Wall clock time and date at job start Tue Mar 31 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46814 * 2 1 4 4 N 1.46496 * 109.47060 * 119.99787 * 2 1 3 5 5 C 1.34783 * 119.99948 * 274.99661 * 4 2 1 6 6 O 1.21282 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99964 * 180.02562 * 5 4 2 8 8 H 1.09003 * 110.60309 * 42.78287 * 7 5 4 9 9 C 1.54106 * 110.55156 * 280.00556 * 7 5 4 10 10 N 1.47054 * 103.86027 * 241.40827 * 9 7 5 11 11 C 1.46503 * 125.40478 * 180.02562 * 10 9 7 12 12 C 1.33941 * 109.18235 * 359.97438 * 10 9 7 13 13 O 1.21586 * 123.04496 * 179.97438 * 12 10 9 14 14 N 1.33950 * 113.91519 * 0.02562 * 12 10 9 15 15 C 1.53002 * 109.47159 * 239.99996 * 2 1 3 16 16 C 1.53941 * 113.73940 * 156.67514 * 15 2 1 17 17 N 1.47587 * 86.11301 * 222.04634 * 16 15 2 18 18 C 1.36943 * 134.48692 * 204.64181 * 17 16 15 19 19 H 1.08003 * 119.99256 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00675 * 359.97438 * 18 17 16 21 21 N 1.31621 * 119.99532 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00374 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47093 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47090 * 119.99763 * 22 20 18 25 25 H 1.48497 * 109.47117 * 240.00294 * 22 20 18 26 26 C 1.47577 * 91.01576 * 24.64171 * 17 16 15 27 27 H 1.08998 * 109.46814 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47229 * 299.99661 * 1 2 3 29 29 H 1.08999 * 109.47124 * 60.00589 * 1 2 3 30 30 H 0.96994 * 120.00208 * 95.00449 * 4 2 1 31 31 H 1.08998 * 110.54738 * 0.02562 * 9 7 5 32 32 H 1.09000 * 110.54792 * 122.66257 * 9 7 5 33 33 H 1.09005 * 109.46715 * 89.99952 * 11 10 9 34 34 H 1.09003 * 109.46652 * 209.99292 * 11 10 9 35 35 H 1.08994 * 109.47270 * 329.99603 * 11 10 9 36 36 H 0.97005 * 125.40940 * 179.97438 * 14 12 10 37 37 H 1.09001 * 112.93943 * 288.40303 * 15 2 1 38 38 H 1.09003 * 113.76932 * 336.34089 * 16 15 2 39 39 H 1.08998 * 113.77316 * 107.74848 * 16 15 2 40 40 H 0.97001 * 120.00153 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.76535 * 221.06296 * 26 17 16 42 42 H 1.08996 * 113.77128 * 89.66415 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1586 2.4116 7 6 2.6500 -0.7283 3.5875 8 1 3.4904 -1.3766 3.3395 9 6 1.5167 -1.5395 4.2450 10 7 1.3833 -0.9396 5.5810 11 6 0.4289 -1.3613 6.6094 12 6 2.2737 0.0529 5.7086 13 8 2.3805 0.7220 6.7181 14 7 3.0350 0.2423 4.6229 15 6 2.0400 -0.7213 -1.2493 16 6 3.4666 -0.3145 -1.6607 17 7 2.9583 -0.3120 -3.0463 18 6 3.5329 -0.4678 -4.2795 19 1 2.9224 -0.4220 -5.1693 20 6 4.9000 -0.6836 -4.3861 21 7 5.6440 -0.7389 -3.3018 22 14 5.6838 -0.8955 -6.0684 23 1 4.6385 -0.7914 -7.1182 24 1 6.7017 0.1653 -6.2773 25 1 6.3341 -2.2282 -6.1472 26 6 1.5823 -0.0740 -2.5689 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 2.2491 -1.6316 1.1527 31 1 0.5903 -1.4290 3.6814 32 1 1.7933 -2.5911 4.3212 33 1 0.8831 -2.1318 7.2324 34 1 0.1600 -0.5053 7.2283 35 1 -0.4663 -1.7604 6.1325 36 1 3.7299 0.9132 4.5338 37 1 1.8829 -1.7992 -1.2114 38 1 3.7640 0.6702 -1.3001 39 1 4.2152 -1.0832 -1.4688 40 1 6.5993 -0.8893 -3.3762 41 1 0.8265 -0.6507 -3.1020 42 1 1.3262 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970272681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:25 Heat of formation + Delta-G solvation = -18.132097 kcal Electronic energy + Delta-G solvation = -24136.277593 eV Core-core repulsion = 20538.746155 eV Total energy + Delta-G solvation = -3597.531439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.39435 -40.74574 -39.57765 -37.40427 -36.20234 -35.06017 -34.17790 -32.15157 -30.11321 -29.31145 -28.10316 -26.57603 -25.66631 -24.87218 -22.89472 -21.60078 -21.51205 -20.68334 -18.88322 -18.69659 -18.52848 -17.61347 -17.07679 -16.90501 -16.60058 -16.03389 -15.74705 -15.46515 -15.17701 -15.10303 -14.78130 -14.55489 -14.43578 -14.12839 -13.60907 -13.33087 -13.27304 -13.19816 -13.06341 -12.92203 -12.84824 -12.67882 -12.51190 -11.94975 -11.72729 -11.52871 -11.48975 -11.28126 -11.15374 -10.86552 -10.38684 -10.02731 -9.56123 -8.89765 -7.89884 -5.22719 1.38168 1.46103 1.47273 1.57036 1.66352 1.86473 2.20964 2.48080 2.93535 3.30816 3.31585 3.40307 3.58317 3.80034 3.94005 4.00366 4.15882 4.34574 4.51845 4.52710 4.59024 4.63888 4.75377 4.78181 4.85744 4.88678 4.90512 4.97538 5.05193 5.14022 5.28715 5.37690 5.50580 5.59255 5.63897 5.70921 5.96557 6.00849 6.35662 6.59916 6.94231 7.24619 7.44315 7.62496 8.58133 9.26863 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002968 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.274501 B = 9432.739567 C = 9900.017311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.160 3.840 3 H 0.054 0.946 4 N -0.698 5.698 5 C 0.502 3.498 6 O -0.576 6.576 7 C 0.106 3.894 8 H 0.157 0.843 9 C 0.108 3.892 10 N -0.637 5.637 11 C 0.116 3.884 12 C 0.691 3.309 13 O -0.637 6.637 14 N -0.718 5.718 15 C -0.104 4.104 16 C 0.166 3.834 17 N -0.646 5.646 18 C -0.233 4.233 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.976 3.024 23 H -0.266 1.266 24 H -0.297 1.297 25 H -0.289 1.289 26 C 0.127 3.873 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.419 0.581 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.432 0.568 37 H 0.113 0.887 38 H 0.000 1.000 39 H 0.046 0.954 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 -8.798 14.868 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.054 3.946 3 H 0.072 0.928 4 N -0.350 5.350 5 C 0.287 3.713 6 O -0.455 6.455 7 C -0.004 4.004 8 H 0.174 0.826 9 C -0.015 4.015 10 N -0.375 5.375 11 C -0.025 4.025 12 C 0.391 3.609 13 O -0.519 6.519 14 N -0.378 5.378 15 C -0.124 4.124 16 C 0.040 3.960 17 N -0.372 5.372 18 C -0.361 4.361 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.216 1.216 26 C 0.002 3.998 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.257 0.743 31 H 0.115 0.885 32 H 0.158 0.842 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.274 0.726 37 H 0.131 0.869 38 H 0.018 0.982 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.053 -7.772 15.274 20.952 hybrid contribution 1.443 0.591 -1.162 1.945 sum -10.610 -7.181 14.112 19.060 Atomic orbital electron populations 1.22040 0.93295 1.03440 1.01953 1.20804 0.95044 0.95690 0.83054 0.92778 1.45896 1.65957 1.14885 1.08304 1.21214 0.77528 0.87163 0.85398 1.90743 1.51260 1.18033 1.85484 1.22159 1.00994 0.90656 0.86591 0.82618 1.22615 0.97893 0.99401 0.81578 1.47210 1.37774 1.35385 1.17167 1.21610 0.91254 1.00251 0.89376 1.16171 0.80208 0.81236 0.83283 1.90905 1.74423 1.53770 1.32833 1.44931 1.40024 1.39272 1.13545 1.23431 0.95867 1.00870 0.92232 1.22184 0.94456 0.96297 0.83046 1.46422 1.05221 1.83418 1.02150 1.19468 0.91557 1.40674 0.84452 0.89925 1.25596 0.96649 1.03114 1.00729 1.69999 1.04847 1.57272 1.28014 0.85044 0.78187 0.76776 0.79532 1.18992 1.22439 1.21583 1.22707 0.87730 0.97552 0.91832 0.89942 0.93445 0.91301 0.74285 0.88519 0.84192 0.91033 0.92495 0.87702 0.72627 0.86888 0.98250 0.93591 0.94359 0.91662 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.29 71.98 0.67 -2.40 16 2 C 0.16 4.07 2.42 44.99 0.11 4.18 16 3 H 0.05 1.80 7.37 -2.39 -0.02 1.78 16 4 N -0.70 -13.36 5.08 -442.53 -2.25 -15.60 16 5 C 0.50 11.14 6.92 87.66 0.61 11.74 16 6 O -0.58 -19.06 16.22 -3.04 -0.05 -19.11 16 7 C 0.11 1.57 4.17 44.51 0.19 1.75 16 8 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 9 C 0.11 1.06 7.32 86.65 0.63 1.69 16 10 N -0.64 -11.17 3.36 -863.43 -2.90 -14.07 16 11 C 0.12 1.40 11.03 127.77 1.41 2.81 16 12 C 0.69 18.38 8.60 179.57 1.54 19.92 16 13 O -0.64 -22.93 17.53 -3.99 -0.07 -23.00 16 14 N -0.72 -16.05 5.60 -460.35 -2.58 -18.63 16 15 C -0.10 -3.18 3.50 -10.14 -0.04 -3.22 16 16 C 0.17 7.37 7.07 86.48 0.61 7.98 16 17 N -0.65 -31.81 3.70 -716.85 -2.65 -34.46 16 18 C -0.23 -12.80 10.70 84.03 0.90 -11.90 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 21 N -0.95 -56.29 11.38 21.65 0.25 -56.04 16 22 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 C 0.13 4.61 7.56 86.48 0.65 5.26 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.43 7.43 -2.39 -0.02 1.41 16 30 H 0.42 5.08 8.60 -92.71 -0.80 4.28 16 31 H 0.10 0.82 7.72 -2.39 -0.02 0.80 16 32 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.06 0.94 7.92 -2.39 -0.02 0.92 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.43 9.82 8.96 -92.70 -0.83 8.99 16 37 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.00 -0.01 7.96 -2.39 -0.02 -0.03 16 39 H 0.05 2.27 7.15 -2.39 -0.02 2.25 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 42 H 0.04 1.39 8.06 -2.39 -0.02 1.37 16 Total: -1.00 -85.22 350.28 -1.05 -86.27 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -0.58 Total: 13.13 kcal Atomic # 6 Polarization: 26.73 SS G_CDS: 7.75 Total: 34.49 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -10.13 Total: -138.81 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.12 Total: -42.11 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -85.22 -1.05 -86.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970272681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.143 kcal (2) G-P(sol) polarization free energy of solvation -85.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds