Wall clock time and date at job start Tue Mar 31 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53045 * 109.45813 * 275.06811 * 10 9 7 12 12 C 1.53194 * 109.31101 * 178.61864 * 11 10 9 13 13 N 1.46920 * 108.77644 * 54.63136 * 12 11 10 14 14 C 1.34773 * 120.62930 * 126.41851 * 13 12 11 15 15 O 1.21285 * 120.00504 * 179.97438 * 14 13 12 16 16 C 1.50707 * 120.00047 * 359.97302 * 14 13 12 17 17 C 1.53003 * 109.47050 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46622 * 180.02562 * 17 16 14 19 19 H 1.09002 * 110.45749 * 54.30336 * 18 17 16 20 20 C 1.54518 * 110.50902 * 176.90758 * 18 17 16 21 21 C 1.54472 * 104.06350 * 118.64480 * 20 18 17 22 22 O 1.44426 * 104.80412 * 23.97958 * 21 20 18 23 23 C 1.44647 * 105.37022 * 319.56359 * 22 21 20 24 24 C 1.46923 * 118.74320 * 306.39321 * 13 12 11 25 25 C 1.53038 * 109.45776 * 155.00227 * 10 9 7 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.08991 * 109.45767 * 35.02510 * 10 9 7 29 29 H 1.09007 * 109.49596 * 298.56293 * 11 10 9 30 30 H 1.08994 * 109.49915 * 58.66054 * 11 10 9 31 31 H 1.09000 * 109.57934 * 294.84389 * 12 11 10 32 32 H 1.08996 * 109.70220 * 174.49403 * 12 11 10 33 33 H 1.08998 * 109.47252 * 300.00189 * 16 14 13 34 34 H 1.08997 * 109.46459 * 60.00231 * 16 14 13 35 35 H 1.08998 * 109.47282 * 300.00213 * 17 16 14 36 36 H 1.08997 * 109.46612 * 60.00395 * 17 16 14 37 37 H 1.08995 * 110.50982 * 237.29035 * 20 18 17 38 38 H 1.08997 * 110.50675 * 359.86519 * 20 18 17 39 39 H 1.08999 * 110.37697 * 142.80673 * 21 20 18 40 40 H 1.09000 * 110.37634 * 265.15192 * 21 20 18 41 41 H 1.09004 * 110.34013 * 281.59230 * 23 22 21 42 42 H 1.08996 * 110.50840 * 159.18677 * 23 22 21 43 43 H 1.09007 * 109.58482 * 293.82586 * 24 13 12 44 44 H 1.08998 * 109.59242 * 173.39600 * 24 13 12 45 45 H 1.09000 * 109.49607 * 301.33212 * 25 10 9 46 46 H 1.09001 * 109.50254 * 61.43672 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 2.4232 -4.0270 -1.4528 12 6 3.2187 -5.3362 -1.4529 13 7 2.4412 -6.3621 -0.7447 14 6 2.1732 -7.5462 -1.3297 15 8 1.5306 -8.3852 -0.7345 16 6 2.6719 -7.8280 -2.7237 17 6 2.2344 -9.2315 -3.1479 18 6 2.7413 -9.5177 -4.5628 19 1 3.8187 -9.3620 -4.6203 20 6 2.3791 -10.9588 -4.9864 21 6 1.4692 -10.7699 -6.2204 22 8 1.8274 -9.4740 -6.7480 23 6 2.0100 -8.6259 -5.5906 24 6 1.9617 -6.0728 0.6137 25 6 1.1802 -4.7553 0.5906 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.9683 -3.5535 0.5769 29 1 1.5124 -4.1548 -2.0379 30 1 3.0288 -3.2333 -1.8901 31 1 4.1715 -5.1847 -0.9455 32 1 3.3981 -5.6571 -2.4789 33 1 2.2566 -7.0935 -3.4136 34 1 3.7601 -7.7667 -2.7394 35 1 2.6501 -9.9657 -2.4579 36 1 1.1463 -9.2931 -3.1319 37 1 3.2771 -11.5148 -5.2556 38 1 1.8411 -11.4680 -4.1869 39 1 1.6648 -11.5474 -6.9588 40 1 0.4204 -10.7821 -5.9239 41 1 1.0442 -8.3078 -5.1978 42 1 2.6212 -7.7598 -5.8444 43 1 2.8121 -5.9814 1.2896 44 1 1.3095 -6.8786 0.9504 45 1 0.9012 -4.4800 1.6077 46 1 0.2812 -4.8763 -0.0138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990904044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:58 Heat of formation + Delta-G solvation = -86.832141 kcal Electronic energy + Delta-G solvation = -24211.287033 eV Core-core repulsion = 20714.316880 eV Total energy + Delta-G solvation = -3496.970153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27250 -39.56096 -37.45677 -34.74671 -34.50795 -32.18237 -31.35900 -30.59376 -29.36768 -28.61312 -25.37444 -24.30486 -23.05696 -22.97251 -22.15765 -20.58612 -20.17120 -18.76291 -17.23406 -17.03256 -16.76456 -16.04128 -15.78549 -15.64452 -15.27377 -14.84824 -14.29531 -13.88462 -13.84249 -13.67918 -13.49684 -13.36231 -13.05702 -12.74392 -12.62651 -12.20394 -11.99114 -11.77706 -11.71126 -11.59201 -11.20221 -11.00536 -10.96485 -10.90569 -10.84697 -10.76534 -10.51157 -10.23378 -10.06861 -9.86127 -9.73274 -9.66823 -8.95262 -8.51260 -7.01822 -5.81376 -3.10748 2.67421 3.07270 3.39579 3.45025 3.47556 3.68140 4.20551 4.34618 4.47733 4.54189 4.68128 4.75586 4.88929 4.97293 5.01830 5.07960 5.21529 5.30751 5.32937 5.36145 5.38922 5.41751 5.44319 5.50584 5.53165 5.60509 5.63860 5.67508 5.70366 5.88765 5.92162 5.97802 6.04434 6.19651 6.33670 6.35972 6.47722 6.49127 6.59439 6.85796 6.99908 7.50673 7.65066 8.22880 8.36794 9.48136 10.05545 10.40130 11.41223 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.002797 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.345229 B =10008.125787 C =10744.316132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.151 4.151 12 C 0.107 3.893 13 N -0.607 5.607 14 C 0.513 3.487 15 O -0.552 6.552 16 C -0.142 4.142 17 C -0.094 4.094 18 C -0.123 4.123 19 H 0.084 0.916 20 C -0.152 4.152 21 C 0.044 3.956 22 O -0.379 6.379 23 C 0.046 3.954 24 C 0.115 3.885 25 C -0.139 4.139 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -20.523 -8.321 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.193 4.193 12 C -0.017 4.017 13 N -0.340 5.340 14 C 0.301 3.699 15 O -0.431 6.431 16 C -0.182 4.182 17 C -0.132 4.132 18 C -0.142 4.142 19 H 0.103 0.897 20 C -0.189 4.189 21 C -0.033 4.033 22 O -0.297 6.297 23 C -0.031 4.031 24 C -0.007 4.007 25 C -0.178 4.178 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.661 -20.732 -8.206 23.271 hybrid contribution 0.159 1.132 0.163 1.155 sum 6.820 -19.601 -8.042 22.257 Atomic orbital electron populations 1.69673 1.05142 1.25600 1.57584 1.24760 0.95506 0.97743 1.02954 0.86137 0.78765 0.84173 0.77217 1.20547 1.21867 1.21865 1.19270 0.90980 0.84073 1.42768 0.91117 1.42448 1.05821 0.99726 1.88476 1.20159 0.94445 0.86092 0.92429 1.22679 1.00049 0.94741 1.01799 1.21875 0.94543 0.88724 0.96523 1.48208 1.53953 1.15017 1.16808 1.20633 0.79642 0.81360 0.88218 1.90666 1.40760 1.45904 1.65749 1.21745 1.02736 0.99307 0.94420 1.21404 1.01922 0.95475 0.94385 1.22607 1.01252 0.94892 0.95414 0.89715 1.23003 1.00578 0.96946 0.98419 1.23411 0.98175 0.86210 0.95522 1.89151 1.90293 1.21240 1.29063 1.23641 0.99834 0.94103 0.85534 1.21609 0.98680 0.98075 0.82384 1.22205 0.99200 0.94149 1.02227 0.93516 0.78266 0.93439 0.92192 0.90610 0.91482 0.90434 0.88790 0.88889 0.90760 0.90869 0.90676 0.90127 0.89260 0.92247 0.91841 0.88915 0.91672 0.89434 0.90589 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.51 5.12 -53.38 -0.27 -17.79 16 10 C 0.18 3.33 2.73 -67.88 -0.19 3.14 16 11 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 12 C 0.11 1.29 6.34 -3.71 -0.02 1.26 16 13 N -0.61 -8.09 2.97 -172.77 -0.51 -8.60 16 14 C 0.51 6.85 7.70 -10.98 -0.08 6.76 16 15 O -0.55 -9.17 15.40 5.55 0.09 -9.08 16 16 C -0.14 -1.32 3.91 -27.88 -0.11 -1.43 16 17 C -0.09 -0.84 3.71 -26.73 -0.10 -0.94 16 18 C -0.12 -0.93 3.13 -89.05 -0.28 -1.21 16 19 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 20 C -0.15 -1.06 6.74 -25.16 -0.17 -1.23 16 21 C 0.04 0.34 7.64 37.93 0.29 0.63 16 22 O -0.38 -3.98 11.65 -35.23 -0.41 -4.39 16 23 C 0.05 0.39 6.43 37.93 0.24 0.64 16 24 C 0.12 1.62 6.43 -3.71 -0.02 1.60 16 25 C -0.14 -2.26 5.55 -26.61 -0.15 -2.40 16 26 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 28 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 33 H 0.09 0.79 7.11 -51.93 -0.37 0.42 16 34 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.55 7.78 -51.93 -0.40 0.15 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.09 1.29 7.01 -51.93 -0.36 0.92 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -32.02 361.61 -8.97 -41.00 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.03 Total: 6.35 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.98 Total: -2.80 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.06 Total: -53.43 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.33 Total: -13.47 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.02 -8.97 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990904044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.836 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds