Wall clock time and date at job start Tue Mar 31 2020 03:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.91736 * 2 1 4 4 C 1.54919 * 111.00291 * 123.90234 * 2 1 3 5 5 N 1.47426 * 104.83230 * 81.06513 * 4 2 1 6 6 C 1.36931 * 125.64564 * 204.09126 * 5 4 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99680 * 179.72206 * 6 5 4 9 9 N 1.31614 * 119.99888 * 0.27479 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 180.27671 * 8 6 5 11 11 H 1.48508 * 109.46872 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 119.99997 * 10 8 6 13 13 H 1.48498 * 109.47018 * 240.00044 * 10 8 6 14 14 C 1.47021 * 108.70417 * 24.35268 * 5 4 2 15 15 C 1.54339 * 107.26633 * 358.58904 * 14 5 4 16 16 H 1.09000 * 110.85247 * 219.67418 * 15 14 5 17 17 N 1.46502 * 110.67012 * 96.51932 * 15 14 5 18 18 C 1.34772 * 119.99903 * 91.41413 * 17 15 14 19 19 O 1.21285 * 119.99888 * 359.97438 * 18 17 15 20 20 C 1.50691 * 120.00039 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.47530 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.82003 * 305.56918 * 21 20 18 23 23 C 1.54380 * 109.83454 * 184.58746 * 21 20 18 24 24 C 1.55309 * 102.25168 * 219.12577 * 23 21 20 25 25 C 1.54954 * 100.94305 * 34.13285 * 24 23 21 26 26 O 1.43237 * 109.83377 * 66.44733 * 21 20 18 27 27 H 1.09001 * 109.46769 * 297.55369 * 1 2 3 28 28 H 1.08996 * 109.46850 * 57.54829 * 1 2 3 29 29 H 1.08999 * 109.47118 * 177.55441 * 1 2 3 30 30 H 1.08996 * 109.47157 * 182.44604 * 3 2 1 31 31 H 1.09002 * 109.47021 * 302.44950 * 3 2 1 32 32 H 1.09005 * 109.47154 * 62.44748 * 3 2 1 33 33 H 1.09003 * 110.36295 * 322.22340 * 4 2 1 34 34 H 1.09001 * 110.36644 * 199.90209 * 4 2 1 35 35 H 0.97005 * 119.99715 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.88280 * 118.13142 * 14 5 4 37 37 H 1.09001 * 109.88287 * 239.29807 * 14 5 4 38 38 H 0.96998 * 119.99878 * 271.41209 * 17 15 14 39 39 H 1.08998 * 109.47460 * 299.99460 * 20 18 17 40 40 H 1.09003 * 109.47615 * 59.99831 * 20 18 17 41 41 H 1.08997 * 110.84792 * 337.31640 * 23 21 20 42 42 H 1.08999 * 110.85144 * 100.93904 * 23 21 20 43 43 H 1.08998 * 111.12562 * 276.21354 * 24 23 21 44 44 H 1.08999 * 111.16212 * 152.06250 * 24 23 21 45 45 H 1.08993 * 110.31055 * 204.64152 * 25 24 23 46 46 H 1.09001 * 110.30662 * 82.46710 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0853 -0.8067 1.2004 5 7 2.0139 -2.2160 0.7734 6 6 1.9461 -3.3000 1.6072 7 1 1.9413 -3.1583 2.6779 8 6 1.8769 -4.5807 1.0763 9 7 1.8821 -4.7534 -0.2285 10 14 1.7766 -6.0591 2.2137 11 1 1.7876 -5.5990 3.6257 12 1 0.5212 -6.8056 1.9457 13 1 2.9418 -6.9480 1.9741 14 6 2.0340 -2.2650 -0.6959 15 6 2.0862 -0.8080 -1.2022 16 1 1.4524 -0.6792 -2.0796 17 7 3.4653 -0.4127 -1.4988 18 6 3.9625 -0.5813 -2.7401 19 8 3.2683 -1.0608 -3.6114 20 6 5.3812 -0.1752 -3.0451 21 6 5.6916 -0.4700 -4.5140 22 1 5.4771 -1.5157 -4.7344 23 6 7.1763 -0.1648 -4.8071 24 6 7.1083 0.4760 -6.2202 25 6 5.7555 1.2271 -6.1378 26 8 4.9011 0.3762 -5.3571 27 1 -0.3633 0.4754 0.9111 28 1 -0.3633 0.5514 -0.8672 29 1 -0.3633 -1.0267 -0.0439 30 1 3.1650 1.4020 -0.0439 31 1 1.6909 1.9654 -0.8672 32 1 1.7619 1.9383 0.9112 33 1 1.4672 -0.6461 2.0837 34 1 3.1183 -0.5234 1.4025 35 1 1.8342 -5.6484 -0.5994 36 1 2.9146 -2.8096 -1.0366 37 1 1.1300 -2.7509 -1.0630 38 1 4.0206 -0.0295 -0.8019 39 1 5.5027 0.8913 -2.8556 40 1 6.0649 -0.7374 -2.4090 41 1 7.5782 0.5408 -4.0801 42 1 7.7647 -1.0822 -4.8252 43 1 7.0868 -0.2880 -6.9974 44 1 7.9339 1.1700 -6.3777 45 1 5.3396 1.3680 -7.1353 46 1 5.8865 2.1890 -5.6422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972823039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:31 Heat of formation + Delta-G solvation = -86.930182 kcal Electronic energy + Delta-G solvation = -25281.886979 eV Core-core repulsion = 21784.912575 eV Total energy + Delta-G solvation = -3496.974404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32272 -40.33397 -39.10625 -35.66840 -34.43755 -33.28036 -32.61393 -32.50023 -29.86674 -28.22580 -27.58156 -27.18002 -25.06617 -23.02006 -22.40201 -21.88820 -21.14070 -20.06376 -18.68214 -18.14829 -17.71029 -17.35868 -16.69162 -16.62534 -15.92698 -15.64762 -15.54737 -15.27407 -14.87968 -14.75353 -14.26548 -13.97452 -13.85146 -13.72310 -13.44099 -13.16127 -12.99997 -12.90486 -12.76225 -12.68377 -12.57152 -12.56586 -12.16756 -12.05563 -11.99366 -11.84834 -11.72280 -11.66590 -11.50391 -11.30336 -10.83342 -10.66390 -10.44278 -9.89700 -8.89017 -7.83238 -5.20293 1.43907 1.45368 1.55815 1.80733 2.30945 2.49413 2.99881 3.35061 3.51815 3.60011 3.73441 3.77862 3.95471 3.98501 4.03712 4.09439 4.25758 4.32262 4.41640 4.50267 4.55995 4.62362 4.71276 4.82432 4.85333 4.86385 4.89398 4.94765 4.95818 5.01630 5.06384 5.10033 5.14897 5.17679 5.31461 5.34280 5.37513 5.46656 5.56658 5.73026 5.80074 6.17682 6.24080 6.70676 7.08336 7.44190 7.78200 8.42900 9.26166 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.004102 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.094896 B = 6824.573400 C = 7885.581582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.122 4.122 4 C 0.139 3.861 5 N -0.620 5.620 6 C -0.235 4.235 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.955 5.955 10 Si 0.978 3.022 11 H -0.260 1.260 12 H -0.296 1.296 13 H -0.295 1.295 14 C 0.195 3.805 15 C 0.137 3.863 16 H 0.069 0.931 17 N -0.704 5.704 18 C 0.503 3.497 19 O -0.584 6.584 20 C -0.141 4.141 21 C 0.089 3.911 22 H 0.052 0.948 23 C -0.142 4.142 24 C -0.149 4.149 25 C 0.035 3.965 26 O -0.400 6.400 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.243 0.757 36 H 0.000 1.000 37 H 0.001 0.999 38 H 0.409 0.591 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.519 17.673 -5.227 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.179 4.179 4 C 0.015 3.985 5 N -0.346 5.346 6 C -0.364 4.364 7 H 0.106 0.894 8 C -0.263 4.263 9 N -0.605 5.605 10 Si 0.807 3.193 11 H -0.184 1.184 12 H -0.224 1.224 13 H -0.222 1.222 14 C 0.068 3.932 15 C 0.031 3.969 16 H 0.087 0.913 17 N -0.356 5.356 18 C 0.291 3.709 19 O -0.464 6.464 20 C -0.181 4.181 21 C 0.031 3.969 22 H 0.070 0.930 23 C -0.180 4.180 24 C -0.187 4.187 25 C -0.041 4.041 26 O -0.320 6.320 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.247 0.753 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.795 17.135 -5.831 21.075 hybrid contribution -0.113 -1.614 0.495 1.692 sum 10.682 15.521 -5.336 19.583 Atomic orbital electron populations 1.21587 0.93170 1.00760 1.02581 1.21994 0.96491 0.95990 0.93268 1.21630 1.01094 0.92293 1.02904 1.21889 0.97779 0.83193 0.95666 1.44697 1.86571 1.01665 1.01704 1.19541 1.42043 0.85043 0.89816 0.89375 1.25694 1.02956 1.00430 0.97250 1.70263 1.58601 1.20405 1.11206 0.85008 0.76456 0.79242 0.78636 1.18371 1.22352 1.22221 1.21061 0.96874 0.91529 0.83692 1.21988 0.83292 0.94463 0.97189 0.91310 1.45886 1.13899 1.64048 1.11774 1.21362 0.90697 0.77207 0.81596 1.90698 1.62232 1.45814 1.47615 1.22169 0.91953 1.05673 0.98277 1.22512 0.91606 0.94140 0.88649 0.92966 1.23197 0.93500 1.03170 0.98093 1.23260 0.97966 1.00464 0.96966 1.23640 0.90479 0.94065 0.95960 1.88602 1.33372 1.53281 1.56728 0.90450 0.91681 0.95388 0.91571 0.92023 0.90369 0.93354 0.94826 0.94820 0.98220 0.98121 0.75315 0.85662 0.85750 0.87876 0.88912 0.90868 0.87250 0.89833 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.61 71.98 0.62 -3.35 16 2 C -0.08 -2.48 0.83 -50.79 -0.04 -2.52 16 3 C -0.12 -2.75 8.35 71.98 0.60 -2.15 16 4 C 0.14 5.36 6.13 86.86 0.53 5.89 16 5 N -0.62 -31.96 3.38 -691.93 -2.34 -34.30 16 6 C -0.24 -13.30 10.28 84.04 0.86 -12.44 16 7 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 8 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 9 N -0.96 -61.04 10.31 21.65 0.22 -60.81 16 10 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 13 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 14 C 0.19 10.38 4.74 86.73 0.41 10.79 16 15 C 0.14 5.55 2.59 46.19 0.12 5.67 16 16 H 0.07 3.06 7.45 -2.39 -0.02 3.04 16 17 N -0.70 -23.65 4.41 -436.90 -1.93 -25.58 16 18 C 0.50 17.95 7.72 87.65 0.68 18.63 16 19 O -0.58 -27.36 15.13 8.79 0.13 -27.23 16 20 C -0.14 -3.31 5.27 29.85 0.16 -3.16 16 21 C 0.09 2.26 3.04 31.06 0.09 2.36 16 22 H 0.05 1.66 7.95 -2.39 -0.02 1.64 16 23 C -0.14 -2.13 6.54 31.86 0.21 -1.93 16 24 C -0.15 -2.04 7.16 32.06 0.23 -1.81 16 25 C 0.03 0.65 7.78 72.65 0.57 1.21 16 26 O -0.40 -11.85 10.36 -137.15 -1.42 -13.27 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.03 1.10 7.83 -2.39 -0.02 1.09 16 30 H 0.07 1.31 6.26 -2.39 -0.01 1.30 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 34 H 0.03 1.20 8.04 -2.39 -0.02 1.18 16 35 H 0.24 15.21 8.31 -92.70 -0.77 14.44 16 36 H 0.00 -0.02 7.43 -2.39 -0.02 -0.04 16 37 H 0.00 0.04 7.36 -2.39 -0.02 0.02 16 38 H 0.41 10.94 7.05 -92.71 -0.65 10.29 16 39 H 0.13 2.13 8.14 -2.39 -0.02 2.12 16 40 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.10 1.07 7.85 -2.39 -0.02 1.05 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -81.87 359.97 2.50 -79.38 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.30 Total: 19.20 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 5.50 Total: 13.49 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -4.04 Total: -120.69 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.29 Total: -40.50 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -81.87 2.50 -79.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972823039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.551 kcal (2) G-P(sol) polarization free energy of solvation -81.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds