Wall clock time and date at job start Tue Mar 31 2020 03:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00222 * 2 1 4 4 H 1.07992 * 120.00668 * 204.46589 * 3 2 1 5 5 C 1.38821 * 119.99827 * 24.46640 * 3 2 1 6 6 N 1.31620 * 119.99729 * 14.46537 * 5 3 2 7 7 Si 1.86804 * 119.99874 * 194.46584 * 5 3 2 8 8 H 1.48496 * 109.47110 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46728 * 120.00154 * 7 5 3 10 10 H 1.48501 * 109.46771 * 240.00068 * 7 5 3 11 11 C 1.46497 * 119.99578 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.46350 * 59.99802 * 11 2 1 13 13 C 1.53188 * 109.31242 * 178.60973 * 12 11 2 14 14 N 1.46928 * 108.77539 * 54.63844 * 13 12 11 15 15 C 1.34774 * 120.63003 * 126.36941 * 14 13 12 16 16 O 1.21271 * 120.00464 * 5.19990 * 15 14 13 17 17 C 1.50705 * 119.99467 * 185.20885 * 15 14 13 18 18 C 1.52996 * 110.45655 * 296.17530 * 17 15 14 19 19 C 1.54504 * 110.63279 * 58.86408 * 17 15 14 20 20 C 1.54483 * 104.06143 * 118.70094 * 19 17 15 21 21 O 1.44422 * 104.80442 * 23.97991 * 20 19 17 22 22 C 1.44420 * 105.27550 * 319.48686 * 21 20 19 23 23 C 1.46930 * 118.73496 * 306.64015 * 14 13 12 24 24 C 1.52760 * 109.00778 * 53.31161 * 23 14 13 25 25 H 1.09004 * 109.47300 * 271.82106 * 1 2 3 26 26 H 1.08999 * 109.47047 * 31.82173 * 1 2 3 27 27 H 1.09000 * 109.47219 * 151.82694 * 1 2 3 28 28 H 0.97006 * 119.99343 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.45844 * 179.97438 * 11 2 1 30 30 H 1.09007 * 109.49678 * 58.66305 * 12 11 2 31 31 H 1.08991 * 109.52170 * 298.58113 * 12 11 2 32 32 H 1.08997 * 109.59227 * 294.85151 * 13 12 11 33 33 H 1.08998 * 109.58605 * 174.42210 * 13 12 11 34 34 H 1.09001 * 109.47879 * 291.66568 * 18 17 15 35 35 H 1.09004 * 109.47150 * 51.66248 * 18 17 15 36 36 H 1.09005 * 109.47448 * 171.66421 * 18 17 15 37 37 H 1.08997 * 110.51500 * 237.34478 * 19 17 15 38 38 H 1.09003 * 110.50967 * 0.06018 * 19 17 15 39 39 H 1.09005 * 110.37295 * 265.14537 * 20 19 17 40 40 H 1.09005 * 110.36828 * 142.81367 * 20 19 17 41 41 H 1.09003 * 110.37597 * 159.34293 * 22 21 20 42 42 H 1.08996 * 110.37392 * 281.57198 * 22 21 20 43 43 H 1.09002 * 109.58369 * 173.14740 * 23 14 13 44 44 H 1.09004 * 109.58483 * 293.56563 * 23 14 13 45 45 H 1.09001 * 109.56199 * 185.55452 * 24 23 14 46 46 H 1.08996 * 109.38907 * 65.51490 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1569 1.2279 -0.3873 5 6 1.5491 2.3341 0.4979 6 7 0.4536 2.2427 1.2217 7 14 2.2958 4.0087 0.1407 8 1 3.5165 3.8398 -0.6878 9 1 1.3107 4.8436 -0.5926 10 1 2.6540 4.6738 1.4192 11 6 2.1974 -1.2688 -0.0006 12 6 1.8275 -2.0706 -1.2505 13 6 2.6211 -3.3807 -1.2653 14 7 2.3848 -4.0910 -0.0010 15 6 1.9578 -5.3693 -0.0010 16 8 1.8552 -5.9745 -1.0469 17 6 1.6076 -6.0467 1.2990 18 6 2.8451 -6.1644 2.1909 19 6 0.4852 -5.2760 2.0293 20 6 -0.6719 -6.2954 2.1206 21 8 -0.0326 -7.5878 2.0386 22 6 0.9958 -7.4405 1.0354 23 6 2.6171 -3.3792 1.2632 24 6 1.8288 -2.0708 1.2496 25 1 -0.3634 0.0327 1.0272 26 1 -0.3633 0.8732 -0.5419 27 1 -0.3633 -0.9059 -0.4852 28 1 0.0337 3.0452 1.5693 29 1 3.2690 -1.0694 -0.0009 30 1 2.0688 -1.4890 -2.1404 31 1 0.7603 -2.2917 -1.2388 32 1 3.6841 -3.1630 -1.3689 33 1 2.2897 -3.9993 -2.0993 34 1 3.5471 -6.8705 1.7472 35 1 3.3212 -5.1881 2.2826 36 1 2.5490 -6.5185 3.1784 37 1 0.8119 -4.9789 3.0259 38 1 0.1813 -4.4041 1.4501 39 1 -1.3631 -6.1604 1.2886 40 1 -1.1957 -6.1907 3.0708 41 1 1.7534 -8.2156 1.1519 42 1 0.5608 -7.4831 0.0369 43 1 2.2831 -3.9969 2.0970 44 1 3.6798 -3.1614 1.3700 45 1 2.0711 -1.4895 2.1393 46 1 0.7615 -2.2915 1.2387 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985725843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:12 Heat of formation + Delta-G solvation = -50.317672 kcal Electronic energy + Delta-G solvation = -25896.769870 eV Core-core repulsion = 22401.383103 eV Total energy + Delta-G solvation = -3495.386767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08182 -38.85034 -37.45919 -35.24141 -34.00254 -32.06359 -30.67003 -29.99848 -29.74260 -26.75664 -26.04343 -25.24151 -23.43733 -22.68455 -22.56920 -21.26435 -19.66535 -18.41400 -16.96448 -16.81364 -16.45989 -16.26907 -15.40401 -15.04704 -14.86498 -14.69532 -14.08826 -14.00154 -13.77183 -13.53311 -13.38963 -13.24281 -12.80952 -12.52206 -12.27203 -12.12233 -11.92107 -11.70257 -11.58686 -11.40666 -11.23072 -11.03994 -10.93317 -10.87276 -10.78703 -10.43783 -10.23887 -10.17053 -9.94103 -9.87271 -9.66483 -9.52267 -8.61219 -8.49587 -6.77312 -5.77779 -3.23825 2.58999 3.01344 3.34158 3.42210 3.43702 3.74838 4.23967 4.44139 4.44799 4.51455 4.71538 4.92971 5.01825 5.09965 5.20547 5.29212 5.32906 5.38277 5.42576 5.49760 5.54388 5.58164 5.60575 5.65193 5.69382 5.73542 5.77068 5.87054 5.88780 6.00189 6.12932 6.22190 6.34885 6.44886 6.54499 6.61672 6.74732 6.91915 6.94858 7.31699 7.47196 7.65396 7.76819 8.16524 8.36690 9.19279 9.83012 10.33335 11.27474 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.003853 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.972781 B = 7264.548857 C = 7630.359719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.904 5.904 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.180 3.820 12 C -0.146 4.146 13 C 0.115 3.885 14 N -0.600 5.600 15 C 0.529 3.471 16 O -0.548 6.548 17 C -0.115 4.115 18 C -0.147 4.147 19 C -0.147 4.147 20 C 0.045 3.955 21 O -0.374 6.374 22 C 0.066 3.934 23 C 0.094 3.906 24 C -0.146 4.146 25 H 0.025 0.975 26 H 0.041 0.959 27 H -0.002 1.002 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -15.691 2.406 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.186 4.186 13 C -0.008 4.008 14 N -0.332 5.332 15 C 0.316 3.684 16 O -0.426 6.426 17 C -0.118 4.118 18 C -0.204 4.204 19 C -0.185 4.185 20 C -0.031 4.031 21 O -0.293 6.293 22 C -0.011 4.011 23 C -0.029 4.029 24 C -0.187 4.187 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.128 -16.018 2.037 16.287 hybrid contribution 0.330 1.409 -0.153 1.455 sum 2.458 -14.610 1.884 14.934 Atomic orbital electron populations 1.20711 0.82954 0.95840 0.98695 1.43928 1.01656 1.00195 1.85770 1.19235 0.99283 0.85733 1.34371 0.91518 1.25025 0.98176 0.98537 0.97716 1.70077 1.21422 1.27338 1.36063 0.86235 0.78522 0.84509 0.77573 1.20305 1.21630 1.21752 1.20287 0.96039 0.86052 0.90527 1.22471 1.00132 0.94771 1.01274 1.21669 0.99873 0.93538 0.85703 1.48094 1.65455 1.11553 1.08118 1.20198 0.76448 0.81537 0.90168 1.90657 1.54283 1.64164 1.33528 1.22099 0.98122 0.97168 0.94422 1.22141 0.95464 1.03508 0.99279 1.23214 0.94379 0.99220 1.01675 1.23436 0.94979 0.82262 1.02456 1.89106 1.49586 1.31211 1.59368 1.23391 0.90436 0.94307 0.93010 1.22183 1.00584 0.94624 0.85488 1.22462 0.99852 0.94422 1.01926 0.95654 0.94005 0.98357 0.93818 0.91920 0.90804 0.92095 0.91674 0.89676 0.91808 0.90595 0.90873 0.89285 0.89407 0.92056 0.88673 0.88686 0.90446 0.89094 0.91359 0.90433 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 8.07 59.85 0.48 4.34 16 2 N -0.59 -14.05 2.80 -173.44 -0.49 -14.54 16 3 C -0.26 -6.77 9.55 -15.06 -0.14 -6.92 16 4 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 5 C 0.00 0.11 5.04 -17.43 -0.09 0.02 16 6 N -0.90 -25.65 10.91 55.49 0.61 -25.05 16 7 Si 0.90 21.31 29.58 -169.99 -5.03 16.28 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.18 3.36 2.55 -67.89 -0.17 3.18 16 12 C -0.15 -2.42 5.31 -26.61 -0.14 -2.56 16 13 C 0.11 1.65 6.42 -3.71 -0.02 1.62 16 14 N -0.60 -8.19 2.91 -173.03 -0.50 -8.69 16 15 C 0.53 7.45 6.36 -10.98 -0.07 7.38 16 16 O -0.55 -9.37 14.96 5.56 0.08 -9.29 16 17 C -0.11 -1.29 0.68 -154.09 -0.11 -1.39 16 18 C -0.15 -1.34 7.91 37.16 0.29 -1.05 16 19 C -0.15 -1.54 4.68 -25.16 -0.12 -1.65 16 20 C 0.05 0.47 7.63 37.94 0.29 0.76 16 21 O -0.37 -4.55 11.65 -35.23 -0.41 -4.96 16 22 C 0.07 0.77 6.48 37.94 0.25 1.01 16 23 C 0.09 1.17 4.16 -3.93 -0.02 1.15 16 24 C -0.15 -2.35 5.30 -26.83 -0.14 -2.49 16 25 H 0.03 0.64 7.50 -51.93 -0.39 0.26 16 26 H 0.04 1.08 7.26 -51.93 -0.38 0.70 16 27 H 0.00 -0.04 6.45 -51.93 -0.34 -0.38 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.06 1.19 7.87 -51.93 -0.41 0.79 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.27 7.04 -51.93 -0.37 0.91 16 34 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.08 0.67 5.04 -51.93 -0.26 0.40 16 36 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.09 0.80 7.24 -51.93 -0.38 0.42 16 38 H 0.09 1.03 6.41 -51.93 -0.33 0.70 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.98 7.82 -51.93 -0.41 0.57 16 42 H 0.08 1.02 7.01 -51.93 -0.36 0.65 16 43 H 0.09 0.96 3.09 -51.93 -0.16 0.80 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.06 1.00 6.99 -51.93 -0.36 0.64 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -30.40 341.92 -7.71 -38.11 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.41 Total: -0.43 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.29 Total: 3.42 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.38 Total: -48.28 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.33 Total: -14.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.40 -7.71 -38.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985725843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.207 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds