Wall clock time and date at job start Tue Mar 31 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47387 * 125.37513 * 2 1 4 4 C 1.54107 * 103.70231 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.55306 * 241.22440 * 4 3 2 6 6 C 1.50699 * 110.55136 * 118.55497 * 4 3 2 7 7 O 1.21281 * 120.00454 * 262.00501 * 6 4 3 8 8 N 1.34783 * 120.00027 * 81.99821 * 6 4 3 9 9 C 1.46925 * 120.63284 * 180.02562 * 8 6 4 10 10 C 1.53190 * 108.77346 * 233.63531 * 9 8 6 11 11 C 1.53037 * 109.31152 * 305.35985 * 10 9 8 12 12 N 1.46504 * 109.45927 * 181.38584 * 11 10 9 13 13 C 1.36943 * 119.99781 * 154.97630 * 12 11 10 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 11 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48496 * 109.47031 * 59.99836 * 17 15 13 19 19 H 1.48497 * 109.47267 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47169 * 300.00118 * 17 15 13 21 21 C 1.53042 * 109.52514 * 61.37952 * 11 10 9 22 22 C 1.46921 * 120.62757 * 0.02807 * 8 6 4 23 23 N 1.47058 * 103.98792 * 359.89013 * 4 3 2 24 24 C 1.33943 * 109.18180 * 0.07359 * 23 4 3 25 25 O 1.21588 * 123.04373 * 180.02562 * 24 23 4 26 26 H 1.09005 * 109.46516 * 180.11723 * 1 2 3 27 27 H 1.08997 * 109.46879 * 300.11239 * 1 2 3 28 28 H 1.08988 * 109.46935 * 60.11463 * 1 2 3 29 29 H 1.09002 * 110.66062 * 61.48552 * 3 2 1 30 30 H 1.09000 * 110.59484 * 298.56218 * 3 2 1 31 31 H 1.09001 * 109.58722 * 113.84065 * 9 8 6 32 32 H 1.09010 * 109.70155 * 353.48791 * 9 8 6 33 33 H 1.09003 * 109.49664 * 185.41116 * 10 9 8 34 34 H 1.09000 * 109.52579 * 65.33362 * 10 9 8 35 35 H 1.08994 * 109.46263 * 301.36353 * 11 10 9 36 36 H 0.97000 * 120.00410 * 334.97955 * 12 11 10 37 37 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.50310 * 58.57405 * 21 11 10 39 39 H 1.09007 * 109.49832 * 178.67844 * 21 11 10 40 40 H 1.09005 * 109.58622 * 246.15581 * 22 8 6 41 41 H 1.09006 * 109.58894 * 6.43509 * 22 8 6 42 42 H 0.97005 * 125.40450 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2018 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2878 0.9477 0.8938 6 6 4.4907 1.0644 -1.2403 7 8 4.5691 0.3160 -2.1914 8 7 5.0656 2.2824 -1.2920 9 6 5.7901 2.7178 -2.4937 10 6 7.1962 3.1683 -2.0854 11 6 7.0886 4.2366 -0.9949 12 7 8.4306 4.6937 -0.6253 13 6 8.6052 5.9411 -0.0881 14 1 7.7537 6.5881 0.0628 15 6 9.8774 6.3764 0.2567 16 7 10.9152 5.5882 0.0723 17 14 10.1166 8.0810 0.9824 18 1 9.3441 8.1940 2.2456 19 1 11.5580 8.3019 1.2628 20 1 9.6376 9.1020 0.0162 21 6 6.3953 3.6446 0.2344 22 6 4.9795 3.1999 -0.1477 23 7 3.5538 -0.8247 0.0018 24 6 2.2412 -1.0917 0.0020 25 8 1.7947 -2.2226 0.0042 26 1 -0.3632 -1.0277 0.0021 27 1 -0.3633 0.5156 0.8890 28 1 -0.3633 0.5120 -0.8909 29 1 2.1439 1.7972 0.8962 30 1 2.1425 1.7968 -0.8962 31 1 5.2605 3.5493 -2.9586 32 1 5.8622 1.8901 -3.1995 33 1 7.7111 3.5835 -2.9518 34 1 7.7561 2.3143 -1.7043 35 1 6.5078 5.0798 -1.3685 36 1 9.1954 4.1128 -0.7612 37 1 11.8041 5.8922 0.3136 38 1 6.9622 2.7858 0.5937 39 1 6.3399 4.3989 1.0194 40 1 4.3838 4.0707 -0.4216 41 1 4.5143 2.6896 0.6957 42 1 4.2622 -1.4874 0.0024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996884805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:35 Heat of formation + Delta-G solvation = -25.497614 kcal Electronic energy + Delta-G solvation = -24425.579836 eV Core-core repulsion = 20827.729004 eV Total energy + Delta-G solvation = -3597.850832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64204 -39.82075 -37.55481 -36.39746 -34.63524 -34.36153 -32.25487 -31.16124 -29.81779 -29.06722 -27.47810 -25.23578 -23.99546 -23.15584 -22.43419 -20.81319 -20.49557 -19.23183 -18.04012 -17.67167 -17.12370 -16.57217 -16.29897 -15.46942 -15.24633 -14.91252 -14.47955 -14.40837 -14.07143 -13.84110 -13.79885 -13.57748 -13.45135 -13.38803 -12.82555 -12.67664 -12.44385 -12.20201 -12.05885 -11.68552 -11.08200 -10.95492 -10.90440 -10.59603 -10.49458 -10.33918 -10.29610 -9.93476 -9.76125 -9.43357 -8.99878 -8.88669 -8.69011 -7.06941 -5.85161 -3.15135 2.14312 2.44680 2.65227 3.03037 3.37130 3.41909 3.43464 3.57936 3.93999 4.12922 4.44095 4.50410 4.64631 4.89208 4.94793 5.03637 5.16736 5.21203 5.21713 5.27857 5.38459 5.43085 5.46434 5.59734 5.60870 5.81679 5.86444 6.10290 6.22071 6.27057 6.34043 6.38889 6.47206 6.76621 6.83549 6.92036 7.16169 7.28095 7.59888 7.96296 8.32841 8.34803 9.44117 10.00924 10.35138 11.37164 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.003030 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.999229 B = 9238.276507 C = 9547.590871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.638 5.638 3 C 0.108 3.892 4 C 0.102 3.898 5 H 0.119 0.881 6 C 0.503 3.497 7 O -0.530 6.530 8 N -0.599 5.599 9 C 0.116 3.884 10 C -0.139 4.139 11 C 0.179 3.821 12 N -0.724 5.724 13 C -0.244 4.244 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.153 4.153 22 C 0.103 3.897 23 N -0.714 5.714 24 C 0.706 3.294 25 O -0.585 6.585 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.384 0.616 37 H 0.257 0.743 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 -6.183 0.589 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.378 5.378 3 C -0.016 4.016 4 C -0.009 4.009 5 H 0.137 0.863 6 C 0.288 3.712 7 O -0.407 6.407 8 N -0.333 5.333 9 C -0.006 4.006 10 C -0.178 4.178 11 C 0.069 3.931 12 N -0.364 5.364 13 C -0.375 4.375 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.194 4.194 22 C -0.021 4.021 23 N -0.375 5.375 24 C 0.406 3.594 25 O -0.463 6.463 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -18.738 -6.964 0.136 19.990 hybrid contribution 1.008 0.795 0.481 1.371 sum -17.730 -6.169 0.617 18.783 Atomic orbital electron populations 1.21424 0.75372 1.04077 1.01407 1.47073 1.06453 1.05563 1.78699 1.22327 0.86132 0.89008 1.04134 1.21909 0.97209 0.83254 0.98487 0.86328 1.20625 0.79814 0.81745 0.89020 1.90731 1.60042 1.52508 1.37370 1.48206 1.52843 1.15049 1.17221 1.21661 0.92339 1.00127 0.86523 1.22215 0.95252 0.99851 1.00513 1.20157 0.88499 0.93560 0.90924 1.42430 1.02331 1.16622 1.75034 1.19174 0.92732 0.91739 1.33814 0.91180 1.24758 0.95624 0.98337 1.02063 1.69644 0.98431 1.36288 1.53582 0.86283 0.76805 0.84163 0.78991 1.21234 1.21698 1.21237 1.22712 0.93323 1.01503 1.01836 1.22003 0.99650 0.93025 0.87372 1.44852 1.06956 1.06240 1.79499 1.15793 0.81697 0.84614 0.77279 1.90957 1.75836 1.20880 1.58600 0.89492 0.91923 0.92047 0.88584 0.89525 0.91292 0.89332 0.90423 0.91792 0.93322 0.78235 0.93362 0.92074 0.90381 0.90859 0.90575 0.72310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.86 11.22 59.85 0.67 1.53 16 2 N -0.64 -6.39 3.36 -186.46 -0.63 -7.01 16 3 C 0.11 0.81 7.07 -2.98 -0.02 0.79 16 4 C 0.10 0.94 3.16 -68.20 -0.22 0.73 16 5 H 0.12 0.83 6.64 -51.93 -0.34 0.48 16 6 C 0.50 6.14 6.81 -10.98 -0.07 6.06 16 7 O -0.53 -8.58 16.00 5.56 0.09 -8.49 16 8 N -0.60 -6.85 2.97 -172.74 -0.51 -7.36 16 9 C 0.12 1.45 6.43 -3.71 -0.02 1.43 16 10 C -0.14 -2.07 5.55 -26.61 -0.15 -2.22 16 11 C 0.18 3.07 2.73 -67.89 -0.19 2.89 16 12 N -0.72 -16.71 5.12 -53.38 -0.27 -16.98 16 13 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 14 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 17 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.15 -2.17 5.66 -26.59 -0.15 -2.32 16 22 C 0.10 1.01 6.25 -3.69 -0.02 0.98 16 23 N -0.71 -8.17 5.62 -59.32 -0.33 -8.50 16 24 C 0.71 9.44 8.61 -88.40 -0.76 8.68 16 25 O -0.58 -10.02 17.29 5.29 0.09 -9.92 16 26 H 0.09 0.73 7.52 -51.93 -0.39 0.34 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.35 8.14 -51.94 -0.42 -0.07 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.62 7.72 -51.93 -0.40 0.22 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.19 7.01 -51.92 -0.36 0.82 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.38 9.65 7.80 -40.82 -0.32 9.33 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.53 5.41 -51.93 -0.28 0.25 16 42 H 0.43 4.69 8.96 -40.82 -0.37 4.32 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -34.88 341.77 -8.13 -43.01 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.24 Total: 8.50 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -1.18 Total: 11.68 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -1.02 Total: -66.26 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.88 -8.13 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996884805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.509 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds