Wall clock time and date at job start Tue Mar 31 2020 03:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00222 * 2 1 4 4 H 1.07992 * 120.00668 * 204.46589 * 3 2 1 5 5 C 1.38821 * 119.99827 * 24.46640 * 3 2 1 6 6 N 1.31620 * 119.99729 * 14.46537 * 5 3 2 7 7 Si 1.86804 * 119.99874 * 194.46584 * 5 3 2 8 8 H 1.48496 * 109.47110 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46728 * 120.00154 * 7 5 3 10 10 H 1.48501 * 109.46771 * 240.00068 * 7 5 3 11 11 C 1.46497 * 119.99578 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.46350 * 59.99802 * 11 2 1 13 13 C 1.53188 * 109.31242 * 178.60973 * 12 11 2 14 14 N 1.46928 * 108.77539 * 54.63844 * 13 12 11 15 15 C 1.34774 * 120.63003 * 126.36941 * 14 13 12 16 16 O 1.21271 * 120.00464 * 5.19990 * 15 14 13 17 17 C 1.50705 * 119.99467 * 185.20885 * 15 14 13 18 18 C 1.52996 * 110.45655 * 296.17530 * 17 15 14 19 19 C 1.54504 * 110.63279 * 58.86408 * 17 15 14 20 20 C 1.54483 * 104.06143 * 118.70094 * 19 17 15 21 21 O 1.44422 * 104.80442 * 23.97991 * 20 19 17 22 22 C 1.44420 * 105.27550 * 319.48686 * 21 20 19 23 23 C 1.46930 * 118.73496 * 306.64015 * 14 13 12 24 24 C 1.52760 * 109.00778 * 53.31161 * 23 14 13 25 25 H 1.09004 * 109.47300 * 271.82106 * 1 2 3 26 26 H 1.08999 * 109.47047 * 31.82173 * 1 2 3 27 27 H 1.09000 * 109.47219 * 151.82694 * 1 2 3 28 28 H 0.97006 * 119.99343 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.45844 * 179.97438 * 11 2 1 30 30 H 1.09007 * 109.49678 * 58.66305 * 12 11 2 31 31 H 1.08991 * 109.52170 * 298.58113 * 12 11 2 32 32 H 1.08997 * 109.59227 * 294.85151 * 13 12 11 33 33 H 1.08998 * 109.58605 * 174.42210 * 13 12 11 34 34 H 1.09001 * 109.47879 * 291.66568 * 18 17 15 35 35 H 1.09004 * 109.47150 * 51.66248 * 18 17 15 36 36 H 1.09005 * 109.47448 * 171.66421 * 18 17 15 37 37 H 1.08997 * 110.51500 * 237.34478 * 19 17 15 38 38 H 1.09003 * 110.50967 * 0.06018 * 19 17 15 39 39 H 1.09005 * 110.37295 * 265.14537 * 20 19 17 40 40 H 1.09005 * 110.36828 * 142.81367 * 20 19 17 41 41 H 1.09003 * 110.37597 * 159.34293 * 22 21 20 42 42 H 1.08996 * 110.37392 * 281.57198 * 22 21 20 43 43 H 1.09002 * 109.58369 * 173.14740 * 23 14 13 44 44 H 1.09004 * 109.58483 * 293.56563 * 23 14 13 45 45 H 1.09001 * 109.56199 * 185.55452 * 24 23 14 46 46 H 1.08996 * 109.38907 * 65.51490 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1569 1.2279 -0.3873 5 6 1.5491 2.3341 0.4979 6 7 0.4536 2.2427 1.2217 7 14 2.2958 4.0087 0.1407 8 1 3.5165 3.8398 -0.6878 9 1 1.3107 4.8436 -0.5926 10 1 2.6540 4.6738 1.4192 11 6 2.1974 -1.2688 -0.0006 12 6 1.8275 -2.0706 -1.2505 13 6 2.6211 -3.3807 -1.2653 14 7 2.3848 -4.0910 -0.0010 15 6 1.9578 -5.3693 -0.0010 16 8 1.8552 -5.9745 -1.0469 17 6 1.6076 -6.0467 1.2990 18 6 2.8451 -6.1644 2.1909 19 6 0.4852 -5.2760 2.0293 20 6 -0.6719 -6.2954 2.1206 21 8 -0.0326 -7.5878 2.0386 22 6 0.9958 -7.4405 1.0354 23 6 2.6171 -3.3792 1.2632 24 6 1.8288 -2.0708 1.2496 25 1 -0.3634 0.0327 1.0272 26 1 -0.3633 0.8732 -0.5419 27 1 -0.3633 -0.9059 -0.4852 28 1 0.0337 3.0452 1.5693 29 1 3.2690 -1.0694 -0.0009 30 1 2.0688 -1.4890 -2.1404 31 1 0.7603 -2.2917 -1.2388 32 1 3.6841 -3.1630 -1.3689 33 1 2.2897 -3.9993 -2.0993 34 1 3.5471 -6.8705 1.7472 35 1 3.3212 -5.1881 2.2826 36 1 2.5490 -6.5185 3.1784 37 1 0.8119 -4.9789 3.0259 38 1 0.1813 -4.4041 1.4501 39 1 -1.3631 -6.1604 1.2886 40 1 -1.1957 -6.1907 3.0708 41 1 1.7534 -8.2156 1.1519 42 1 0.5608 -7.4831 0.0369 43 1 2.2831 -3.9969 2.0970 44 1 3.6798 -3.1614 1.3700 45 1 2.0711 -1.4895 2.1393 46 1 0.7615 -2.2915 1.2387 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985725843.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:12 Heat of formation + Delta-G solvation = -69.203655 kcal Electronic energy + Delta-G solvation = -25897.588827 eV Core-core repulsion = 22401.383103 eV Total energy + Delta-G solvation = -3496.205724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11465 -39.93016 -38.79888 -36.79756 -35.06762 -33.71650 -31.87827 -31.44374 -30.80832 -28.01896 -27.57964 -26.64837 -24.66916 -24.05539 -23.58452 -22.53354 -20.93322 -19.64607 -18.75916 -17.98037 -17.52734 -17.22588 -16.96907 -16.31229 -15.93327 -15.81614 -15.63995 -15.22370 -15.04543 -14.85999 -14.60678 -14.52173 -14.06925 -13.87762 -13.43835 -13.27005 -13.17887 -12.92108 -12.89261 -12.71263 -12.65844 -12.42885 -12.25886 -12.21681 -12.05591 -11.97571 -11.87059 -11.79018 -11.51536 -11.19621 -10.83306 -10.64386 -10.59469 -9.70051 -8.73166 -7.82027 -5.29516 1.46154 1.48734 1.49847 1.58064 1.92615 2.51637 2.86850 3.31860 3.35576 3.51290 3.61800 3.67553 3.81987 3.93596 4.06985 4.16475 4.17674 4.19755 4.33217 4.37455 4.52748 4.63211 4.67144 4.70975 4.72347 4.78351 4.81520 4.83079 4.86763 4.91075 4.93011 4.96348 5.02351 5.09127 5.22407 5.24387 5.37139 5.49870 5.58113 5.68394 5.70230 5.72684 6.34833 6.37737 7.05567 7.17163 7.89904 8.35209 9.21634 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.003853 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.972781 B = 7264.548857 C = 7630.359719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.609 5.609 3 C -0.261 4.261 4 H 0.070 0.930 5 C -0.049 4.049 6 N -0.936 5.936 7 Si 0.962 3.038 8 H -0.266 1.266 9 H -0.295 1.295 10 H -0.292 1.292 11 C 0.173 3.827 12 C -0.133 4.133 13 C 0.121 3.879 14 N -0.600 5.600 15 C 0.527 3.473 16 O -0.581 6.581 17 C -0.110 4.110 18 C -0.144 4.144 19 C -0.145 4.145 20 C 0.042 3.958 21 O -0.384 6.384 22 C 0.066 3.934 23 C 0.104 3.896 24 C -0.135 4.135 25 H 0.003 0.997 26 H 0.011 0.989 27 H 0.023 0.977 28 H 0.247 0.753 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.056 0.944 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -16.783 3.271 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.331 5.331 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.244 4.244 6 N -0.582 5.582 7 Si 0.791 3.209 8 H -0.191 1.191 9 H -0.222 1.222 10 H -0.219 1.219 11 C 0.066 3.934 12 C -0.173 4.173 13 C -0.001 4.001 14 N -0.331 5.331 15 C 0.316 3.684 16 O -0.462 6.462 17 C -0.114 4.114 18 C -0.201 4.201 19 C -0.183 4.183 20 C -0.035 4.035 21 O -0.303 6.303 22 C -0.012 4.012 23 C -0.018 4.018 24 C -0.175 4.175 25 H 0.021 0.979 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.074 0.926 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.582 -17.136 2.902 17.746 hybrid contribution -0.130 1.693 -0.478 1.764 sum 3.452 -15.443 2.425 16.009 Atomic orbital electron populations 1.20390 0.83436 0.95505 0.97033 1.44139 1.01672 1.01374 1.85936 1.19558 0.99367 0.86973 1.33207 0.91233 1.25717 0.98893 1.01641 0.98173 1.70220 1.22852 1.27649 1.37505 0.85282 0.77928 0.80547 0.77153 1.19081 1.22239 1.21930 1.20512 0.95461 0.84725 0.92661 1.22272 0.99649 0.95542 0.99804 1.21548 1.00361 0.92083 0.86153 1.48139 1.65232 1.11590 1.08183 1.20710 0.75492 0.81403 0.90802 1.90646 1.55552 1.64947 1.35056 1.22118 0.99405 0.96533 0.93318 1.22162 0.94326 1.04148 0.99473 1.23232 0.94137 0.98515 1.02394 1.23566 0.94941 0.81596 1.03385 1.89101 1.49819 1.32133 1.59220 1.23374 0.90625 0.95157 0.91997 1.22211 1.01059 0.92844 0.85718 1.22241 0.99903 0.95706 0.99631 0.97910 0.97056 0.95890 0.94408 0.91987 0.91458 0.93351 0.89940 0.90218 0.91361 0.89921 0.89250 0.87113 0.90861 0.92735 0.86580 0.87280 0.92574 0.86588 0.89494 0.91804 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 8.07 127.77 1.03 9.78 16 2 N -0.61 -28.87 2.80 -702.63 -1.97 -30.84 16 3 C -0.26 -13.75 9.55 84.04 0.80 -12.95 16 4 H 0.07 3.56 7.84 -2.91 -0.02 3.54 16 5 C -0.05 -2.66 5.04 84.86 0.43 -2.23 16 6 N -0.94 -54.10 10.91 21.65 0.24 -53.86 16 7 Si 0.96 44.02 29.58 68.60 2.03 46.05 16 8 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 9 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 C 0.17 6.31 2.55 45.02 0.11 6.43 16 12 C -0.13 -4.26 5.31 30.67 0.16 -4.10 16 13 C 0.12 3.28 6.42 86.36 0.55 3.84 16 14 N -0.60 -15.11 2.91 -819.74 -2.39 -17.50 16 15 C 0.53 13.95 6.36 87.66 0.56 14.51 16 16 O -0.58 -19.44 14.96 -3.00 -0.04 -19.48 16 17 C -0.11 -2.22 0.68 -51.91 -0.04 -2.26 16 18 C -0.14 -2.11 7.91 71.98 0.57 -1.54 16 19 C -0.15 -2.68 4.68 31.61 0.15 -2.53 16 20 C 0.04 0.78 7.63 72.49 0.55 1.34 16 21 O -0.38 -8.62 11.65 -148.98 -1.74 -10.36 16 22 C 0.07 1.43 6.48 72.49 0.47 1.90 16 23 C 0.10 2.29 4.16 86.22 0.36 2.65 16 24 C -0.13 -4.13 5.30 30.53 0.16 -3.97 16 25 H 0.00 0.14 7.50 -2.39 -0.02 0.12 16 26 H 0.01 0.57 7.26 -2.39 -0.02 0.56 16 27 H 0.02 0.97 6.45 -2.39 -0.02 0.95 16 28 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 29 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 30 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.05 1.67 6.72 -2.39 -0.02 1.65 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.30 7.04 -2.39 -0.02 2.28 16 34 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 35 H 0.08 1.10 5.04 -2.38 -0.01 1.09 16 36 H 0.09 1.07 8.10 -2.38 -0.02 1.05 16 37 H 0.11 1.57 7.24 -2.39 -0.02 1.56 16 38 H 0.07 1.60 6.41 -2.39 -0.02 1.58 16 39 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.11 2.03 7.82 -2.39 -0.02 2.01 16 42 H 0.06 1.46 7.01 -2.39 -0.02 1.45 16 43 H 0.12 2.03 3.09 -2.39 -0.01 2.02 16 44 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.05 1.66 6.99 -2.39 -0.02 1.64 16 Total: -1.00 -65.97 341.92 2.97 -63.01 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.97 Total: 12.11 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.88 Total: 10.87 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -4.12 Total: -102.20 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.78 Total: -29.84 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.97 2.97 -63.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985725843.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.198 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds