Wall clock time and date at job start Tue Mar 31 2020 03:35:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50705 * 109.52206 * 2 1
4 4 O 1.21284 * 119.99972 * 128.15199 * 3 2 1
5 5 N 1.34773 * 119.99812 * 308.15040 * 3 2 1
6 6 C 1.48212 * 119.97423 * 356.86589 * 5 3 2
7 7 C 1.47131 * 110.34322 * 102.46212 * 6 5 3
8 8 C 1.53803 * 111.83760 * 58.29583 * 7 6 5
9 9 N 1.43459 * 108.00926 * 281.64151 * 8 7 6
10 10 C 1.36933 * 118.94686 * 273.63747 * 9 8 7
11 11 H 1.07998 * 119.99746 * 25.78368 * 10 9 8
12 12 C 1.38815 * 120.00147 * 205.79187 * 10 9 8
13 13 N 1.31617 * 119.99833 * 12.99921 * 12 10 9
14 14 Si 1.86801 * 119.99735 * 192.99697 * 12 10 9
15 15 H 1.48497 * 109.47260 * 60.00363 * 14 12 10
16 16 H 1.48497 * 109.46559 * 179.97438 * 14 12 10
17 17 H 1.48498 * 109.47261 * 299.99692 * 14 12 10
18 18 C 1.48906 * 122.08234 * 93.55988 * 9 8 7
19 19 C 1.43620 * 119.97049 * 176.84671 * 5 3 2
20 20 C 1.53177 * 109.51909 * 120.12068 * 2 1 3
21 21 C 1.53306 * 108.96723 * 176.88990 * 20 2 1
22 22 C 1.53092 * 109.19745 * 303.06320 * 21 20 2
23 23 O 1.42897 * 109.41522 * 57.60438 * 22 21 20
24 24 C 1.42908 * 114.09910 * 298.84145 * 23 22 21
25 25 H 1.09004 * 109.46710 * 77.61295 * 1 2 3
26 26 H 1.08997 * 109.47464 * 197.60847 * 1 2 3
27 27 H 1.09003 * 109.47191 * 317.61447 * 1 2 3
28 28 H 1.08998 * 109.32277 * 342.19774 * 6 5 3
29 29 H 1.08999 * 109.18048 * 222.64603 * 6 5 3
30 30 H 1.08998 * 109.01436 * 297.68969 * 7 6 5
31 31 H 1.09003 * 108.94798 * 178.85724 * 7 6 5
32 32 H 1.08993 * 109.76438 * 41.29344 * 8 7 6
33 33 H 1.09009 * 109.76074 * 162.00328 * 8 7 6
34 34 H 0.97001 * 119.99657 * 180.02562 * 13 12 10
35 35 H 1.08996 * 109.48714 * 200.70456 * 18 9 8
36 36 H 1.08998 * 109.44166 * 80.68825 * 18 9 8
37 37 H 1.09007 * 108.87398 * 31.47137 * 19 5 3
38 38 H 1.09000 * 108.88024 * 149.90786 * 19 5 3
39 39 H 1.09001 * 109.54880 * 296.81939 * 20 2 1
40 40 H 1.09005 * 109.54141 * 57.08496 * 20 2 1
41 41 H 1.09006 * 109.50819 * 183.14571 * 21 20 2
42 42 H 1.09003 * 109.55843 * 63.01163 * 21 20 2
43 43 H 1.09003 * 109.47440 * 297.62097 * 22 21 20
44 44 H 1.09002 * 109.48278 * 177.59602 * 22 21 20
45 45 H 1.08996 * 109.48189 * 301.17864 * 24 23 22
46 46 H 1.08999 * 109.48209 * 181.14181 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0336 1.4204 0.0000
4 8 2.8478 1.7751 0.8260
5 7 1.5792 2.2964 -0.9179
6 6 0.6374 1.8452 -1.9696
7 6 -0.7340 2.2661 -1.6428
8 6 -0.8428 3.7926 -1.4893
9 7 -0.3293 4.1461 -0.1972
10 6 -1.1707 4.1111 0.8826
11 1 -2.0321 3.4598 0.8750
12 6 -0.9165 4.9130 1.9868
13 7 -0.0314 5.8837 1.9054
14 14 -1.8307 4.6142 3.5882
15 1 -1.5473 3.2388 4.0709
16 1 -1.3808 5.5978 4.6058
17 1 -3.2901 4.7684 3.3613
18 6 1.0899 4.5481 0.0070
19 6 2.0077 3.6666 -0.8758
20 6 2.0418 -0.7245 1.2488
21 6 3.5728 -0.7855 1.1972
22 6 4.0056 -1.4793 -0.0970
23 8 3.4695 -0.7724 -1.2172
24 6 2.0416 -0.7243 -1.2479
25 1 -0.3633 0.2205 -1.0038
26 1 -0.3634 -0.9795 0.3109
27 1 -0.3634 0.7591 0.6928
28 1 0.6732 0.7583 -2.0435
29 1 0.9310 2.2815 -2.9243
30 1 -1.0378 1.7929 -0.7091
31 1 -1.4033 1.9409 -2.4394
32 1 -0.2567 4.2838 -2.2659
33 1 -1.8865 4.0974 -1.5671
34 1 0.1465 6.4438 2.6772
35 1 1.3579 4.4161 1.0552
36 1 1.2141 5.5946 -0.2712
37 1 3.0224 3.7067 -0.4795
38 1 2.0114 4.0663 -1.8898
39 1 1.7268 -0.1818 2.1401
40 1 1.6375 -1.7365 1.2746
41 1 3.9438 -1.3483 2.0538
42 1 3.9793 0.2256 1.2219
43 1 3.6337 -2.5040 -0.1020
44 1 5.0938 -1.4872 -0.1589
45 1 1.6441 -1.7389 -1.2680
46 1 1.7150 -0.1881 -2.1389
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000983025485.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:40
Heat of formation + Delta-G solvation = -27.907095 kcal
Electronic energy + Delta-G solvation = -27244.140010 eV
Core-core repulsion = 23749.725038 eV
Total energy + Delta-G solvation = -3494.414971 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.93604 -38.41043 -36.84093 -34.86588 -34.12338 -32.25889 -32.03079 -30.64332
-27.67186 -26.91814 -25.67370 -24.98384 -23.82661 -22.86310 -21.99476 -20.58529
-19.56048 -18.17845 -16.91445 -16.53813 -16.24027 -15.77334 -15.50640 -15.02597
-14.76691 -14.17239 -14.08684 -13.92307 -13.64851 -13.27411 -13.20325 -12.73317
-12.53529 -12.33665 -12.15301 -11.95833 -11.85406 -11.62801 -11.45525 -11.18665
-10.89427 -10.83956 -10.67631 -10.59577 -10.43708 -10.19988 -10.17156 -10.08714
-9.73788 -9.62473 -9.45367 -8.82997 -8.41263 -7.89245 -6.63102 -5.72751
-3.16578 3.21546 3.39812 3.46256 3.46513 3.60077 3.90813 4.53868
4.57631 4.73610 4.88705 5.04181 5.10086 5.16160 5.32030 5.38078
5.41663 5.47639 5.54230 5.61144 5.64421 5.68269 5.80411 5.82359
5.89942 5.94233 6.02367 6.08377 6.21336 6.25241 6.33079 6.37507
6.47341 6.50078 6.52283 6.67065 6.79624 7.01664 7.11231 7.18698
7.54108 7.71089 7.83809 8.06347 8.50741 8.85982 9.26665 9.94843
10.40958 11.34874
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.018417 B = 0.006182 C = 0.005612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1519.944084 B = 4527.862694 C = 4988.045355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.114 4.114
3 C 0.538 3.462
4 O -0.540 6.540
5 N -0.579 5.579
6 C 0.106 3.894
7 C -0.189 4.189
8 C 0.164 3.836
9 N -0.589 5.589
10 C -0.256 4.256
11 H 0.062 0.938
12 C 0.006 3.994
13 N -0.905 5.905
14 Si 0.899 3.101
15 H -0.285 1.285
16 H -0.291 1.291
17 H -0.284 1.284
18 C 0.169 3.831
19 C 0.090 3.910
20 C -0.093 4.093
21 C -0.170 4.170
22 C 0.062 3.938
23 O -0.378 6.378
24 C 0.065 3.935
25 H 0.081 0.919
26 H 0.058 0.942
27 H 0.078 0.922
28 H 0.083 0.917
29 H 0.063 0.937
30 H 0.083 0.917
31 H 0.055 0.945
32 H 0.032 0.968
33 H 0.044 0.956
34 H 0.254 0.746
35 H 0.078 0.922
36 H 0.037 0.963
37 H 0.070 0.930
38 H 0.053 0.947
39 H 0.074 0.926
40 H 0.062 0.938
41 H 0.066 0.934
42 H 0.106 0.894
43 H 0.044 0.956
44 H 0.089 0.911
45 H 0.057 0.943
46 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.273 -14.118 -8.059 16.582
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.117 4.117
3 C 0.326 3.674
4 O -0.418 6.418
5 N -0.310 5.310
6 C -0.016 4.016
7 C -0.230 4.230
8 C 0.035 3.965
9 N -0.311 5.311
10 C -0.385 4.385
11 H 0.080 0.920
12 C -0.192 4.192
13 N -0.550 5.550
14 Si 0.730 3.270
15 H -0.212 1.212
16 H -0.216 1.216
17 H -0.210 1.210
18 C 0.043 3.957
19 C -0.035 4.035
20 C -0.131 4.131
21 C -0.208 4.208
22 C -0.015 4.015
23 O -0.297 6.297
24 C -0.012 4.012
25 H 0.099 0.901
26 H 0.077 0.923
27 H 0.097 0.903
28 H 0.101 0.899
29 H 0.081 0.919
30 H 0.101 0.899
31 H 0.073 0.927
32 H 0.050 0.950
33 H 0.063 0.937
34 H 0.064 0.936
35 H 0.096 0.904
36 H 0.055 0.945
37 H 0.088 0.912
38 H 0.071 0.929
39 H 0.093 0.907
40 H 0.081 0.919
41 H 0.084 0.916
42 H 0.124 0.876
43 H 0.062 0.938
44 H 0.108 0.892
45 H 0.075 0.925
46 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 3.896 -13.665 -7.650 16.138
hybrid contribution -0.825 -0.215 1.174 1.451
sum 3.071 -13.880 -6.476 15.622
Atomic orbital electron populations
1.22479 0.91978 1.02811 1.04314 1.21401 0.97803 0.94308 0.98203
1.19918 0.80759 0.86349 0.80376 1.90548 1.34000 1.79116 1.38155
1.47220 1.45229 1.09220 1.29342 1.21222 0.90465 0.99613 0.90283
1.22299 0.95377 1.03056 1.02277 1.20220 0.97344 0.90671 0.88250
1.43654 1.05885 1.78933 1.02594 1.19057 1.06967 1.17856 0.94659
0.92006 1.25001 0.99059 0.95802 0.99365 1.69988 1.36590 1.18882
1.29519 0.86421 0.79306 0.77437 0.83876 1.21184 1.21643 1.21012
1.21864 0.81414 0.93464 0.98932 1.21978 0.99633 0.81563 1.00334
1.21427 0.95712 0.99036 0.96890 1.22493 0.96458 1.04632 0.97190
1.22592 0.98738 0.93934 0.86188 1.87953 1.19652 1.76591 1.45456
1.22971 0.81707 0.99452 0.97077 0.90058 0.92319 0.90272 0.89899
0.91895 0.89892 0.92668 0.94987 0.93734 0.93632 0.90386 0.94464
0.91196 0.92860 0.90731 0.91939 0.91584 0.87618 0.93802 0.89243
0.92459 0.87726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.18 6.77 37.16 0.25 -1.93 16
2 C -0.11 -1.69 0.50 -155.52 -0.08 -1.77 16
3 C 0.54 10.28 5.90 -10.98 -0.06 10.22 16
4 O -0.54 -12.20 13.13 5.55 0.07 -12.13 16
5 N -0.58 -10.57 2.45 -176.66 -0.43 -11.01 16
6 C 0.11 1.54 4.57 -5.92 -0.03 1.51 16
7 C -0.19 -2.98 4.71 -29.13 -0.14 -3.12 16
8 C 0.16 3.21 5.63 -5.23 -0.03 3.18 16
9 N -0.59 -14.22 2.54 -171.95 -0.44 -14.65 16
10 C -0.26 -6.89 9.28 -15.06 -0.14 -7.03 16
11 H 0.06 1.64 7.86 -52.49 -0.41 1.22 16
12 C 0.01 0.18 4.98 -17.43 -0.09 0.09 16
13 N -0.91 -26.61 10.86 55.49 0.60 -26.01 16
14 Si 0.90 22.23 29.57 -169.99 -5.03 17.21 16
15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
16 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16
17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
18 C 0.17 4.10 5.17 -1.72 -0.01 4.09 16
19 C 0.09 1.80 5.28 -4.58 -0.02 1.77 16
20 C -0.09 -1.34 4.43 -26.48 -0.12 -1.45 16
21 C -0.17 -2.39 5.81 -26.53 -0.15 -2.54 16
22 C 0.06 0.77 6.84 37.20 0.25 1.02 16
23 O -0.38 -5.49 10.45 -35.23 -0.37 -5.86 16
24 C 0.06 0.82 5.25 37.20 0.20 1.01 16
25 H 0.08 1.00 3.81 -51.93 -0.20 0.80 16
26 H 0.06 0.67 7.98 -51.93 -0.41 0.25 16
27 H 0.08 1.37 7.15 -51.93 -0.37 1.00 16
28 H 0.08 1.01 2.42 -51.93 -0.13 0.88 16
29 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16
30 H 0.08 1.46 4.78 -51.93 -0.25 1.21 16
31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16
33 H 0.04 0.89 8.02 -51.92 -0.42 0.48 16
34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16
35 H 0.08 2.22 6.53 -51.93 -0.34 1.88 16
36 H 0.04 0.96 7.99 -51.93 -0.41 0.55 16
37 H 0.07 1.45 7.33 -51.92 -0.38 1.07 16
38 H 0.05 0.95 7.73 -51.93 -0.40 0.54 16
39 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16
40 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16
41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
42 H 0.11 1.86 5.54 -51.93 -0.29 1.57 16
43 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
46 H 0.11 1.22 5.10 -51.93 -0.27 0.96 16
LS Contribution 328.60 15.07 4.95 4.95
Total: -1.00 -31.90 328.60 -7.98 -39.88
By element:
Atomic # 1 Polarization: 9.73 SS G_CDS: -7.18 Total: 2.55 kcal
Atomic # 6 Polarization: 5.23 SS G_CDS: -0.17 Total: 5.06 kcal
Atomic # 7 Polarization: -51.40 SS G_CDS: -0.27 Total: -51.67 kcal
Atomic # 8 Polarization: -17.69 SS G_CDS: -0.30 Total: -17.98 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.21 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -31.90 -7.98 -39.88 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000983025485.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.971 kcal
(2) G-P(sol) polarization free energy of solvation -31.896 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.907 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds