Wall clock time and date at job start Tue Mar 31 2020 03:37:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 110.64200 * 2 1
4 4 C 1.54323 * 110.71813 * 123.13719 * 2 1 3
5 5 N 1.47025 * 107.27145 * 140.55444 * 4 2 1
6 6 C 1.36932 * 125.64998 * 181.02568 * 5 4 2
7 7 H 1.08008 * 120.00153 * 14.86450 * 6 5 4
8 8 C 1.38810 * 119.99977 * 194.87317 * 6 5 4
9 9 N 1.31622 * 119.99683 * 203.65960 * 8 6 5
10 10 Si 1.86796 * 120.00122 * 23.65462 * 8 6 5
11 11 H 1.48505 * 109.47139 * 270.00361 * 10 8 6
12 12 H 1.48496 * 109.47202 * 30.00347 * 10 8 6
13 13 H 1.48497 * 109.47162 * 150.00474 * 10 8 6
14 14 C 1.47423 * 108.69906 * 1.28799 * 5 4 2
15 15 C 1.55125 * 104.72655 * 335.55056 * 14 5 4
16 16 H 1.09004 * 110.93923 * 155.28613 * 15 14 5
17 17 N 1.46495 * 111.19288 * 279.19414 * 15 14 5
18 18 C 1.34773 * 120.00018 * 267.18179 * 17 15 14
19 19 O 1.21282 * 120.00154 * 0.02562 * 18 17 15
20 20 C 1.50706 * 120.00105 * 179.97438 * 18 17 15
21 21 C 1.52990 * 110.45618 * 300.70342 * 20 18 17
22 22 C 1.54514 * 110.50704 * 178.09700 * 20 18 17
23 23 C 1.54796 * 103.91056 * 241.38831 * 22 20 18
24 24 O 1.44427 * 104.80598 * 335.92191 * 23 22 20
25 25 C 1.44420 * 105.27445 * 40.58504 * 24 23 22
26 26 H 1.09003 * 109.47355 * 298.31781 * 1 2 3
27 27 H 1.09001 * 109.47205 * 58.31214 * 1 2 3
28 28 H 1.08993 * 109.47506 * 178.31485 * 1 2 3
29 29 H 1.09000 * 109.47273 * 181.68744 * 3 2 1
30 30 H 1.09001 * 109.46864 * 301.68498 * 3 2 1
31 31 H 1.09000 * 109.47523 * 61.68145 * 3 2 1
32 32 H 1.09003 * 109.88183 * 21.13712 * 4 2 1
33 33 H 1.08997 * 109.88665 * 259.97326 * 4 2 1
34 34 H 0.96998 * 120.00502 * 354.68781 * 9 8 6
35 35 H 1.09002 * 110.36805 * 94.48322 * 14 5 4
36 36 H 1.09002 * 110.36520 * 216.80680 * 14 5 4
37 37 H 0.97003 * 120.00375 * 87.19009 * 17 15 14
38 38 H 1.09003 * 109.47195 * 59.30208 * 21 20 18
39 39 H 1.09000 * 109.47179 * 179.30197 * 21 20 18
40 40 H 1.09001 * 109.47609 * 299.29470 * 21 20 18
41 41 H 1.08998 * 110.51356 * 0.02562 * 22 20 18
42 42 H 1.09000 * 110.50942 * 122.71388 * 22 20 18
43 43 H 1.08999 * 110.31006 * 217.12295 * 23 22 20
44 44 H 1.09001 * 110.52983 * 94.83106 * 23 22 20
45 45 H 1.08997 * 110.37373 * 200.66010 * 25 24 23
46 46 H 1.09003 * 110.37225 * 78.31855 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0694 1.4318 0.0000
4 6 2.0760 -0.7890 1.2087
5 7 3.2444 -1.5495 0.7418
6 6 4.0041 -2.3944 1.5060
7 1 3.6362 -2.7353 2.4626
8 6 5.2472 -2.8126 1.0515
9 7 5.7700 -3.9331 1.5027
10 14 6.1780 -1.7854 -0.2006
11 1 5.8069 -2.2198 -1.5714
12 1 5.8286 -0.3530 -0.0237
13 1 7.6384 -1.9668 -0.0023
14 6 3.4665 -1.2468 -0.6839
15 6 2.0789 -0.7976 -1.2124
16 1 2.1844 -0.1556 -2.0870
17 7 1.2271 -1.9514 -1.5110
18 6 1.2025 -2.4666 -2.7561
19 8 1.8859 -1.9753 -3.6293
20 6 0.3266 -3.6539 -3.0632
21 6 0.7108 -4.8439 -2.1818
22 6 0.4307 -4.0313 -4.5579
23 6 -1.0121 -3.8505 -5.0888
24 8 -1.8543 -3.9926 -3.9242
25 6 -1.1626 -3.2932 -2.8668
26 1 -0.3634 0.4875 0.9047
27 1 -0.3634 0.5398 -0.8745
28 1 -0.3634 -1.0271 -0.0302
29 1 3.1587 1.4097 -0.0303
30 1 1.6923 1.9620 -0.8745
31 1 1.7413 1.9437 0.9047
32 1 1.3128 -1.4730 1.5802
33 1 2.3740 -0.0989 1.9979
34 1 5.3239 -4.4269 2.2084
35 1 4.1947 -0.4429 -0.7921
36 1 3.8030 -2.1384 -1.2130
37 1 0.6807 -2.3446 -0.8126
38 1 0.5990 -4.5701 -1.1327
39 1 0.0602 -5.6887 -2.4081
40 1 1.7468 -5.1210 -2.3767
41 1 1.1160 -3.3593 -5.0746
42 1 0.7535 -5.0664 -4.6689
43 1 -1.2450 -4.6227 -5.8220
44 1 -1.1364 -2.8609 -5.5285
45 1 -1.5111 -3.6372 -1.8930
46 1 -1.3085 -2.2174 -2.9646
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000977394441.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:37:38
Heat of formation + Delta-G solvation = -86.061762 kcal
Electronic energy + Delta-G solvation = -26235.609495 eV
Core-core repulsion = 22738.672748 eV
Total energy + Delta-G solvation = -3496.936747 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.92348 -40.51901 -39.05201 -35.85326 -34.99822 -34.20353 -33.27983 -30.86165
-29.84003 -28.06243 -27.64945 -27.57337 -25.20520 -23.92129 -23.28822 -22.37151
-20.88723 -20.01620 -19.38445 -18.48088 -17.61495 -17.06192 -16.88809 -16.49437
-16.27043 -15.83049 -15.69711 -15.28534 -15.09617 -15.02219 -14.57973 -14.37572
-14.16446 -13.86240 -13.61225 -13.34450 -13.15221 -13.14614 -13.07078 -13.02147
-12.72559 -12.40254 -12.28745 -12.06600 -11.92355 -11.84596 -11.80547 -11.65461
-11.48738 -11.34476 -10.82386 -10.78341 -10.73311 -10.09310 -9.13213 -8.61001
-5.45556 1.34904 1.41746 1.48611 1.58929 2.07292 2.45630 2.94043
3.03608 3.27045 3.34045 3.41668 3.63370 3.72061 3.79145 3.92240
3.97123 4.16497 4.21264 4.26163 4.31256 4.47558 4.51699 4.60764
4.63740 4.70725 4.73299 4.78827 4.81305 4.82887 4.86597 4.92819
4.96088 5.02615 5.05548 5.10642 5.13212 5.20961 5.32005 5.41378
5.52770 5.59705 5.70610 6.11178 6.46798 6.80480 7.13657 7.47539
8.12286 8.85813
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.015641 B = 0.005797 C = 0.004974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1789.748238 B = 4828.885814 C = 5628.070656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.072 4.072
3 C -0.131 4.131
4 C 0.136 3.864
5 N -0.619 5.619
6 C -0.305 4.305
7 H 0.050 0.950
8 C -0.070 4.070
9 N -0.959 5.959
10 Si 1.095 2.905
11 H -0.293 1.293
12 H -0.264 1.264
13 H -0.303 1.303
14 C 0.095 3.905
15 C 0.147 3.853
16 H 0.101 0.899
17 N -0.694 5.694
18 C 0.524 3.476
19 O -0.576 6.576
20 C -0.112 4.112
21 C -0.132 4.132
22 C -0.145 4.145
23 C 0.048 3.952
24 O -0.381 6.381
25 C 0.066 3.934
26 H 0.075 0.925
27 H 0.072 0.928
28 H 0.059 0.941
29 H 0.038 0.962
30 H 0.077 0.923
31 H 0.077 0.923
32 H 0.035 0.965
33 H 0.029 0.971
34 H 0.250 0.750
35 H 0.035 0.965
36 H 0.027 0.973
37 H 0.409 0.591
38 H 0.065 0.935
39 H 0.091 0.909
40 H 0.043 0.957
41 H 0.083 0.917
42 H 0.089 0.911
43 H 0.114 0.886
44 H 0.065 0.935
45 H 0.119 0.881
46 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.985 6.000 -9.407 21.165
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.073 4.073
3 C -0.188 4.188
4 C 0.012 3.988
5 N -0.346 5.346
6 C -0.434 4.434
7 H 0.068 0.932
8 C -0.265 4.265
9 N -0.603 5.603
10 Si 0.924 3.076
11 H -0.220 1.220
12 H -0.189 1.189
13 H -0.232 1.232
14 C -0.031 4.031
15 C 0.040 3.960
16 H 0.119 0.881
17 N -0.345 5.345
18 C 0.311 3.689
19 O -0.456 6.456
20 C -0.116 4.116
21 C -0.189 4.189
22 C -0.183 4.183
23 C -0.028 4.028
24 O -0.300 6.300
25 C -0.012 4.012
26 H 0.094 0.906
27 H 0.091 0.909
28 H 0.077 0.923
29 H 0.057 0.943
30 H 0.096 0.904
31 H 0.096 0.904
32 H 0.053 0.947
33 H 0.047 0.953
34 H 0.060 0.940
35 H 0.052 0.948
36 H 0.045 0.955
37 H 0.247 0.753
38 H 0.084 0.916
39 H 0.110 0.890
40 H 0.063 0.937
41 H 0.101 0.899
42 H 0.108 0.892
43 H 0.132 0.868
44 H 0.084 0.916
45 H 0.137 0.863
46 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -16.334 6.247 -10.840 20.576
hybrid contribution -0.396 -0.613 1.745 1.892
sum -16.730 5.634 -9.095 19.858
Atomic orbital electron populations
1.21706 0.90787 1.02433 1.03396 1.21854 0.97810 0.95547 0.92127
1.21750 1.00291 0.93272 1.03528 1.21695 0.88666 0.92986 0.95468
1.44787 1.32848 1.51505 1.05491 1.19904 0.98793 1.21569 1.03143
0.93196 1.26753 0.95907 0.98471 1.05377 1.71000 1.46300 1.13388
1.29614 0.83427 0.74502 0.75779 0.73922 1.22044 1.18939 1.23164
1.22450 0.97283 0.97606 0.85728 1.22047 0.88798 0.87160 0.97949
0.88067 1.45763 1.45190 1.32437 1.11077 1.20719 0.82017 0.84200
0.81969 1.90639 1.44880 1.62621 1.47441 1.22174 0.96683 0.93845
0.98850 1.21812 1.01693 0.96628 0.98792 1.23103 0.99218 1.03577
0.92418 1.23592 0.87442 1.02765 0.88996 1.89107 1.45057 1.75530
1.20314 1.23497 0.86814 0.97386 0.93457 0.90600 0.90893 0.92255
0.94288 0.90382 0.90416 0.94703 0.95330 0.94011 0.94780 0.95519
0.75337 0.91629 0.89044 0.93736 0.89893 0.89232 0.86803 0.91638
0.86327 0.91258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.34 8.15 71.98 0.59 -1.76 16
2 C -0.07 -1.93 0.80 -50.99 -0.04 -1.98 16
3 C -0.13 -3.11 8.44 71.98 0.61 -2.51 16
4 C 0.14 4.87 6.41 86.73 0.56 5.43 16
5 N -0.62 -28.93 3.25 -691.55 -2.25 -31.18 16
6 C -0.31 -17.40 10.44 84.03 0.88 -16.52 16
7 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16
8 C -0.07 -4.23 5.43 84.86 0.46 -3.77 16
9 N -0.96 -61.97 13.70 21.65 0.30 -61.68 16
10 Si 1.10 56.50 24.69 68.60 1.69 58.19 16
11 H -0.29 -14.95 6.66 99.48 0.66 -14.29 16
12 H -0.26 -12.45 6.22 99.48 0.62 -11.84 16
13 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16
14 C 0.10 4.16 4.09 86.93 0.36 4.51 16
15 C 0.15 4.77 2.67 46.46 0.12 4.89 16
16 H 0.10 3.25 7.44 -2.39 -0.02 3.24 16
17 N -0.69 -20.31 4.40 -435.61 -1.92 -22.22 16
18 C 0.52 16.10 6.40 87.66 0.56 16.66 16
19 O -0.58 -21.84 14.92 -3.04 -0.05 -21.88 16
20 C -0.11 -2.68 0.89 -51.91 -0.05 -2.72 16
21 C -0.13 -3.16 8.18 71.98 0.59 -2.57 16
22 C -0.15 -3.28 6.34 31.72 0.20 -3.08 16
23 C 0.05 0.89 7.64 72.60 0.55 1.44 16
24 O -0.38 -8.05 11.65 -148.98 -1.74 -9.78 16
25 C 0.07 1.25 6.70 72.49 0.49 1.74 16
26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
28 H 0.06 1.05 6.34 -2.39 -0.02 1.03 16
29 H 0.04 1.11 7.44 -2.39 -0.02 1.09 16
30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
32 H 0.03 1.20 7.82 -2.39 -0.02 1.18 16
33 H 0.03 1.05 7.84 -2.39 -0.02 1.03 16
34 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16
35 H 0.03 1.53 5.07 -2.39 -0.01 1.52 16
36 H 0.03 1.35 6.38 -2.39 -0.02 1.33 16
37 H 0.41 10.48 6.57 -92.71 -0.61 9.87 16
38 H 0.06 1.55 7.60 -2.39 -0.02 1.53 16
39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16
40 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16
41 H 0.08 2.22 6.50 -2.39 -0.02 2.20 16
42 H 0.09 1.85 7.73 -2.39 -0.02 1.83 16
43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16
44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
45 H 0.12 1.80 7.87 -2.39 -0.02 1.78 16
46 H 0.07 1.26 7.86 -2.39 -0.02 1.24 16
Total: -1.00 -73.70 349.58 2.11 -71.60
By element:
Atomic # 1 Polarization: 16.99 SS G_CDS: 0.19 Total: 17.17 kcal
Atomic # 6 Polarization: -6.09 SS G_CDS: 5.87 Total: -0.22 kcal
Atomic # 7 Polarization: -111.21 SS G_CDS: -3.86 Total: -115.08 kcal
Atomic # 8 Polarization: -29.88 SS G_CDS: -1.78 Total: -31.66 kcal
Atomic # 14 Polarization: 56.50 SS G_CDS: 1.69 Total: 58.19 kcal
Total: -73.70 2.11 -71.60 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977394441.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.466 kcal
(2) G-P(sol) polarization free energy of solvation -73.702 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.168 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.595 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds