 1.21746 1.03755 0.91307 0.99448 1.21299 0.99198 0.93123 0.99427 1.21188 1.01068 0.93643 0.94181 1.22329 1.02051 0.99516 0.95232 1.22726 0.97204 0.84285 0.97766 1.87901 1.66750 1.46461 1.31880 1.22685 1.00386 0.97091 0.81598 1.22243 1.00945 0.95619 1.00196 1.22029 0.99098 0.85750 0.94801 0.94075 0.79749 0.92697 0.89119 0.87746 0.88561 0.86761 0.85898 0.92280 0.93473 0.89019 0.92549 0.88931 0.91709 0.88331 0.91832 0.88355 0.89940 0.92513 0.92318 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.98 45.14 29.55 68.60 2.03 47.16 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -12.84 9.97 84.04 0.84 -12.00 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.73 -36.21 5.24 -317.32 -1.66 -37.87 16 10 C 0.16 6.12 3.59 46.18 0.17 6.29 16 11 H 0.07 2.55 8.11 -2.39 -0.02 2.53 16 12 C -0.15 -4.29 6.77 31.98 0.22 -4.07 16 13 C 0.11 2.20 6.69 86.85 0.58 2.78 16 14 N -0.62 -17.62 3.33 -811.03 -2.70 -20.32 16 15 C 0.51 14.78 7.85 87.66 0.69 15.47 16 16 O -0.60 -23.04 16.31 -3.03 -0.05 -23.09 16 17 C -0.12 -2.08 4.47 29.85 0.13 -1.94 16 18 C -0.09 -1.68 3.98 30.59 0.12 -1.56 16 19 C -0.08 -1.05 2.27 -10.67 -0.02 -1.07 16 20 C -0.15 -1.90 5.10 30.68 0.16 -1.74 16 21 C 0.06 0.68 6.84 72.01 0.49 1.18 16 22 O -0.41 -7.02 10.77 -148.98 -1.60 -8.62 16 23 C 0.06 0.74 6.84 72.01 0.49 1.23 16 24 C -0.15 -2.06 5.42 30.69 0.17 -1.89 16 25 C 0.11 3.89 6.64 86.67 0.58 4.47 16 26 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.37 20.31 7.53 -92.71 -0.70 19.61 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.10 1.50 7.48 -2.39 -0.02 1.48 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 1.48 6.36 -2.39 -0.02 1.47 16 33 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.83 6.75 -2.39 -0.02 0.81 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.04 1.66 7.70 -2.39 -0.02 1.64 16 Total: -1.00 -72.65 363.64 1.61 -71.04 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.25 Total: 27.78 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.07 Total: 3.20 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -4.08 Total: -117.48 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.65 Total: -31.71 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.65 1.61 -71.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970173125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.351 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds