Wall clock time and date at job start Tue Mar 31 2020 03:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99492 * 2 1 4 4 H 1.48500 * 109.47250 * 269.99701 * 3 2 1 5 5 H 1.48496 * 109.47354 * 30.00009 * 3 2 1 6 6 H 1.48504 * 109.46689 * 149.99932 * 3 2 1 7 7 C 1.38802 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00492 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46237 * 154.99916 * 10 9 7 12 12 C 1.53196 * 109.33748 * 181.36822 * 11 10 9 13 13 N 1.46931 * 108.77131 * 305.41286 * 12 11 10 14 14 C 1.34775 * 120.60689 * 233.57988 * 13 12 11 15 15 O 1.21283 * 120.00376 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99836 * 359.97438 * 14 13 12 17 17 C 1.53005 * 109.47219 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.51914 * 54.99976 * 17 16 14 19 19 C 1.53173 * 109.51971 * 175.12453 * 17 16 14 20 20 C 1.53189 * 109.03186 * 176.82137 * 19 17 16 21 21 C 1.53095 * 109.21435 * 303.11807 * 20 19 17 22 22 O 1.42907 * 109.41391 * 57.57253 * 21 20 19 23 23 C 1.42911 * 114.09644 * 298.84039 * 22 21 20 24 24 C 1.46928 * 118.76737 * 53.55408 * 13 12 11 25 25 C 1.53045 * 109.45604 * 275.06492 * 10 9 7 26 26 H 0.96995 * 120.00128 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99890 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.45030 * 35.03213 * 10 9 7 29 29 H 1.09002 * 109.49756 * 301.33545 * 11 10 9 30 30 H 1.09000 * 109.49883 * 61.40288 * 11 10 9 31 31 H 1.08996 * 109.58760 * 65.17188 * 12 11 10 32 32 H 1.09001 * 109.58519 * 185.59185 * 12 11 10 33 33 H 1.09005 * 109.47141 * 300.00250 * 16 14 13 34 34 H 1.09005 * 109.46868 * 60.00194 * 16 14 13 35 35 H 1.08993 * 109.54899 * 296.75141 * 19 17 16 36 36 H 1.09001 * 109.54355 * 57.01961 * 19 17 16 37 37 H 1.08994 * 109.52668 * 183.17883 * 20 19 17 38 38 H 1.09000 * 109.51751 * 63.05197 * 20 19 17 39 39 H 1.09002 * 109.47562 * 297.58820 * 21 20 19 40 40 H 1.09002 * 109.48902 * 177.55807 * 21 20 19 41 41 H 1.09004 * 109.47704 * 301.17645 * 23 22 21 42 42 H 1.09003 * 109.48633 * 181.15008 * 23 22 21 43 43 H 1.08997 * 109.58597 * 186.62384 * 24 13 12 44 44 H 1.09004 * 109.58075 * 66.20134 * 24 13 12 45 45 H 1.08993 * 109.49877 * 298.56552 * 25 10 9 46 46 H 1.09003 * 109.49434 * 58.63049 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.1802 -4.7525 0.6071 12 6 1.9611 -6.0701 0.6370 13 7 2.4422 -6.3655 -0.7195 14 6 2.1744 -7.5523 -1.2994 15 8 2.5765 -7.7843 -2.4198 16 6 1.3750 -8.5910 -0.5555 17 6 1.2157 -9.8355 -1.4312 18 1 2.1980 -10.1872 -1.7464 19 6 0.5097 -10.9359 -0.6331 20 6 0.2848 -12.1472 -1.5435 21 6 -0.5185 -11.7120 -2.7719 22 8 0.1803 -10.6664 -3.4505 23 6 0.3764 -9.4895 -2.6638 24 6 3.2202 -5.3429 -1.4321 25 6 2.4245 -4.0338 -1.4389 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0016 28 1 2.9680 -3.5505 0.5891 29 1 0.9003 -4.4722 1.6226 30 1 0.2813 -4.8759 0.0029 31 1 2.8107 -5.9760 1.3132 32 1 1.3082 -6.8741 0.9769 33 1 1.8943 -8.8587 0.3648 34 1 0.3915 -8.1881 -0.3137 35 1 1.1297 -11.2262 0.2150 36 1 -0.4513 -10.5670 -0.2747 37 1 -0.2673 -12.9139 -1.0001 38 1 1.2475 -12.5478 -1.8611 39 1 -1.4972 -11.3503 -2.4566 40 1 -0.6440 -12.5611 -3.4439 41 1 -0.5907 -9.0987 -2.3472 42 1 0.8956 -8.7374 -3.2578 43 1 3.3982 -5.6677 -2.4572 44 1 4.1726 -5.1890 -0.9247 45 1 1.5143 -4.1644 -2.0240 46 1 3.0300 -3.2418 -1.8797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997319989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:34 Heat of formation + Delta-G solvation = -87.529049 kcal Electronic energy + Delta-G solvation = -24601.252888 eV Core-core repulsion = 21104.252515 eV Total energy + Delta-G solvation = -3497.000373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44233 -39.22051 -37.40965 -34.60391 -34.52129 -32.41106 -31.99501 -30.86583 -29.41671 -27.65123 -25.19635 -24.87141 -23.40913 -22.73967 -22.25523 -20.49764 -20.01855 -18.78524 -17.23116 -17.00717 -16.51478 -16.16866 -15.82438 -15.38308 -14.85989 -14.74504 -14.57081 -14.15724 -13.83685 -13.62258 -13.49269 -13.26451 -12.90531 -12.82631 -12.58557 -12.48995 -12.06426 -11.92830 -11.51308 -11.43983 -11.19550 -11.05557 -10.93532 -10.88421 -10.81556 -10.48219 -10.44037 -10.27647 -9.93362 -9.72383 -9.63818 -9.52421 -8.93337 -8.50384 -7.00914 -5.80679 -3.09945 2.65979 3.06343 3.40990 3.46290 3.47722 3.76633 4.33353 4.46684 4.54227 4.55448 4.67923 4.75988 4.88536 4.96763 5.15373 5.18757 5.23176 5.28028 5.33327 5.35724 5.40279 5.43798 5.54798 5.56147 5.59341 5.64714 5.73098 5.75823 5.77773 5.87811 5.96071 6.07562 6.12155 6.19612 6.26049 6.41721 6.52607 6.57553 6.89526 7.02132 7.08533 7.50354 7.65965 8.23225 8.37718 9.48985 10.05881 10.40433 11.41916 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.002747 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.340768 B =10189.743629 C =10239.732467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.141 4.141 12 C 0.110 3.890 13 N -0.606 5.606 14 C 0.511 3.489 15 O -0.545 6.545 16 C -0.135 4.135 17 C -0.106 4.106 18 H 0.087 0.913 19 C -0.119 4.119 20 C -0.155 4.155 21 C 0.056 3.944 22 O -0.380 6.380 23 C 0.061 3.939 24 C 0.112 3.888 25 C -0.150 4.150 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 -23.261 1.397 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.180 4.180 12 C -0.013 4.013 13 N -0.339 5.339 14 C 0.300 3.700 15 O -0.423 6.423 16 C -0.175 4.175 17 C -0.125 4.125 18 H 0.105 0.895 19 C -0.156 4.156 20 C -0.193 4.193 21 C -0.021 4.021 22 O -0.299 6.299 23 C -0.015 4.015 24 C -0.011 4.011 25 C -0.191 4.191 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.017 -23.220 0.646 23.252 hybrid contribution -0.015 1.124 0.443 1.208 sum 1.002 -22.097 1.089 22.146 Atomic orbital electron populations 1.69659 1.05128 1.25708 1.57620 1.24748 0.95513 0.97728 1.02941 0.86202 0.78646 0.83858 0.77554 1.21700 1.21779 1.20753 1.19226 0.90978 0.84083 1.42790 0.91173 1.42426 1.05773 0.99722 1.88555 1.20160 0.94331 0.85999 0.92627 1.22216 0.99231 0.94235 1.02282 1.21794 0.98608 0.98145 0.82783 1.48212 1.53913 1.14947 1.16847 1.20620 0.80227 0.82620 0.86582 1.90658 1.53408 1.78922 1.19345 1.21723 1.01374 0.94651 0.99796 1.21549 1.01310 0.94004 0.95638 0.89457 1.21666 1.00823 0.95106 0.98029 1.22176 1.01715 0.98151 0.97235 1.22578 0.94224 0.91031 0.94239 1.87987 1.77339 1.24906 1.39623 1.22885 0.98058 0.87585 0.93006 1.21704 0.93786 0.87835 0.97764 1.22661 1.00150 0.94924 1.01340 0.93486 0.78300 0.93442 0.90463 0.91760 0.91214 0.90154 0.88632 0.88723 0.91325 0.91666 0.90968 0.91027 0.93386 0.89172 0.93808 0.86866 0.89647 0.91905 0.92310 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.50 5.12 -53.39 -0.27 -17.78 16 10 C 0.18 3.32 2.73 -67.89 -0.19 3.14 16 11 C -0.14 -2.06 5.55 -26.61 -0.15 -2.21 16 12 C 0.11 1.24 6.34 -3.71 -0.02 1.22 16 13 N -0.61 -8.03 2.97 -172.76 -0.51 -8.54 16 14 C 0.51 6.79 7.43 -10.98 -0.08 6.70 16 15 O -0.54 -9.01 13.39 5.56 0.07 -8.94 16 16 C -0.14 -1.27 3.53 -27.88 -0.10 -1.37 16 17 C -0.11 -1.06 2.03 -90.48 -0.18 -1.24 16 18 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 19 C -0.12 -0.90 5.32 -26.54 -0.14 -1.04 16 20 C -0.16 -1.15 6.13 -26.58 -0.16 -1.32 16 21 C 0.06 0.49 6.84 37.21 0.25 0.75 16 22 O -0.38 -4.74 10.77 -35.23 -0.38 -5.12 16 23 C 0.06 0.72 5.84 37.20 0.22 0.94 16 24 C 0.11 1.65 6.43 -3.71 -0.02 1.63 16 25 C -0.15 -2.62 5.66 -26.61 -0.15 -2.77 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 27 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 28 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 33 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 34 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 1.62 6.02 -51.93 -0.31 1.31 16 43 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -31.82 355.86 -8.99 -40.81 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.99 Total: 6.86 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.97 Total: -2.66 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.06 Total: -53.39 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.30 Total: -14.06 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.82 -8.99 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997319989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.721 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds