Wall clock time and date at job start Tue Mar 31 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46814 * 2 1 4 4 N 1.46496 * 109.47060 * 119.99787 * 2 1 3 5 5 C 1.34783 * 119.99948 * 274.99661 * 4 2 1 6 6 O 1.21282 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99964 * 180.02562 * 5 4 2 8 8 H 1.09003 * 110.60309 * 42.78287 * 7 5 4 9 9 C 1.54106 * 110.55156 * 280.00556 * 7 5 4 10 10 N 1.47054 * 103.86027 * 241.40827 * 9 7 5 11 11 C 1.46503 * 125.40478 * 180.02562 * 10 9 7 12 12 C 1.33941 * 109.18235 * 359.97438 * 10 9 7 13 13 O 1.21586 * 123.04496 * 179.97438 * 12 10 9 14 14 N 1.33950 * 113.91519 * 0.02562 * 12 10 9 15 15 C 1.53002 * 109.47159 * 239.99996 * 2 1 3 16 16 C 1.53941 * 113.73940 * 156.67514 * 15 2 1 17 17 N 1.47587 * 86.11301 * 222.04634 * 16 15 2 18 18 C 1.36943 * 134.48692 * 204.64181 * 17 16 15 19 19 H 1.08003 * 119.99256 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00675 * 359.97438 * 18 17 16 21 21 N 1.31621 * 119.99532 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00374 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47093 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47090 * 119.99763 * 22 20 18 25 25 H 1.48497 * 109.47117 * 240.00294 * 22 20 18 26 26 C 1.47577 * 91.01576 * 24.64171 * 17 16 15 27 27 H 1.08998 * 109.46814 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47229 * 299.99661 * 1 2 3 29 29 H 1.08999 * 109.47124 * 60.00589 * 1 2 3 30 30 H 0.96994 * 120.00208 * 95.00449 * 4 2 1 31 31 H 1.08998 * 110.54738 * 0.02562 * 9 7 5 32 32 H 1.09000 * 110.54792 * 122.66257 * 9 7 5 33 33 H 1.09005 * 109.46715 * 89.99952 * 11 10 9 34 34 H 1.09003 * 109.46652 * 209.99292 * 11 10 9 35 35 H 1.08994 * 109.47270 * 329.99603 * 11 10 9 36 36 H 0.97005 * 125.40940 * 179.97438 * 14 12 10 37 37 H 1.09001 * 112.93943 * 288.40303 * 15 2 1 38 38 H 1.09003 * 113.76932 * 336.34089 * 16 15 2 39 39 H 1.08998 * 113.77316 * 107.74848 * 16 15 2 40 40 H 0.97001 * 120.00153 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.76535 * 221.06296 * 26 17 16 42 42 H 1.08996 * 113.77128 * 89.66415 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1586 2.4116 7 6 2.6500 -0.7283 3.5875 8 1 3.4904 -1.3766 3.3395 9 6 1.5167 -1.5395 4.2450 10 7 1.3833 -0.9396 5.5810 11 6 0.4289 -1.3613 6.6094 12 6 2.2737 0.0529 5.7086 13 8 2.3805 0.7220 6.7181 14 7 3.0350 0.2423 4.6229 15 6 2.0400 -0.7213 -1.2493 16 6 3.4666 -0.3145 -1.6607 17 7 2.9583 -0.3120 -3.0463 18 6 3.5329 -0.4678 -4.2795 19 1 2.9224 -0.4220 -5.1693 20 6 4.9000 -0.6836 -4.3861 21 7 5.6440 -0.7389 -3.3018 22 14 5.6838 -0.8955 -6.0684 23 1 4.6385 -0.7914 -7.1182 24 1 6.7017 0.1653 -6.2773 25 1 6.3341 -2.2282 -6.1472 26 6 1.5823 -0.0740 -2.5689 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 2.2491 -1.6316 1.1527 31 1 0.5903 -1.4290 3.6814 32 1 1.7933 -2.5911 4.3212 33 1 0.8831 -2.1318 7.2324 34 1 0.1600 -0.5053 7.2283 35 1 -0.4663 -1.7604 6.1325 36 1 3.7299 0.9132 4.5338 37 1 1.8829 -1.7992 -1.2114 38 1 3.7640 0.6702 -1.3001 39 1 4.2152 -1.0832 -1.4688 40 1 6.5993 -0.8893 -3.3762 41 1 0.8265 -0.6507 -3.1020 42 1 1.3262 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970272681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:26 Heat of formation + Delta-G solvation = 11.762188 kcal Electronic energy + Delta-G solvation = -24134.981280 eV Core-core repulsion = 20538.746155 eV Total energy + Delta-G solvation = -3596.235125 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53954 -39.60651 -38.13495 -36.38590 -34.97485 -34.28136 -32.31416 -30.94678 -29.27227 -27.58630 -27.41320 -25.02598 -24.32315 -23.74730 -21.51927 -20.77057 -20.48961 -19.25544 -17.92984 -17.62530 -16.88937 -16.57807 -16.08658 -15.67197 -15.08763 -14.92124 -14.62180 -14.29604 -14.05318 -13.87892 -13.69622 -13.56271 -13.31371 -12.83537 -12.65270 -12.51161 -12.36954 -12.08094 -11.74302 -11.40144 -11.35822 -10.96132 -10.78089 -10.46664 -10.41979 -10.26370 -9.93104 -9.82931 -9.51399 -9.38563 -8.95191 -8.86484 -8.83229 -6.92059 -5.81260 -3.13482 2.21093 2.52165 2.77727 3.14066 3.35663 3.41296 3.43669 3.67951 3.97849 4.39519 4.41778 4.49985 4.73715 4.95274 5.01505 5.09297 5.19538 5.21619 5.25617 5.39556 5.47614 5.57144 5.61177 5.71317 5.86257 5.94337 6.15608 6.27877 6.32795 6.36565 6.49516 6.58121 6.70799 6.88285 7.17767 7.20232 7.30245 7.47752 7.51455 7.94126 8.13859 8.38499 9.00760 9.66791 10.55370 11.35820 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002968 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.274501 B = 9432.739567 C = 9900.017311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.711 5.711 5 C 0.501 3.499 6 O -0.525 6.525 7 C 0.102 3.898 8 H 0.119 0.881 9 C 0.107 3.893 10 N -0.638 5.638 11 C 0.122 3.878 12 C 0.705 3.295 13 O -0.584 6.584 14 N -0.714 5.714 15 C -0.146 4.146 16 C 0.170 3.830 17 N -0.613 5.613 18 C -0.223 4.223 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.130 3.870 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.401 0.599 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.435 0.565 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -6.271 15.225 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.362 5.362 5 C 0.284 3.716 6 O -0.400 6.400 7 C -0.009 4.009 8 H 0.137 0.863 9 C -0.018 4.018 10 N -0.378 5.378 11 C -0.020 4.020 12 C 0.405 3.595 13 O -0.462 6.462 14 N -0.375 5.375 15 C -0.166 4.166 16 C 0.045 3.955 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.003 3.997 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.235 0.765 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.278 0.722 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.315 -5.175 15.661 19.453 hybrid contribution 0.963 -0.232 -1.247 1.593 sum -9.351 -5.407 14.413 18.012 Atomic orbital electron populations 1.22130 0.95569 1.01787 1.02179 1.21143 0.93526 0.97640 0.83139 0.89413 1.46094 1.66558 1.14155 1.09429 1.20637 0.78673 0.87766 0.84512 1.90752 1.49011 1.15606 1.84631 1.21887 0.98969 0.91235 0.88769 0.86328 1.22280 0.98159 0.97847 0.83469 1.46997 1.38714 1.36422 1.15684 1.21388 0.90443 1.00685 0.89442 1.15798 0.79459 0.80682 0.83543 1.90959 1.72802 1.51681 1.30773 1.44835 1.40520 1.38881 1.13254 1.23833 1.00976 0.99693 0.92121 1.22271 0.91655 0.98275 0.83332 1.45963 1.02469 1.83262 1.02176 1.19074 0.91102 1.41922 0.82918 0.90214 1.24783 0.95960 1.02399 0.97357 1.69821 1.05115 1.55728 1.26180 0.86052 0.79234 0.77382 0.83130 1.20461 1.21744 1.21690 1.22500 0.89748 0.96767 0.90691 0.92625 0.92887 0.91305 0.76453 0.89569 0.88702 0.92552 0.90402 0.90865 0.72222 0.89273 0.95702 0.90989 0.93716 0.93718 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.29 37.16 0.35 -1.52 16 2 C 0.15 2.05 2.42 -67.93 -0.16 1.88 16 3 H 0.09 1.45 7.37 -51.93 -0.38 1.07 16 4 N -0.71 -7.70 5.08 -53.81 -0.27 -7.98 16 5 C 0.50 5.97 6.92 -10.98 -0.08 5.90 16 6 O -0.52 -8.67 16.22 5.56 0.09 -8.58 16 7 C 0.10 0.89 4.17 -68.21 -0.28 0.61 16 8 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 9 C 0.11 0.74 7.32 -3.16 -0.02 0.71 16 10 N -0.64 -6.28 3.36 -186.73 -0.63 -6.91 16 11 C 0.12 0.87 11.03 59.85 0.66 1.53 16 12 C 0.70 9.47 8.60 -88.40 -0.76 8.71 16 13 O -0.58 -10.15 17.53 5.29 0.09 -10.06 16 14 N -0.71 -8.17 5.60 -59.33 -0.33 -8.50 16 15 C -0.15 -2.37 3.50 -89.70 -0.31 -2.69 16 16 C 0.17 3.74 7.07 -2.97 -0.02 3.72 16 17 N -0.61 -15.15 3.70 -177.93 -0.66 -15.81 16 18 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -26.69 11.38 55.49 0.63 -26.06 16 22 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.13 2.46 7.56 -2.98 -0.02 2.44 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.81 7.43 -51.93 -0.39 0.42 16 30 H 0.40 3.22 8.60 -40.82 -0.35 2.87 16 31 H 0.09 0.56 7.72 -51.93 -0.40 0.16 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.43 4.81 8.96 -40.82 -0.37 4.45 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.03 0.59 7.96 -51.93 -0.41 0.17 16 39 H 0.07 1.74 7.15 -51.93 -0.37 1.37 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -37.06 350.28 -8.17 -45.22 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.43 Total: 1.96 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -0.92 Total: 14.67 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -1.26 Total: -65.25 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.06 -8.17 -45.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970272681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.986 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds