Wall clock time and date at job start Tue Mar 31 2020 03:35:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50705 * 109.52206 * 2 1
4 4 O 1.21284 * 119.99972 * 128.15199 * 3 2 1
5 5 N 1.34773 * 119.99812 * 308.15040 * 3 2 1
6 6 C 1.48212 * 119.97423 * 356.86589 * 5 3 2
7 7 C 1.47131 * 110.34322 * 102.46212 * 6 5 3
8 8 C 1.53803 * 111.83760 * 58.29583 * 7 6 5
9 9 N 1.43459 * 108.00926 * 281.64151 * 8 7 6
10 10 C 1.36933 * 118.94686 * 273.63747 * 9 8 7
11 11 H 1.07998 * 119.99746 * 25.78368 * 10 9 8
12 12 C 1.38815 * 120.00147 * 205.79187 * 10 9 8
13 13 N 1.31617 * 119.99833 * 12.99921 * 12 10 9
14 14 Si 1.86801 * 119.99735 * 192.99697 * 12 10 9
15 15 H 1.48497 * 109.47260 * 60.00363 * 14 12 10
16 16 H 1.48497 * 109.46559 * 179.97438 * 14 12 10
17 17 H 1.48498 * 109.47261 * 299.99692 * 14 12 10
18 18 C 1.48906 * 122.08234 * 93.55988 * 9 8 7
19 19 C 1.43620 * 119.97049 * 176.84671 * 5 3 2
20 20 C 1.53177 * 109.51909 * 120.12068 * 2 1 3
21 21 C 1.53306 * 108.96723 * 176.88990 * 20 2 1
22 22 C 1.53092 * 109.19745 * 303.06320 * 21 20 2
23 23 O 1.42897 * 109.41522 * 57.60438 * 22 21 20
24 24 C 1.42908 * 114.09910 * 298.84145 * 23 22 21
25 25 H 1.09004 * 109.46710 * 77.61295 * 1 2 3
26 26 H 1.08997 * 109.47464 * 197.60847 * 1 2 3
27 27 H 1.09003 * 109.47191 * 317.61447 * 1 2 3
28 28 H 1.08998 * 109.32277 * 342.19774 * 6 5 3
29 29 H 1.08999 * 109.18048 * 222.64603 * 6 5 3
30 30 H 1.08998 * 109.01436 * 297.68969 * 7 6 5
31 31 H 1.09003 * 108.94798 * 178.85724 * 7 6 5
32 32 H 1.08993 * 109.76438 * 41.29344 * 8 7 6
33 33 H 1.09009 * 109.76074 * 162.00328 * 8 7 6
34 34 H 0.97001 * 119.99657 * 180.02562 * 13 12 10
35 35 H 1.08996 * 109.48714 * 200.70456 * 18 9 8
36 36 H 1.08998 * 109.44166 * 80.68825 * 18 9 8
37 37 H 1.09007 * 108.87398 * 31.47137 * 19 5 3
38 38 H 1.09000 * 108.88024 * 149.90786 * 19 5 3
39 39 H 1.09001 * 109.54880 * 296.81939 * 20 2 1
40 40 H 1.09005 * 109.54141 * 57.08496 * 20 2 1
41 41 H 1.09006 * 109.50819 * 183.14571 * 21 20 2
42 42 H 1.09003 * 109.55843 * 63.01163 * 21 20 2
43 43 H 1.09003 * 109.47440 * 297.62097 * 22 21 20
44 44 H 1.09002 * 109.48278 * 177.59602 * 22 21 20
45 45 H 1.08996 * 109.48189 * 301.17864 * 24 23 22
46 46 H 1.08999 * 109.48209 * 181.14181 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0336 1.4204 0.0000
4 8 2.8478 1.7751 0.8260
5 7 1.5792 2.2964 -0.9179
6 6 0.6374 1.8452 -1.9696
7 6 -0.7340 2.2661 -1.6428
8 6 -0.8428 3.7926 -1.4893
9 7 -0.3293 4.1461 -0.1972
10 6 -1.1707 4.1111 0.8826
11 1 -2.0321 3.4598 0.8750
12 6 -0.9165 4.9130 1.9868
13 7 -0.0314 5.8837 1.9054
14 14 -1.8307 4.6142 3.5882
15 1 -1.5473 3.2388 4.0709
16 1 -1.3808 5.5978 4.6058
17 1 -3.2901 4.7684 3.3613
18 6 1.0899 4.5481 0.0070
19 6 2.0077 3.6666 -0.8758
20 6 2.0418 -0.7245 1.2488
21 6 3.5728 -0.7855 1.1972
22 6 4.0056 -1.4793 -0.0970
23 8 3.4695 -0.7724 -1.2172
24 6 2.0416 -0.7243 -1.2479
25 1 -0.3633 0.2205 -1.0038
26 1 -0.3634 -0.9795 0.3109
27 1 -0.3634 0.7591 0.6928
28 1 0.6732 0.7583 -2.0435
29 1 0.9310 2.2815 -2.9243
30 1 -1.0378 1.7929 -0.7091
31 1 -1.4033 1.9409 -2.4394
32 1 -0.2567 4.2838 -2.2659
33 1 -1.8865 4.0974 -1.5671
34 1 0.1465 6.4438 2.6772
35 1 1.3579 4.4161 1.0552
36 1 1.2141 5.5946 -0.2712
37 1 3.0224 3.7067 -0.4795
38 1 2.0114 4.0663 -1.8898
39 1 1.7268 -0.1818 2.1401
40 1 1.6375 -1.7365 1.2746
41 1 3.9438 -1.3483 2.0538
42 1 3.9793 0.2256 1.2219
43 1 3.6337 -2.5040 -0.1020
44 1 5.0938 -1.4872 -0.1589
45 1 1.6441 -1.7389 -1.2680
46 1 1.7150 -0.1881 -2.1389
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000983025485.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:39
Heat of formation + Delta-G solvation = -49.245713 kcal
Electronic energy + Delta-G solvation = -27245.065321 eV
Core-core repulsion = 23749.725038 eV
Total energy + Delta-G solvation = -3495.340283 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-42.20685 -39.67658 -38.38168 -36.42323 -35.47584 -33.86159 -33.37122 -32.30459
-29.40174 -27.97992 -27.20139 -26.22207 -25.48067 -24.36351 -23.16618 -21.84497
-21.31578 -19.52984 -18.66406 -17.91666 -17.57581 -17.04439 -16.76005 -16.55290
-16.13529 -15.75452 -15.55860 -15.29529 -15.16191 -14.77120 -14.71787 -14.10105
-13.84059 -13.66252 -13.58525 -13.22236 -13.18979 -13.02441 -12.90861 -12.83345
-12.70465 -12.39220 -12.22419 -12.07520 -11.93009 -11.72204 -11.62385 -11.49492
-11.33338 -11.13178 -10.55760 -10.51460 -10.17257 -9.42651 -8.63961 -7.84852
-5.29676 1.38138 1.42292 1.46875 1.80016 2.25253 2.48989 2.93907
3.30014 3.42762 3.63041 3.72867 3.81741 3.94006 4.01679 4.11271
4.29684 4.31711 4.35895 4.45895 4.53926 4.54492 4.58901 4.67520
4.69612 4.72371 4.82211 4.85862 4.87870 4.95604 4.99077 5.01373
5.09065 5.22346 5.29504 5.32371 5.34237 5.50890 5.58452 5.64709
5.70842 5.93059 6.24532 6.39965 6.63839 7.16963 7.41818 7.95105
8.37753 9.20004
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.018417 B = 0.006182 C = 0.005612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1519.944084 B = 4527.862694 C = 4988.045355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.110 4.110
3 C 0.522 3.478
4 O -0.590 6.590
5 N -0.584 5.584
6 C 0.099 3.901
7 C -0.177 4.177
8 C 0.153 3.847
9 N -0.601 5.601
10 C -0.249 4.249
11 H 0.067 0.933
12 C -0.056 4.056
13 N -0.939 5.939
14 Si 0.956 3.044
15 H -0.287 1.287
16 H -0.299 1.299
17 H -0.268 1.268
18 C 0.183 3.817
19 C 0.104 3.896
20 C -0.095 4.095
21 C -0.170 4.170
22 C 0.063 3.937
23 O -0.400 6.400
24 C 0.066 3.934
25 H 0.100 0.900
26 H 0.089 0.911
27 H 0.034 0.966
28 H 0.116 0.884
29 H 0.089 0.911
30 H 0.065 0.935
31 H 0.100 0.900
32 H 0.046 0.954
33 H 0.039 0.961
34 H 0.244 0.756
35 H 0.024 0.976
36 H 0.011 0.989
37 H 0.052 0.948
38 H 0.084 0.916
39 H 0.038 0.962
40 H 0.100 0.900
41 H 0.082 0.918
42 H 0.061 0.939
43 H 0.077 0.923
44 H 0.097 0.903
45 H 0.096 0.904
46 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.977 -17.773 -10.680 20.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.113 4.113
3 C 0.312 3.688
4 O -0.471 6.471
5 N -0.314 5.314
6 C -0.021 4.021
7 C -0.217 4.217
8 C 0.026 3.974
9 N -0.323 5.323
10 C -0.380 4.380
11 H 0.085 0.915
12 C -0.250 4.250
13 N -0.587 5.587
14 Si 0.785 3.215
15 H -0.214 1.214
16 H -0.225 1.225
17 H -0.194 1.194
18 C 0.057 3.943
19 C -0.022 4.022
20 C -0.133 4.133
21 C -0.208 4.208
22 C -0.013 4.013
23 O -0.319 6.319
24 C -0.010 4.010
25 H 0.119 0.881
26 H 0.108 0.892
27 H 0.053 0.947
28 H 0.134 0.866
29 H 0.107 0.893
30 H 0.084 0.916
31 H 0.119 0.881
32 H 0.064 0.936
33 H 0.057 0.943
34 H 0.053 0.947
35 H 0.043 0.957
36 H 0.029 0.971
37 H 0.070 0.930
38 H 0.102 0.898
39 H 0.057 0.943
40 H 0.118 0.882
41 H 0.100 0.900
42 H 0.079 0.921
43 H 0.095 0.905
44 H 0.115 0.885
45 H 0.114 0.886
46 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 2.555 -17.359 -10.331 20.361
hybrid contribution -0.423 0.928 1.958 2.208
sum 2.132 -16.430 -8.374 18.564
Atomic orbital electron populations
1.22412 0.90841 1.03137 1.04344 1.21476 0.98469 0.91404 0.99998
1.20929 0.80015 0.88360 0.79492 1.90542 1.36175 1.80384 1.39967
1.47435 1.45744 1.08059 1.30176 1.21577 0.88686 1.01862 0.89933
1.22096 0.97240 0.99182 1.03166 1.20513 0.96976 0.93662 0.86205
1.43828 1.05421 1.79173 1.03906 1.19393 1.06721 1.16419 0.95436
0.91492 1.25724 1.00565 0.96305 1.02423 1.70167 1.38652 1.20232
1.29601 0.85507 0.78970 0.76642 0.80396 1.21393 1.22533 1.19369
1.21450 0.82928 0.93208 0.96717 1.21588 0.97368 0.82631 1.00573
1.21479 0.96072 1.00379 0.95353 1.22426 0.96267 1.02662 0.99432
1.22698 0.99419 0.94874 0.84288 1.87928 1.20763 1.77226 1.46000
1.23125 0.80987 1.01255 0.95658 0.88140 0.89187 0.94691 0.86637
0.89259 0.91648 0.88137 0.93586 0.94257 0.94660 0.95715 0.97148
0.92971 0.89819 0.94312 0.88201 0.89967 0.92071 0.90512 0.88495
0.88600 0.86506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.67 6.77 71.98 0.49 -3.18 16
2 C -0.11 -3.02 0.50 -52.84 -0.03 -3.05 16
3 C 0.52 20.03 5.90 87.66 0.52 20.55 16
4 O -0.59 -28.22 13.13 -3.04 -0.04 -28.26 16
5 N -0.58 -20.79 2.45 -831.20 -2.04 -22.83 16
6 C 0.10 2.48 4.57 84.22 0.39 2.87 16
7 C -0.18 -4.91 4.71 29.04 0.14 -4.78 16
8 C 0.15 5.73 5.63 87.21 0.49 6.23 16
9 N -0.60 -29.47 2.54 -697.94 -1.77 -31.24 16
10 C -0.25 -13.70 9.28 84.03 0.78 -12.92 16
11 H 0.07 3.55 7.86 -2.91 -0.02 3.53 16
12 C -0.06 -3.24 4.98 84.86 0.42 -2.81 16
13 N -0.94 -58.43 10.86 21.65 0.24 -58.19 16
14 Si 0.96 47.30 29.57 68.60 2.03 49.33 16
15 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16
16 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16
17 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
18 C 0.18 9.38 5.17 86.56 0.45 9.83 16
19 C 0.10 4.25 5.28 87.55 0.46 4.71 16
20 C -0.10 -2.60 4.43 30.76 0.14 -2.47 16
21 C -0.17 -4.65 5.81 30.73 0.18 -4.47 16
22 C 0.06 1.38 6.84 72.01 0.49 1.87 16
23 O -0.40 -10.32 10.45 -148.98 -1.56 -11.87 16
24 C 0.07 1.36 5.25 72.01 0.38 1.74 16
25 H 0.10 1.99 3.81 -2.38 -0.01 1.98 16
26 H 0.09 1.63 7.98 -2.39 -0.02 1.61 16
27 H 0.03 1.17 7.15 -2.39 -0.02 1.16 16
28 H 0.12 2.18 2.42 -2.39 -0.01 2.18 16
29 H 0.09 1.85 8.05 -2.39 -0.02 1.84 16
30 H 0.07 2.12 4.78 -2.39 -0.01 2.11 16
31 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16
32 H 0.05 1.59 7.59 -2.39 -0.02 1.57 16
33 H 0.04 1.51 8.02 -2.38 -0.02 1.49 16
34 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16
35 H 0.02 1.50 6.53 -2.39 -0.02 1.49 16
36 H 0.01 0.58 7.99 -2.39 -0.02 0.56 16
37 H 0.05 2.29 7.33 -2.38 -0.02 2.28 16
38 H 0.08 2.87 7.73 -2.39 -0.02 2.85 16
39 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16
40 H 0.10 1.96 8.10 -2.38 -0.02 1.94 16
41 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16
42 H 0.06 2.26 5.54 -2.39 -0.01 2.24 16
43 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16
44 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16
45 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
46 H 0.12 2.07 5.10 -2.39 -0.01 2.05 16
Total: -1.00 -77.02 328.60 3.12 -73.89
By element:
Atomic # 1 Polarization: 14.08 SS G_CDS: 0.98 Total: 15.05 kcal
Atomic # 6 Polarization: 8.82 SS G_CDS: 5.29 Total: 14.11 kcal
Atomic # 7 Polarization: -108.68 SS G_CDS: -3.58 Total: -112.26 kcal
Atomic # 8 Polarization: -38.53 SS G_CDS: -1.60 Total: -40.13 kcal
Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal
Total: -77.02 3.12 -73.89 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000983025485.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.649 kcal
(2) G-P(sol) polarization free energy of solvation -77.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.368 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.246 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds