Wall clock time and date at job start Tue Mar 31 2020 03:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.91451 * 2 1 4 4 C 1.54904 * 111.00633 * 236.09454 * 2 1 3 5 5 N 1.47423 * 104.83598 * 204.91602 * 4 2 1 6 6 C 1.36931 * 125.64810 * 204.09558 * 5 4 2 7 7 H 1.08005 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99787 * 180.02562 * 6 5 4 9 9 N 1.31623 * 120.00053 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99938 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47033 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46937 * 119.99743 * 10 8 6 13 13 H 1.48501 * 109.46991 * 239.99567 * 10 8 6 14 14 C 1.47017 * 108.70049 * 24.13130 * 5 4 2 15 15 C 1.54324 * 107.27480 * 358.94026 * 14 5 4 16 16 H 1.09004 * 110.72379 * 219.27429 * 15 14 5 17 17 N 1.46494 * 110.72126 * 96.16814 * 15 14 5 18 18 C 1.34784 * 119.99635 * 86.45747 * 17 15 14 19 19 O 1.21279 * 119.99925 * 359.97438 * 18 17 15 20 20 C 1.50700 * 119.99961 * 180.02562 * 18 17 15 21 21 H 1.09003 * 109.51917 * 300.12889 * 20 18 17 22 22 C 1.53169 * 109.52392 * 180.02562 * 20 18 17 23 23 C 1.53177 * 109.04030 * 183.11346 * 22 20 18 24 24 C 1.53091 * 109.16355 * 56.97595 * 23 22 20 25 25 O 1.42905 * 109.41424 * 302.39871 * 24 23 22 26 26 C 1.42895 * 114.10238 * 61.15416 * 25 24 23 27 27 H 1.09003 * 109.47281 * 296.09972 * 1 2 3 28 28 H 1.08997 * 109.47192 * 56.10046 * 1 2 3 29 29 H 1.09001 * 109.46865 * 176.10233 * 1 2 3 30 30 H 1.09001 * 109.47024 * 183.89845 * 3 2 1 31 31 H 1.08997 * 109.46908 * 303.90199 * 3 2 1 32 32 H 1.09001 * 109.47155 * 63.89871 * 3 2 1 33 33 H 1.09005 * 110.36419 * 86.07595 * 4 2 1 34 34 H 1.09005 * 110.45872 * 323.81088 * 4 2 1 35 35 H 0.97003 * 119.99535 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.88259 * 239.52552 * 14 5 4 37 37 H 1.09002 * 110.01536 * 118.43267 * 14 5 4 38 38 H 0.96995 * 120.00292 * 266.73180 * 17 15 14 39 39 H 1.09003 * 109.54577 * 302.97721 * 22 20 18 40 40 H 1.09000 * 109.54474 * 63.15556 * 22 20 18 41 41 H 1.08992 * 109.52641 * 176.88800 * 23 22 20 42 42 H 1.09005 * 109.51908 * 297.00919 * 23 22 20 43 43 H 1.09004 * 109.47742 * 62.37629 * 24 23 22 44 44 H 1.08998 * 109.48393 * 182.39661 * 24 23 22 45 45 H 1.08995 * 109.48219 * 178.85645 * 26 25 24 46 46 H 1.09008 * 109.48193 * 58.82365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2431 -0.7732 6 6 4.4640 -1.5667 -1.6071 7 1 4.3334 -1.5117 -2.6778 8 6 5.6831 -1.9654 -1.0762 9 7 5.8425 -2.0319 0.2286 10 14 7.0974 -2.4075 -2.2137 11 1 6.6641 -2.2522 -3.6256 12 1 8.2476 -1.5071 -1.9465 13 1 7.5045 -3.8152 -1.9733 14 6 3.4675 -1.2741 0.6961 15 6 2.0862 -0.8079 1.2023 16 1 2.1920 -0.1724 2.0815 17 7 1.2269 -1.9574 1.4962 18 6 1.2807 -2.5468 2.7072 19 8 2.0409 -2.1258 3.5532 20 6 0.3972 -3.7296 3.0094 21 1 -0.6482 -3.4401 2.9025 22 6 0.6519 -4.2058 4.4428 23 6 -0.1936 -5.4544 4.7122 24 6 0.1485 -6.5265 3.6743 25 8 -0.0815 -6.0083 2.3626 26 6 0.7164 -4.8684 2.0373 27 1 -0.3634 0.4521 0.9229 28 1 -0.3633 0.5731 -0.8530 29 1 -0.3633 -1.0253 -0.0699 30 1 3.1637 1.4026 -0.0699 31 1 1.6705 1.9732 -0.8529 32 1 1.7836 1.9300 0.9229 33 1 2.1560 -0.1720 -2.0836 34 1 1.4524 -1.6704 -1.4042 35 1 6.6945 -2.3102 0.5995 36 1 4.2426 -0.5997 1.0600 37 1 3.6663 -2.2883 1.0425 38 1 0.6220 -2.2967 0.8181 39 1 1.7078 -4.4473 4.5646 40 1 0.3748 -3.4181 5.1434 41 1 0.0229 -5.8323 5.7113 42 1 -1.2512 -5.2005 4.6401 43 1 1.1965 -6.8087 3.7751 44 1 -0.4807 -7.4019 3.8351 45 1 0.4962 -4.5492 1.0186 46 1 1.7719 -5.1288 2.1166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972851643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:52 Heat of formation + Delta-G solvation = -69.389125 kcal Electronic energy + Delta-G solvation = -25757.401443 eV Core-core repulsion = 22261.187676 eV Total energy + Delta-G solvation = -3496.213767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27330 -38.98423 -37.67873 -33.90230 -33.57030 -33.06714 -31.34013 -30.68623 -28.05653 -26.83077 -25.63597 -25.06307 -24.44051 -23.20916 -21.06405 -20.17315 -19.64499 -18.69089 -17.08314 -16.68695 -16.30216 -16.05456 -15.60116 -15.03622 -14.64548 -14.47114 -14.00733 -13.93044 -13.68006 -13.44305 -13.26691 -13.02074 -12.68670 -12.42523 -12.05214 -11.98181 -11.70536 -11.59168 -11.39352 -11.18466 -11.08773 -11.02093 -10.94667 -10.79098 -10.47974 -10.37472 -10.22657 -9.98896 -9.86439 -9.69466 -9.64338 -9.32079 -8.62791 -8.43339 -6.81990 -5.68535 -3.03386 2.96744 3.40386 3.45681 3.48530 3.50132 3.81816 4.50517 4.59715 4.75956 4.80786 4.85410 4.93989 5.09340 5.22763 5.27468 5.30156 5.33270 5.52854 5.54025 5.63005 5.68233 5.69694 5.76763 5.80526 5.86992 5.91412 6.02596 6.05167 6.15997 6.19695 6.24356 6.25074 6.39089 6.58148 6.61314 6.67794 6.75442 6.95976 7.05649 7.56629 7.65267 7.83179 7.95019 8.26403 8.62337 9.22882 9.83601 10.48949 11.42039 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.005088 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.000847 B = 5502.220335 C = 6659.201202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.176 3.824 15 C 0.124 3.876 16 H 0.086 0.914 17 N -0.710 5.710 18 C 0.517 3.483 19 O -0.537 6.537 20 C -0.141 4.141 21 H 0.101 0.899 22 C -0.102 4.102 23 C -0.155 4.155 24 C 0.056 3.944 25 O -0.379 6.379 26 C 0.072 3.928 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.015 0.985 35 H 0.252 0.748 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.394 0.606 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -2.546 5.431 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.051 3.949 15 C 0.019 3.981 16 H 0.104 0.896 17 N -0.361 5.361 18 C 0.302 3.698 19 O -0.413 6.413 20 C -0.163 4.163 21 H 0.119 0.881 22 C -0.140 4.140 23 C -0.192 4.192 24 C -0.021 4.021 25 O -0.297 6.297 26 C -0.006 4.006 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.229 0.771 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.209 -2.386 5.926 15.579 hybrid contribution 0.746 -0.298 -0.697 1.064 sum -13.463 -2.684 5.229 14.690 Atomic orbital electron populations 1.21679 0.94756 1.01062 1.01363 1.22009 0.94410 0.96070 0.96625 1.21594 1.02517 0.93721 1.00487 1.21626 0.87800 0.94520 0.94299 1.44443 1.07644 1.78955 1.01844 1.19068 0.89390 1.38337 0.88926 0.90436 1.24806 0.97820 1.01792 0.95932 1.69982 1.24087 1.53340 1.09142 0.86082 0.82561 0.77737 0.79598 1.20545 1.21784 1.21843 1.21498 0.89669 1.00442 0.83297 1.22475 0.92457 0.86281 0.96904 0.89617 1.46075 1.42818 1.33023 1.14155 1.20251 0.83243 0.83999 0.82277 1.90701 1.39287 1.64535 1.46817 1.21985 1.00954 0.94968 0.98404 0.88138 1.21393 1.01058 0.97219 0.94345 1.22216 1.00874 0.96436 0.99720 1.22627 1.00936 0.95968 0.82532 1.87937 1.64198 1.45527 1.32070 1.22528 0.95657 0.84521 0.97862 0.92868 0.92618 0.93068 0.91199 0.92889 0.93377 0.94135 0.96714 0.93772 0.92967 0.93430 0.77051 0.90730 0.90801 0.90618 0.91107 0.92926 0.88908 0.88275 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.22 37.16 0.31 -1.34 16 2 C -0.09 -1.46 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -1.99 8.57 37.16 0.32 -1.67 16 4 C 0.14 2.81 6.14 -2.53 -0.02 2.79 16 5 N -0.60 -14.88 3.38 -170.07 -0.57 -15.46 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.36 10.31 55.49 0.57 -26.78 16 10 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.18 4.30 4.79 -3.07 -0.01 4.29 16 15 C 0.12 2.33 2.51 -66.10 -0.17 2.16 16 16 H 0.09 1.69 7.60 -51.93 -0.39 1.30 16 17 N -0.71 -11.50 4.47 -52.03 -0.23 -11.73 16 18 C 0.52 8.67 7.15 -10.98 -0.08 8.59 16 19 O -0.54 -11.17 15.69 5.56 0.09 -11.09 16 20 C -0.14 -1.83 2.73 -91.64 -0.25 -2.08 16 21 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 22 C -0.10 -1.26 4.62 -26.55 -0.12 -1.38 16 23 C -0.15 -1.48 6.14 -26.59 -0.16 -1.65 16 24 C 0.06 0.58 6.84 37.20 0.25 0.83 16 25 O -0.38 -4.85 10.76 -35.23 -0.38 -5.23 16 26 C 0.07 0.94 6.01 37.20 0.22 1.16 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.59 6.38 -51.93 -0.33 0.26 16 30 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.78 8.05 -51.93 -0.42 0.37 16 34 H 0.02 0.29 7.99 -51.93 -0.41 -0.13 16 35 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.05 1.45 7.38 -51.93 -0.38 1.07 16 37 H 0.05 1.33 7.41 -51.93 -0.38 0.95 16 38 H 0.39 5.49 6.39 -40.82 -0.26 5.23 16 39 H 0.07 1.04 8.02 -51.93 -0.42 0.63 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.22 7.66 -51.93 -0.40 0.83 16 46 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -32.23 356.31 -8.28 -40.51 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.01 Total: 3.83 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.09 Total: 3.38 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.24 Total: -53.97 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.29 Total: -16.32 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.23 -8.28 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972851643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.879 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds