Wall clock time and date at job start Tue Mar 31 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47387 * 125.37513 * 2 1 4 4 C 1.54107 * 103.70231 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.55306 * 241.22440 * 4 3 2 6 6 C 1.50699 * 110.55136 * 118.55497 * 4 3 2 7 7 O 1.21281 * 120.00454 * 262.00501 * 6 4 3 8 8 N 1.34783 * 120.00027 * 81.99821 * 6 4 3 9 9 C 1.46925 * 120.63284 * 180.02562 * 8 6 4 10 10 C 1.53190 * 108.77346 * 233.63531 * 9 8 6 11 11 C 1.53037 * 109.31152 * 305.35985 * 10 9 8 12 12 N 1.46504 * 109.45927 * 181.38584 * 11 10 9 13 13 C 1.36943 * 119.99781 * 154.97630 * 12 11 10 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 11 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48496 * 109.47031 * 59.99836 * 17 15 13 19 19 H 1.48497 * 109.47267 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47169 * 300.00118 * 17 15 13 21 21 C 1.53042 * 109.52514 * 61.37952 * 11 10 9 22 22 C 1.46921 * 120.62757 * 0.02807 * 8 6 4 23 23 N 1.47058 * 103.98792 * 359.89013 * 4 3 2 24 24 C 1.33943 * 109.18180 * 0.07359 * 23 4 3 25 25 O 1.21588 * 123.04373 * 180.02562 * 24 23 4 26 26 H 1.09005 * 109.46516 * 180.11723 * 1 2 3 27 27 H 1.08997 * 109.46879 * 300.11239 * 1 2 3 28 28 H 1.08988 * 109.46935 * 60.11463 * 1 2 3 29 29 H 1.09002 * 110.66062 * 61.48552 * 3 2 1 30 30 H 1.09000 * 110.59484 * 298.56218 * 3 2 1 31 31 H 1.09001 * 109.58722 * 113.84065 * 9 8 6 32 32 H 1.09010 * 109.70155 * 353.48791 * 9 8 6 33 33 H 1.09003 * 109.49664 * 185.41116 * 10 9 8 34 34 H 1.09000 * 109.52579 * 65.33362 * 10 9 8 35 35 H 1.08994 * 109.46263 * 301.36353 * 11 10 9 36 36 H 0.97000 * 120.00410 * 334.97955 * 12 11 10 37 37 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.50310 * 58.57405 * 21 11 10 39 39 H 1.09007 * 109.49832 * 178.67844 * 21 11 10 40 40 H 1.09005 * 109.58622 * 246.15581 * 22 8 6 41 41 H 1.09006 * 109.58894 * 6.43509 * 22 8 6 42 42 H 0.97005 * 125.40450 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2018 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2878 0.9477 0.8938 6 6 4.4907 1.0644 -1.2403 7 8 4.5691 0.3160 -2.1914 8 7 5.0656 2.2824 -1.2920 9 6 5.7901 2.7178 -2.4937 10 6 7.1962 3.1683 -2.0854 11 6 7.0886 4.2366 -0.9949 12 7 8.4306 4.6937 -0.6253 13 6 8.6052 5.9411 -0.0881 14 1 7.7537 6.5881 0.0628 15 6 9.8774 6.3764 0.2567 16 7 10.9152 5.5882 0.0723 17 14 10.1166 8.0810 0.9824 18 1 9.3441 8.1940 2.2456 19 1 11.5580 8.3019 1.2628 20 1 9.6376 9.1020 0.0162 21 6 6.3953 3.6446 0.2344 22 6 4.9795 3.1999 -0.1477 23 7 3.5538 -0.8247 0.0018 24 6 2.2412 -1.0917 0.0020 25 8 1.7947 -2.2226 0.0042 26 1 -0.3632 -1.0277 0.0021 27 1 -0.3633 0.5156 0.8890 28 1 -0.3633 0.5120 -0.8909 29 1 2.1439 1.7972 0.8962 30 1 2.1425 1.7968 -0.8962 31 1 5.2605 3.5493 -2.9586 32 1 5.8622 1.8901 -3.1995 33 1 7.7111 3.5835 -2.9518 34 1 7.7561 2.3143 -1.7043 35 1 6.5078 5.0798 -1.3685 36 1 9.1954 4.1128 -0.7612 37 1 11.8041 5.8922 0.3136 38 1 6.9622 2.7858 0.5937 39 1 6.3399 4.3989 1.0194 40 1 4.3838 4.0707 -0.4216 41 1 4.5143 2.6896 0.6957 42 1 4.2622 -1.4874 0.0024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996884805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:35 Heat of formation + Delta-G solvation = -52.790194 kcal Electronic energy + Delta-G solvation = -24426.763331 eV Core-core repulsion = 20827.729004 eV Total energy + Delta-G solvation = -3599.034327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49361 -40.82369 -38.75143 -37.39395 -36.14984 -35.11187 -33.86741 -32.29094 -31.12279 -30.15468 -28.18869 -26.60253 -25.10580 -24.31636 -23.66764 -21.70493 -21.60523 -20.29962 -19.08874 -18.84487 -18.53478 -17.43586 -17.24499 -16.67152 -16.35786 -16.16288 -15.46864 -15.43437 -15.27668 -15.20168 -14.95159 -14.68583 -14.53493 -14.32773 -13.87996 -13.46276 -13.29395 -13.15665 -13.06355 -12.94048 -12.76917 -12.59166 -12.20050 -12.12059 -11.96152 -11.66515 -11.55317 -11.32547 -11.26373 -10.85147 -10.37148 -9.70382 -9.58875 -8.96747 -7.90023 -5.18368 1.29635 1.51304 1.53353 1.59261 1.60733 1.77065 2.09773 2.59992 2.85011 3.24573 3.30022 3.44101 3.81068 3.86908 3.91788 4.07244 4.14359 4.22932 4.39643 4.46234 4.48929 4.54101 4.68247 4.73555 4.80028 4.86818 4.89806 4.91066 4.96212 5.06771 5.13466 5.34289 5.53652 5.58067 5.61959 5.67893 5.98384 6.30133 6.31923 6.38589 7.02725 7.37794 7.42297 8.15026 8.36350 9.33625 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.003030 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.999229 B = 9238.276507 C = 9547.590871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.637 5.637 3 C 0.108 3.892 4 C 0.104 3.896 5 H 0.152 0.848 6 C 0.503 3.497 7 O -0.577 6.577 8 N -0.596 5.596 9 C 0.123 3.877 10 C -0.129 4.129 11 C 0.171 3.829 12 N -0.740 5.740 13 C -0.232 4.232 14 H 0.083 0.917 15 C -0.080 4.080 16 N -0.974 5.974 17 Si 0.969 3.031 18 H -0.275 1.275 19 H -0.303 1.303 20 H -0.279 1.279 21 C -0.144 4.144 22 C 0.109 3.891 23 N -0.717 5.717 24 C 0.693 3.307 25 O -0.636 6.636 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.142 0.858 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.368 0.632 37 H 0.248 0.752 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.042 -4.398 1.711 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.376 5.376 3 C -0.015 4.015 4 C -0.006 4.006 5 H 0.169 0.831 6 C 0.290 3.710 7 O -0.456 6.456 8 N -0.328 5.328 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.063 3.937 12 N -0.379 5.379 13 C -0.364 4.364 14 H 0.101 0.899 15 C -0.272 4.272 16 N -0.625 5.625 17 Si 0.799 3.201 18 H -0.201 1.201 19 H -0.230 1.230 20 H -0.205 1.205 21 C -0.185 4.185 22 C -0.013 4.013 23 N -0.377 5.377 24 C 0.393 3.607 25 O -0.518 6.518 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.159 0.841 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.200 0.800 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -21.470 -5.118 1.269 22.108 hybrid contribution 1.792 0.228 0.060 1.807 sum -19.679 -4.890 1.328 20.321 Atomic orbital electron populations 1.21640 0.73950 1.03519 1.03670 1.47283 1.07404 1.05430 1.77448 1.22670 0.83931 0.88130 1.06777 1.22172 0.98656 0.81947 0.97789 0.83088 1.21172 0.79348 0.81110 0.89372 1.90723 1.61829 1.53703 1.39322 1.48238 1.52169 1.15213 1.17208 1.21511 0.91038 1.00374 0.87052 1.22064 0.96848 0.98482 0.99391 1.20465 0.86040 0.94368 0.92825 1.42700 1.04282 1.15843 1.75107 1.19621 0.92803 0.92571 1.31375 0.89921 1.25543 0.95730 1.01903 1.04005 1.69815 0.98483 1.38125 1.56110 0.85266 0.75906 0.80268 0.78663 1.20052 1.23027 1.20476 1.22481 0.95790 1.00522 0.99666 1.22131 0.96932 0.94146 0.88043 1.44928 1.06454 1.07481 1.78827 1.16143 0.82440 0.84791 0.77355 1.90908 1.76789 1.23104 1.60957 0.91539 0.88931 0.90412 0.84051 0.88685 0.89209 0.90399 0.91392 0.93429 0.92884 0.80043 0.94313 0.93563 0.91049 0.88205 0.86510 0.72537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.33 11.22 127.77 1.43 2.76 16 2 N -0.64 -10.95 3.36 -862.57 -2.90 -13.85 16 3 C 0.11 1.08 7.07 86.58 0.61 1.69 16 4 C 0.10 1.54 3.16 44.51 0.14 1.68 16 5 H 0.15 1.30 6.64 -2.39 -0.02 1.28 16 6 C 0.50 10.97 6.81 87.66 0.60 11.57 16 7 O -0.58 -18.15 16.00 -3.03 -0.05 -18.20 16 8 N -0.60 -11.70 2.97 -818.81 -2.43 -14.13 16 9 C 0.12 2.86 6.43 86.36 0.56 3.41 16 10 C -0.13 -3.76 5.55 30.67 0.17 -3.59 16 11 C 0.17 5.62 2.73 45.02 0.12 5.75 16 12 N -0.74 -34.15 5.12 -322.81 -1.65 -35.81 16 13 C -0.23 -11.83 9.93 84.03 0.83 -11.00 16 14 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 16 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 17 Si 0.97 43.85 29.55 68.60 2.03 45.88 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.14 -3.70 5.66 30.69 0.17 -3.53 16 22 C 0.11 1.62 6.25 86.38 0.54 2.16 16 23 N -0.72 -15.38 5.62 -460.33 -2.59 -17.97 16 24 C 0.69 17.83 8.61 179.57 1.55 19.38 16 25 O -0.64 -22.15 17.29 -3.99 -0.07 -22.22 16 26 H 0.07 1.07 7.52 -2.38 -0.02 1.05 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.09 0.87 7.72 -2.39 -0.02 0.85 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.03 7.01 -2.38 -0.02 2.01 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.37 19.01 7.80 -92.71 -0.72 18.29 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.12 0.85 5.41 -2.38 -0.01 0.84 16 42 H 0.43 9.20 8.96 -92.70 -0.83 8.37 16 Total: -1.00 -79.86 341.77 -0.69 -80.55 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.50 Total: 27.15 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 7.19 Total: 26.38 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -9.29 Total: -139.53 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.12 Total: -40.42 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -79.86 -0.69 -80.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996884805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.758 kcal (2) G-P(sol) polarization free energy of solvation -79.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds