Wall clock time and date at job start Tue Mar 31 2020 03:37:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 110.64200 * 2 1
4 4 C 1.54323 * 110.71813 * 123.13719 * 2 1 3
5 5 N 1.47025 * 107.27145 * 140.55444 * 4 2 1
6 6 C 1.36932 * 125.64998 * 181.02568 * 5 4 2
7 7 H 1.08008 * 120.00153 * 14.86450 * 6 5 4
8 8 C 1.38810 * 119.99977 * 194.87317 * 6 5 4
9 9 N 1.31622 * 119.99683 * 203.65960 * 8 6 5
10 10 Si 1.86796 * 120.00122 * 23.65462 * 8 6 5
11 11 H 1.48505 * 109.47139 * 270.00361 * 10 8 6
12 12 H 1.48496 * 109.47202 * 30.00347 * 10 8 6
13 13 H 1.48497 * 109.47162 * 150.00474 * 10 8 6
14 14 C 1.47423 * 108.69906 * 1.28799 * 5 4 2
15 15 C 1.55125 * 104.72655 * 335.55056 * 14 5 4
16 16 H 1.09004 * 110.93923 * 155.28613 * 15 14 5
17 17 N 1.46495 * 111.19288 * 279.19414 * 15 14 5
18 18 C 1.34773 * 120.00018 * 267.18179 * 17 15 14
19 19 O 1.21282 * 120.00154 * 0.02562 * 18 17 15
20 20 C 1.50706 * 120.00105 * 179.97438 * 18 17 15
21 21 C 1.52990 * 110.45618 * 300.70342 * 20 18 17
22 22 C 1.54514 * 110.50704 * 178.09700 * 20 18 17
23 23 C 1.54796 * 103.91056 * 241.38831 * 22 20 18
24 24 O 1.44427 * 104.80598 * 335.92191 * 23 22 20
25 25 C 1.44420 * 105.27445 * 40.58504 * 24 23 22
26 26 H 1.09003 * 109.47355 * 298.31781 * 1 2 3
27 27 H 1.09001 * 109.47205 * 58.31214 * 1 2 3
28 28 H 1.08993 * 109.47506 * 178.31485 * 1 2 3
29 29 H 1.09000 * 109.47273 * 181.68744 * 3 2 1
30 30 H 1.09001 * 109.46864 * 301.68498 * 3 2 1
31 31 H 1.09000 * 109.47523 * 61.68145 * 3 2 1
32 32 H 1.09003 * 109.88183 * 21.13712 * 4 2 1
33 33 H 1.08997 * 109.88665 * 259.97326 * 4 2 1
34 34 H 0.96998 * 120.00502 * 354.68781 * 9 8 6
35 35 H 1.09002 * 110.36805 * 94.48322 * 14 5 4
36 36 H 1.09002 * 110.36520 * 216.80680 * 14 5 4
37 37 H 0.97003 * 120.00375 * 87.19009 * 17 15 14
38 38 H 1.09003 * 109.47195 * 59.30208 * 21 20 18
39 39 H 1.09000 * 109.47179 * 179.30197 * 21 20 18
40 40 H 1.09001 * 109.47609 * 299.29470 * 21 20 18
41 41 H 1.08998 * 110.51356 * 0.02562 * 22 20 18
42 42 H 1.09000 * 110.50942 * 122.71388 * 22 20 18
43 43 H 1.08999 * 110.31006 * 217.12295 * 23 22 20
44 44 H 1.09001 * 110.52983 * 94.83106 * 23 22 20
45 45 H 1.08997 * 110.37373 * 200.66010 * 25 24 23
46 46 H 1.09003 * 110.37225 * 78.31855 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0694 1.4318 0.0000
4 6 2.0760 -0.7890 1.2087
5 7 3.2444 -1.5495 0.7418
6 6 4.0041 -2.3944 1.5060
7 1 3.6362 -2.7353 2.4626
8 6 5.2472 -2.8126 1.0515
9 7 5.7700 -3.9331 1.5027
10 14 6.1780 -1.7854 -0.2006
11 1 5.8069 -2.2198 -1.5714
12 1 5.8286 -0.3530 -0.0237
13 1 7.6384 -1.9668 -0.0023
14 6 3.4665 -1.2468 -0.6839
15 6 2.0789 -0.7976 -1.2124
16 1 2.1844 -0.1556 -2.0870
17 7 1.2271 -1.9514 -1.5110
18 6 1.2025 -2.4666 -2.7561
19 8 1.8859 -1.9753 -3.6293
20 6 0.3266 -3.6539 -3.0632
21 6 0.7108 -4.8439 -2.1818
22 6 0.4307 -4.0313 -4.5579
23 6 -1.0121 -3.8505 -5.0888
24 8 -1.8543 -3.9926 -3.9242
25 6 -1.1626 -3.2932 -2.8668
26 1 -0.3634 0.4875 0.9047
27 1 -0.3634 0.5398 -0.8745
28 1 -0.3634 -1.0271 -0.0302
29 1 3.1587 1.4097 -0.0303
30 1 1.6923 1.9620 -0.8745
31 1 1.7413 1.9437 0.9047
32 1 1.3128 -1.4730 1.5802
33 1 2.3740 -0.0989 1.9979
34 1 5.3239 -4.4269 2.2084
35 1 4.1947 -0.4429 -0.7921
36 1 3.8030 -2.1384 -1.2130
37 1 0.6807 -2.3446 -0.8126
38 1 0.5990 -4.5701 -1.1327
39 1 0.0602 -5.6887 -2.4081
40 1 1.7468 -5.1210 -2.3767
41 1 1.1160 -3.3593 -5.0746
42 1 0.7535 -5.0664 -4.6689
43 1 -1.2450 -4.6227 -5.8220
44 1 -1.1364 -2.8609 -5.5285
45 1 -1.5111 -3.6372 -1.8930
46 1 -1.3085 -2.2174 -2.9646
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000977394441.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:37:39
Heat of formation + Delta-G solvation = -62.218062 kcal
Electronic energy + Delta-G solvation = -26234.575554 eV
Core-core repulsion = 22738.672748 eV
Total energy + Delta-G solvation = -3495.902806 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.74920 -39.26959 -37.80140 -34.11688 -33.71639 -33.03889 -31.32494 -29.90567
-28.34410 -26.99773 -26.61955 -25.97129 -23.71282 -22.91163 -21.97374 -20.62712
-19.61151 -18.73757 -17.43169 -17.29040 -16.42373 -15.94464 -15.41966 -15.32304
-15.06037 -14.39826 -14.27117 -13.98278 -13.58117 -13.44587 -13.23337 -13.20324
-12.63984 -12.58306 -12.52824 -12.28756 -12.11059 -12.09657 -11.56178 -11.46951
-11.36314 -11.11639 -11.07935 -10.89981 -10.78139 -10.67099 -10.19879 -10.15617
-9.92398 -9.77109 -9.50419 -9.25784 -8.78224 -8.44148 -7.07423 -6.31668
-3.22802 2.74586 3.27734 3.46171 3.51458 3.66282 3.82440 4.25430
4.59073 4.62655 4.67247 4.71563 4.89051 4.94088 5.04572 5.08697
5.09841 5.15113 5.42555 5.47086 5.48115 5.52901 5.54480 5.62534
5.69909 5.74461 5.75330 5.84434 5.87766 5.94375 6.01276 6.03186
6.11043 6.15024 6.22565 6.33597 6.37508 6.54504 6.56208 6.58065
6.73150 6.86610 7.67188 7.74633 8.33124 8.38682 9.01965 9.57962
10.24943 11.15284
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.015641 B = 0.005797 C = 0.004974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1789.748238 B = 4828.885814 C = 5628.070656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.088 4.088
3 C -0.131 4.131
4 C 0.142 3.858
5 N -0.604 5.604
6 C -0.326 4.326
7 H 0.074 0.926
8 C -0.016 4.016
9 N -0.921 5.921
10 Si 1.059 2.941
11 H -0.293 1.293
12 H -0.286 1.286
13 H -0.299 1.299
14 C 0.099 3.901
15 C 0.138 3.862
16 H 0.096 0.904
17 N -0.700 5.700
18 C 0.527 3.473
19 O -0.541 6.541
20 C -0.115 4.115
21 C -0.135 4.135
22 C -0.143 4.143
23 C 0.045 3.955
24 O -0.372 6.372
25 C 0.061 3.939
26 H 0.057 0.943
27 H 0.054 0.946
28 H 0.052 0.948
29 H 0.062 0.938
30 H 0.053 0.947
31 H 0.059 0.941
32 H 0.027 0.973
33 H 0.030 0.970
34 H 0.262 0.738
35 H 0.039 0.961
36 H 0.062 0.938
37 H 0.401 0.599
38 H 0.065 0.935
39 H 0.070 0.930
40 H 0.068 0.932
41 H 0.101 0.899
42 H 0.082 0.918
43 H 0.092 0.908
44 H 0.060 0.940
45 H 0.099 0.901
46 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.080 4.420 -8.560 17.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.089 4.089
3 C -0.189 4.189
4 C 0.016 3.984
5 N -0.332 5.332
6 C -0.453 4.453
7 H 0.092 0.908
8 C -0.217 4.217
9 N -0.562 5.562
10 Si 0.892 3.108
11 H -0.221 1.221
12 H -0.213 1.213
13 H -0.226 1.226
14 C -0.027 4.027
15 C 0.032 3.968
16 H 0.114 0.886
17 N -0.350 5.350
18 C 0.312 3.688
19 O -0.418 6.418
20 C -0.118 4.118
21 C -0.193 4.193
22 C -0.181 4.181
23 C -0.031 4.031
24 O -0.290 6.290
25 C -0.017 4.017
26 H 0.076 0.924
27 H 0.073 0.927
28 H 0.071 0.929
29 H 0.081 0.919
30 H 0.072 0.928
31 H 0.078 0.922
32 H 0.045 0.955
33 H 0.048 0.952
34 H 0.072 0.928
35 H 0.056 0.944
36 H 0.080 0.920
37 H 0.236 0.764
38 H 0.084 0.916
39 H 0.089 0.911
40 H 0.087 0.913
41 H 0.120 0.880
42 H 0.100 0.900
43 H 0.111 0.889
44 H 0.079 0.921
45 H 0.117 0.883
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -13.371 4.637 -10.006 17.332
hybrid contribution -1.251 -0.111 1.438 1.909
sum -14.621 4.526 -8.568 17.540
Atomic orbital electron populations
1.21714 0.94134 1.01378 1.01610 1.21875 0.95360 0.95805 0.95845
1.21718 1.01797 0.93952 1.01388 1.21459 0.90410 0.92896 0.93632
1.44757 1.32304 1.51302 1.04804 1.19989 0.98945 1.22270 1.04119
0.90808 1.25829 0.94496 0.98000 1.03386 1.70912 1.45359 1.11702
1.28240 0.83901 0.75796 0.75649 0.75488 1.22062 1.21337 1.22635
1.22440 0.94170 0.99327 0.86797 1.22196 0.91092 0.86509 0.96972
0.88632 1.45790 1.45664 1.32752 1.10784 1.20137 0.82308 0.83900
0.82432 1.90654 1.43381 1.61409 1.46396 1.22156 0.95917 0.95423
0.98319 1.21829 1.02708 0.95895 0.98824 1.23091 0.98316 1.03637
0.93048 1.23512 0.88954 1.01601 0.89073 1.89110 1.44771 1.75349
1.19793 1.23445 0.88608 0.96936 0.92671 0.92362 0.92674 0.92861
0.91888 0.92817 0.92210 0.95493 0.95195 0.92768 0.94356 0.91975
0.76361 0.91593 0.91106 0.91341 0.88014 0.89978 0.88931 0.92132
0.88264 0.91887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.51 8.15 37.16 0.30 -1.21 16
2 C -0.09 -1.31 0.80 -152.67 -0.12 -1.43 16
3 C -0.13 -1.78 8.44 37.16 0.31 -1.47 16
4 C 0.14 2.66 6.41 -3.06 -0.02 2.64 16
5 N -0.60 -14.19 3.25 -169.93 -0.55 -14.74 16
6 C -0.33 -9.11 10.44 -15.06 -0.16 -9.27 16
7 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16
8 C -0.02 -0.48 5.43 -17.43 -0.09 -0.57 16
9 N -0.92 -28.74 13.70 55.49 0.76 -27.98 16
10 Si 1.06 27.25 24.69 -169.99 -4.20 23.06 16
11 H -0.29 -7.41 6.66 56.52 0.38 -7.04 16
12 H -0.29 -6.93 6.22 56.52 0.35 -6.58 16
13 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16
14 C 0.10 2.17 4.09 -2.41 -0.01 2.16 16
15 C 0.14 2.36 2.67 -65.67 -0.18 2.19 16
16 H 0.10 1.63 7.44 -51.93 -0.39 1.25 16
17 N -0.70 -10.81 4.40 -51.62 -0.23 -11.04 16
18 C 0.53 8.37 6.40 -10.98 -0.07 8.30 16
19 O -0.54 -10.34 14.92 5.56 0.08 -10.25 16
20 C -0.11 -1.46 0.89 -154.09 -0.14 -1.60 16
21 C -0.14 -1.69 8.18 37.15 0.30 -1.39 16
22 C -0.14 -1.71 6.34 -24.99 -0.16 -1.86 16
23 C 0.05 0.47 7.64 38.10 0.29 0.76 16
24 O -0.37 -4.49 11.65 -35.23 -0.41 -4.90 16
25 C 0.06 0.67 6.70 37.94 0.25 0.92 16
26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16
29 H 0.06 0.98 7.44 -51.93 -0.39 0.59 16
30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
32 H 0.03 0.50 7.82 -51.93 -0.41 0.09 16
33 H 0.03 0.58 7.84 -51.93 -0.41 0.17 16
34 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16
35 H 0.04 0.87 5.07 -51.93 -0.26 0.61 16
36 H 0.06 1.54 6.38 -51.93 -0.33 1.21 16
37 H 0.40 5.58 6.57 -40.82 -0.27 5.31 16
38 H 0.07 0.82 7.60 -51.93 -0.39 0.43 16
39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
41 H 0.10 1.38 6.50 -51.93 -0.34 1.04 16
42 H 0.08 0.89 7.73 -51.93 -0.40 0.49 16
43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16
44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
45 H 0.10 0.94 7.87 -51.93 -0.41 0.53 16
46 H 0.06 0.68 7.86 -51.93 -0.41 0.27 16
LS Contribution 349.58 15.07 5.27 5.27
Total: -1.00 -32.87 349.58 -6.51 -39.38
By element:
Atomic # 1 Polarization: 10.80 SS G_CDS: -7.76 Total: 3.03 kcal
Atomic # 6 Polarization: -2.34 SS G_CDS: 0.52 Total: -1.82 kcal
Atomic # 7 Polarization: -53.75 SS G_CDS: -0.02 Total: -53.77 kcal
Atomic # 8 Polarization: -14.83 SS G_CDS: -0.33 Total: -15.15 kcal
Atomic # 14 Polarization: 27.25 SS G_CDS: -4.20 Total: 23.06 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -32.87 -6.51 -39.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977394441.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.835 kcal
(2) G-P(sol) polarization free energy of solvation -32.868 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.703 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds