Wall clock time and date at job start Tue Mar 31 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99492 * 2 1 4 4 H 1.48500 * 109.47250 * 269.99701 * 3 2 1 5 5 H 1.48496 * 109.47354 * 30.00009 * 3 2 1 6 6 H 1.48504 * 109.46689 * 149.99932 * 3 2 1 7 7 C 1.38802 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00492 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46237 * 154.99916 * 10 9 7 12 12 C 1.53196 * 109.33748 * 181.36822 * 11 10 9 13 13 N 1.46931 * 108.77131 * 305.41286 * 12 11 10 14 14 C 1.34775 * 120.60689 * 233.57988 * 13 12 11 15 15 O 1.21283 * 120.00376 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99836 * 359.97438 * 14 13 12 17 17 C 1.53005 * 109.47219 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.51914 * 54.99976 * 17 16 14 19 19 C 1.53173 * 109.51971 * 175.12453 * 17 16 14 20 20 C 1.53189 * 109.03186 * 176.82137 * 19 17 16 21 21 C 1.53095 * 109.21435 * 303.11807 * 20 19 17 22 22 O 1.42907 * 109.41391 * 57.57253 * 21 20 19 23 23 C 1.42911 * 114.09644 * 298.84039 * 22 21 20 24 24 C 1.46928 * 118.76737 * 53.55408 * 13 12 11 25 25 C 1.53045 * 109.45604 * 275.06492 * 10 9 7 26 26 H 0.96995 * 120.00128 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99890 * 359.97438 * 9 7 2 28 28 H 1.08995 * 109.45030 * 35.03213 * 10 9 7 29 29 H 1.09002 * 109.49756 * 301.33545 * 11 10 9 30 30 H 1.09000 * 109.49883 * 61.40288 * 11 10 9 31 31 H 1.08996 * 109.58760 * 65.17188 * 12 11 10 32 32 H 1.09001 * 109.58519 * 185.59185 * 12 11 10 33 33 H 1.09005 * 109.47141 * 300.00250 * 16 14 13 34 34 H 1.09005 * 109.46868 * 60.00194 * 16 14 13 35 35 H 1.08993 * 109.54899 * 296.75141 * 19 17 16 36 36 H 1.09001 * 109.54355 * 57.01961 * 19 17 16 37 37 H 1.08994 * 109.52668 * 183.17883 * 20 19 17 38 38 H 1.09000 * 109.51751 * 63.05197 * 20 19 17 39 39 H 1.09002 * 109.47562 * 297.58820 * 21 20 19 40 40 H 1.09002 * 109.48902 * 177.55807 * 21 20 19 41 41 H 1.09004 * 109.47704 * 301.17645 * 23 22 21 42 42 H 1.09003 * 109.48633 * 181.15008 * 23 22 21 43 43 H 1.08997 * 109.58597 * 186.62384 * 24 13 12 44 44 H 1.09004 * 109.58075 * 66.20134 * 24 13 12 45 45 H 1.08993 * 109.49877 * 298.56552 * 25 10 9 46 46 H 1.09003 * 109.49434 * 58.63049 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.1802 -4.7525 0.6071 12 6 1.9611 -6.0701 0.6370 13 7 2.4422 -6.3655 -0.7195 14 6 2.1744 -7.5523 -1.2994 15 8 2.5765 -7.7843 -2.4198 16 6 1.3750 -8.5910 -0.5555 17 6 1.2157 -9.8355 -1.4312 18 1 2.1980 -10.1872 -1.7464 19 6 0.5097 -10.9359 -0.6331 20 6 0.2848 -12.1472 -1.5435 21 6 -0.5185 -11.7120 -2.7719 22 8 0.1803 -10.6664 -3.4505 23 6 0.3764 -9.4895 -2.6638 24 6 3.2202 -5.3429 -1.4321 25 6 2.4245 -4.0338 -1.4389 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0016 28 1 2.9680 -3.5505 0.5891 29 1 0.9003 -4.4722 1.6226 30 1 0.2813 -4.8759 0.0029 31 1 2.8107 -5.9760 1.3132 32 1 1.3082 -6.8741 0.9769 33 1 1.8943 -8.8587 0.3648 34 1 0.3915 -8.1881 -0.3137 35 1 1.1297 -11.2262 0.2150 36 1 -0.4513 -10.5670 -0.2747 37 1 -0.2673 -12.9139 -1.0001 38 1 1.2475 -12.5478 -1.8611 39 1 -1.4972 -11.3503 -2.4566 40 1 -0.6440 -12.5611 -3.4439 41 1 -0.5907 -9.0987 -2.3472 42 1 0.8956 -8.7374 -3.2578 43 1 3.3982 -5.6677 -2.4572 44 1 4.1726 -5.1890 -0.9247 45 1 1.5143 -4.1644 -2.0240 46 1 3.0300 -3.2418 -1.8797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997319989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:33 Heat of formation + Delta-G solvation = -108.380223 kcal Electronic energy + Delta-G solvation = -24602.157063 eV Core-core repulsion = 21104.252515 eV Total energy + Delta-G solvation = -3497.904548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44048 -40.11050 -38.67895 -36.14538 -35.40927 -33.83669 -33.05873 -32.01666 -31.07900 -28.58363 -26.49038 -25.93056 -24.60456 -24.11877 -23.28820 -21.59411 -20.94354 -19.97848 -19.03253 -18.15582 -17.32333 -17.00464 -16.87641 -16.67355 -16.31011 -15.60154 -15.48817 -15.42445 -15.26911 -15.17652 -14.68729 -14.47097 -13.97348 -13.70388 -13.53888 -13.47523 -13.27879 -13.09839 -12.86397 -12.69011 -12.56131 -12.21380 -12.16922 -12.08337 -11.95723 -11.87831 -11.71437 -11.67766 -11.34218 -11.23077 -10.90238 -10.63529 -10.35365 -9.63294 -9.01123 -7.94582 -5.22777 1.46959 1.48267 1.56288 1.65434 2.04929 2.55883 2.99660 3.38620 3.49534 3.78749 3.82497 3.85520 3.90601 3.99715 4.06796 4.17256 4.19332 4.27489 4.35062 4.41131 4.43470 4.56802 4.60805 4.66381 4.70383 4.77246 4.83390 4.83750 4.88220 4.90907 4.99682 5.00325 5.10249 5.13944 5.14579 5.29755 5.34506 5.45049 5.49081 5.54045 5.63414 6.28019 6.30953 6.48552 7.21222 7.34068 8.10613 8.32802 9.28921 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.002747 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.340768 B =10189.743629 C =10239.732467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.738 5.738 10 C 0.172 3.828 11 C -0.132 4.132 12 C 0.116 3.884 13 N -0.609 5.609 14 C 0.505 3.495 15 O -0.585 6.585 16 C -0.128 4.128 17 C -0.101 4.101 18 H 0.064 0.936 19 C -0.114 4.114 20 C -0.153 4.153 21 C 0.047 3.953 22 O -0.411 6.411 23 C 0.060 3.940 24 C 0.121 3.879 25 C -0.138 4.138 26 H 0.250 0.750 27 H 0.372 0.628 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 -25.302 3.581 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.171 4.171 12 C -0.007 4.007 13 N -0.341 5.341 14 C 0.295 3.705 15 O -0.466 6.466 16 C -0.167 4.167 17 C -0.120 4.120 18 H 0.082 0.918 19 C -0.151 4.151 20 C -0.191 4.191 21 C -0.029 4.029 22 O -0.330 6.330 23 C -0.016 4.016 24 C -0.002 4.002 25 C -0.179 4.179 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.356 -25.308 2.849 25.504 hybrid contribution -0.096 1.678 -0.318 1.710 sum 1.260 -23.630 2.531 23.798 Atomic orbital electron populations 1.69809 1.06565 1.25934 1.59836 1.25522 0.96335 1.00991 1.04077 0.85202 0.77862 0.79858 0.77244 1.21870 1.22282 1.19256 1.19606 0.91392 0.85261 1.40503 0.90660 1.42660 1.05431 1.01042 1.88538 1.20435 0.94728 0.85193 0.93232 1.22107 0.98520 0.94636 1.01842 1.21950 0.99590 0.97265 0.81859 1.48303 1.53681 1.14608 1.17538 1.21407 0.79772 0.83040 0.86237 1.90656 1.54917 1.79676 1.21308 1.21794 1.01935 0.92847 1.00110 1.21469 1.00003 0.95258 0.95274 0.91769 1.21674 1.01508 0.93942 0.98005 1.22176 1.01324 0.98808 0.96779 1.22836 0.94591 0.90377 0.95119 1.87934 1.78127 1.25826 1.41146 1.22788 0.98482 0.87060 0.93311 1.21455 0.94158 0.86761 0.97864 1.22444 0.99250 0.96050 1.00124 0.94129 0.79687 0.93307 0.89926 0.92640 0.89317 0.86101 0.85301 0.86628 0.89422 0.90235 0.88540 0.91986 0.92370 0.88186 0.92851 0.90327 0.90921 0.90330 0.94348 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 45.85 29.55 68.60 2.03 47.87 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.24 -12.80 9.93 84.03 0.83 -11.97 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -36.00 5.12 -322.82 -1.65 -37.65 16 10 C 0.17 6.31 2.73 45.02 0.12 6.43 16 11 C -0.13 -3.61 5.55 30.67 0.17 -3.44 16 12 C 0.12 2.17 6.34 86.36 0.55 2.72 16 13 N -0.61 -14.86 2.97 -818.88 -2.43 -17.29 16 14 C 0.50 12.59 7.43 87.66 0.65 13.24 16 15 O -0.58 -19.55 13.39 -3.04 -0.04 -19.59 16 16 C -0.13 -1.94 3.53 29.85 0.11 -1.84 16 17 C -0.10 -1.81 2.03 -10.70 -0.02 -1.84 16 18 H 0.06 1.46 7.96 -2.39 -0.02 1.44 16 19 C -0.11 -1.31 5.32 30.72 0.16 -1.15 16 20 C -0.15 -1.87 6.13 30.69 0.19 -1.68 16 21 C 0.05 0.75 6.84 72.01 0.49 1.24 16 22 O -0.41 -10.26 10.77 -148.98 -1.60 -11.86 16 23 C 0.06 1.41 5.84 72.01 0.42 1.83 16 24 C 0.12 3.51 6.43 86.36 0.56 4.06 16 25 C -0.14 -4.88 5.66 30.67 0.17 -4.70 16 26 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.37 19.64 7.80 -92.71 -0.72 18.91 16 28 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.37 5.93 -2.39 -0.01 1.36 16 33 H 0.13 1.18 7.94 -2.38 -0.02 1.16 16 34 H 0.12 1.36 7.69 -2.38 -0.02 1.34 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.08 2.37 6.02 -2.39 -0.01 2.36 16 43 H 0.07 2.31 7.00 -2.39 -0.02 2.30 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -72.13 355.86 1.68 -70.45 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.23 Total: 27.83 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.87 Total: -1.02 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.80 Total: -113.68 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.64 Total: -31.45 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.13 1.68 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997319989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.929 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds