Wall clock time and date at job start Tue Mar 31 2020 03:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.91736 * 2 1 4 4 C 1.54919 * 111.00291 * 123.90234 * 2 1 3 5 5 N 1.47426 * 104.83230 * 81.06513 * 4 2 1 6 6 C 1.36931 * 125.64564 * 204.09126 * 5 4 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99680 * 179.72206 * 6 5 4 9 9 N 1.31614 * 119.99888 * 0.27479 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 180.27671 * 8 6 5 11 11 H 1.48508 * 109.46872 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 119.99997 * 10 8 6 13 13 H 1.48498 * 109.47018 * 240.00044 * 10 8 6 14 14 C 1.47021 * 108.70417 * 24.35268 * 5 4 2 15 15 C 1.54339 * 107.26633 * 358.58904 * 14 5 4 16 16 H 1.09000 * 110.85247 * 219.67418 * 15 14 5 17 17 N 1.46502 * 110.67012 * 96.51932 * 15 14 5 18 18 C 1.34772 * 119.99903 * 91.41413 * 17 15 14 19 19 O 1.21285 * 119.99888 * 359.97438 * 18 17 15 20 20 C 1.50691 * 120.00039 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.47530 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.82003 * 305.56918 * 21 20 18 23 23 C 1.54380 * 109.83454 * 184.58746 * 21 20 18 24 24 C 1.55309 * 102.25168 * 219.12577 * 23 21 20 25 25 C 1.54954 * 100.94305 * 34.13285 * 24 23 21 26 26 O 1.43237 * 109.83377 * 66.44733 * 21 20 18 27 27 H 1.09001 * 109.46769 * 297.55369 * 1 2 3 28 28 H 1.08996 * 109.46850 * 57.54829 * 1 2 3 29 29 H 1.08999 * 109.47118 * 177.55441 * 1 2 3 30 30 H 1.08996 * 109.47157 * 182.44604 * 3 2 1 31 31 H 1.09002 * 109.47021 * 302.44950 * 3 2 1 32 32 H 1.09005 * 109.47154 * 62.44748 * 3 2 1 33 33 H 1.09003 * 110.36295 * 322.22340 * 4 2 1 34 34 H 1.09001 * 110.36644 * 199.90209 * 4 2 1 35 35 H 0.97005 * 119.99715 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.88280 * 118.13142 * 14 5 4 37 37 H 1.09001 * 109.88287 * 239.29807 * 14 5 4 38 38 H 0.96998 * 119.99878 * 271.41209 * 17 15 14 39 39 H 1.08998 * 109.47460 * 299.99460 * 20 18 17 40 40 H 1.09003 * 109.47615 * 59.99831 * 20 18 17 41 41 H 1.08997 * 110.84792 * 337.31640 * 23 21 20 42 42 H 1.08999 * 110.85144 * 100.93904 * 23 21 20 43 43 H 1.08998 * 111.12562 * 276.21354 * 24 23 21 44 44 H 1.08999 * 111.16212 * 152.06250 * 24 23 21 45 45 H 1.08993 * 110.31055 * 204.64152 * 25 24 23 46 46 H 1.09001 * 110.30662 * 82.46710 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0853 -0.8067 1.2004 5 7 2.0139 -2.2160 0.7734 6 6 1.9461 -3.3000 1.6072 7 1 1.9413 -3.1583 2.6779 8 6 1.8769 -4.5807 1.0763 9 7 1.8821 -4.7534 -0.2285 10 14 1.7766 -6.0591 2.2137 11 1 1.7876 -5.5990 3.6257 12 1 0.5212 -6.8056 1.9457 13 1 2.9418 -6.9480 1.9741 14 6 2.0340 -2.2650 -0.6959 15 6 2.0862 -0.8080 -1.2022 16 1 1.4524 -0.6792 -2.0796 17 7 3.4653 -0.4127 -1.4988 18 6 3.9625 -0.5813 -2.7401 19 8 3.2683 -1.0608 -3.6114 20 6 5.3812 -0.1752 -3.0451 21 6 5.6916 -0.4700 -4.5140 22 1 5.4771 -1.5157 -4.7344 23 6 7.1763 -0.1648 -4.8071 24 6 7.1083 0.4760 -6.2202 25 6 5.7555 1.2271 -6.1378 26 8 4.9011 0.3762 -5.3571 27 1 -0.3633 0.4754 0.9111 28 1 -0.3633 0.5514 -0.8672 29 1 -0.3633 -1.0267 -0.0439 30 1 3.1650 1.4020 -0.0439 31 1 1.6909 1.9654 -0.8672 32 1 1.7619 1.9383 0.9112 33 1 1.4672 -0.6461 2.0837 34 1 3.1183 -0.5234 1.4025 35 1 1.8342 -5.6484 -0.5994 36 1 2.9146 -2.8096 -1.0366 37 1 1.1300 -2.7509 -1.0630 38 1 4.0206 -0.0295 -0.8019 39 1 5.5027 0.8913 -2.8556 40 1 6.0649 -0.7374 -2.4090 41 1 7.5782 0.5408 -4.0801 42 1 7.7647 -1.0822 -4.8252 43 1 7.0868 -0.2880 -6.9974 44 1 7.9339 1.1700 -6.3777 45 1 5.3396 1.3680 -7.1353 46 1 5.8865 2.1890 -5.6422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972823039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:32 Heat of formation + Delta-G solvation = -63.521565 kcal Electronic energy + Delta-G solvation = -25280.871905 eV Core-core repulsion = 21784.912575 eV Total energy + Delta-G solvation = -3495.959330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99662 -39.14749 -37.61884 -33.78468 -32.89758 -32.34471 -31.60635 -30.65206 -28.21918 -27.04556 -26.18267 -25.57171 -23.36782 -22.07222 -21.36801 -20.25481 -19.68397 -18.58901 -17.10008 -16.72072 -16.47763 -16.02873 -15.54502 -14.87787 -14.44847 -14.34732 -13.91919 -13.84150 -13.65691 -13.37052 -13.19878 -12.83894 -12.40710 -12.14691 -11.95544 -11.85553 -11.75339 -11.62846 -11.37336 -11.27732 -11.21009 -11.01364 -10.98607 -10.91542 -10.76618 -10.31304 -10.16241 -9.94339 -9.81772 -9.59676 -9.51043 -9.24909 -8.59178 -8.29270 -6.78331 -5.65343 -3.00167 3.20075 3.42053 3.47119 3.50140 3.62690 3.87381 4.33576 4.53005 4.61895 4.74870 4.99638 5.02800 5.07855 5.18806 5.33015 5.36376 5.41105 5.44224 5.51023 5.57253 5.57773 5.64890 5.70399 5.75745 5.82885 5.88684 5.97082 6.09696 6.14274 6.22079 6.27578 6.31451 6.46738 6.64568 6.66389 6.73180 6.85966 7.05028 7.10217 7.61279 7.72118 7.88477 8.08955 8.30142 8.81814 9.26109 9.86848 10.52806 11.45142 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.004102 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.094896 B = 6824.573400 C = 7885.581582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.129 4.129 4 C 0.145 3.855 5 N -0.603 5.603 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.176 3.824 15 C 0.125 3.875 16 H 0.088 0.912 17 N -0.714 5.714 18 C 0.513 3.487 19 O -0.530 6.530 20 C -0.153 4.153 21 C 0.098 3.902 22 H 0.089 0.911 23 C -0.152 4.152 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.360 6.360 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.014 0.986 35 H 0.252 0.748 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.393 0.607 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 14.613 -6.850 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.050 3.950 15 C 0.020 3.980 16 H 0.106 0.894 17 N -0.366 5.366 18 C 0.298 3.702 19 O -0.406 6.406 20 C -0.193 4.193 21 C 0.039 3.961 22 H 0.107 0.893 23 C -0.190 4.190 24 C -0.194 4.194 25 C -0.032 4.032 26 O -0.279 6.279 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.227 0.773 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.716 14.010 -7.505 18.126 hybrid contribution 0.570 -0.678 1.019 1.350 sum 9.285 13.332 -6.485 17.493 Atomic orbital electron populations 1.21588 0.93423 1.02781 1.00471 1.22014 0.96283 0.94140 0.96761 1.21661 1.00252 0.95621 1.01185 1.21618 0.96459 0.85805 0.94304 1.44455 1.86874 0.99701 1.01916 1.19072 1.43703 0.84045 0.88916 0.90481 1.24809 1.02298 0.97357 0.95924 1.69986 1.56733 1.20660 1.09135 0.86081 0.77246 0.83067 0.79569 1.20583 1.21787 1.21867 1.21516 1.01493 0.88742 0.83225 1.22430 0.81508 0.97180 0.96909 0.89439 1.46027 1.14869 1.64525 1.11166 1.20315 0.88921 0.78603 0.82358 1.90718 1.60382 1.43508 1.45986 1.22117 0.95709 1.03465 0.98022 1.22474 0.88896 0.96013 0.88672 0.89268 1.23213 0.96672 1.02014 0.97108 1.23262 0.98271 1.00330 0.97532 1.23384 0.89873 0.93782 0.96139 1.88640 1.30992 1.52412 1.55818 0.92930 0.93422 0.91319 0.93065 0.92930 0.92811 0.94197 0.96816 0.93780 0.93540 0.92935 0.77250 0.89023 0.88135 0.90364 0.89805 0.90348 0.90157 0.90010 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.61 37.16 0.32 -1.75 16 2 C -0.09 -1.55 0.83 -152.35 -0.13 -1.67 16 3 C -0.13 -1.74 8.35 37.16 0.31 -1.43 16 4 C 0.14 2.90 6.13 -2.52 -0.02 2.88 16 5 N -0.60 -15.22 3.38 -170.06 -0.57 -15.80 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.66 10.31 55.49 0.57 -27.09 16 10 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.18 4.40 4.74 -3.06 -0.01 4.39 16 15 C 0.12 2.47 2.59 -66.09 -0.17 2.29 16 16 H 0.09 1.85 7.45 -51.93 -0.39 1.46 16 17 N -0.71 -12.19 4.41 -52.02 -0.23 -12.42 16 18 C 0.51 9.05 7.72 -10.99 -0.08 8.96 16 19 O -0.53 -11.73 15.13 -6.82 -0.10 -11.83 16 20 C -0.15 -1.93 5.27 -27.89 -0.15 -2.08 16 21 C 0.10 1.26 3.04 -26.01 -0.08 1.18 16 22 H 0.09 1.32 7.95 -51.93 -0.41 0.91 16 23 C -0.15 -1.34 6.54 -24.78 -0.16 -1.51 16 24 C -0.16 -1.26 7.16 -24.48 -0.18 -1.44 16 25 C 0.05 0.46 7.78 38.19 0.30 0.75 16 26 O -0.36 -5.32 10.36 -47.61 -0.49 -5.82 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.34 7.83 -51.93 -0.41 0.93 16 30 H 0.05 0.63 6.26 -51.93 -0.33 0.31 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.01 0.27 8.04 -51.93 -0.42 -0.14 16 35 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.05 1.33 7.43 -51.93 -0.39 0.94 16 37 H 0.05 1.50 7.36 -51.93 -0.38 1.11 16 38 H 0.39 5.74 7.05 -40.82 -0.29 5.45 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -34.11 359.97 -8.75 -42.86 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.03 Total: 3.58 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.30 Total: 3.75 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.23 Total: -55.31 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.60 Total: -17.65 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.11 -8.75 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972823039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.660 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds