Wall clock time and date at job start Tue Mar 31 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.49600 * 34.93380 * 10 9 7 12 12 C 1.53044 * 109.49667 * 274.84022 * 10 9 7 13 13 C 1.53048 * 109.53416 * 178.68484 * 12 10 9 14 14 C 1.53181 * 109.31363 * 61.36374 * 13 12 10 15 15 N 1.46926 * 108.77805 * 305.35932 * 14 13 12 16 16 C 1.34776 * 120.63705 * 233.59226 * 15 14 13 17 17 O 1.21282 * 120.00128 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.99821 * 0.02562 * 16 15 14 19 19 C 1.52996 * 109.47031 * 180.02562 * 18 16 15 20 20 C 1.53008 * 109.46781 * 180.02562 * 19 18 16 21 21 H 1.08993 * 110.75034 * 57.01915 * 20 19 18 22 22 C 1.55309 * 110.84460 * 180.71785 * 20 19 18 23 23 C 1.54947 * 100.94006 * 152.32209 * 22 20 19 24 24 O 1.43651 * 105.13675 * 323.55349 * 23 22 20 25 25 C 1.43236 * 109.96871 * 24.43001 * 24 23 22 26 26 C 1.46929 * 118.73537 * 53.60962 * 15 14 13 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.45590 * 298.70022 * 12 10 9 30 30 H 1.08998 * 109.46325 * 58.66468 * 12 10 9 31 31 H 1.08991 * 109.49560 * 301.40616 * 13 12 10 32 32 H 1.08999 * 109.51669 * 181.33119 * 13 12 10 33 33 H 1.09008 * 109.58678 * 185.57646 * 14 13 12 34 34 H 1.09000 * 109.59429 * 65.15115 * 14 13 12 35 35 H 1.09005 * 109.47343 * 300.00448 * 18 16 15 36 36 H 1.09001 * 109.46886 * 59.99718 * 18 16 15 37 37 H 1.08992 * 109.47482 * 299.99708 * 19 18 16 38 38 H 1.08997 * 109.47111 * 60.00337 * 19 18 16 39 39 H 1.08998 * 111.12040 * 270.24114 * 22 20 19 40 40 H 1.08998 * 111.12882 * 34.40395 * 22 20 19 41 41 H 1.08994 * 110.30662 * 204.63699 * 23 22 20 42 42 H 1.09007 * 110.39038 * 82.51082 * 23 22 20 43 43 H 1.09005 * 109.82431 * 238.77439 * 25 24 23 44 44 H 1.09003 * 109.90724 * 117.84652 * 25 24 23 45 45 H 1.09002 * 109.58756 * 186.60036 * 26 15 14 46 46 H 1.09006 * 109.69804 * 66.25133 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5641 -3.2073 -0.5891 12 6 4.2625 -2.9739 1.4365 13 6 4.9989 -4.3156 1.4349 14 6 6.3977 -4.1250 0.8403 15 7 6.2676 -3.5066 -0.4861 16 6 6.8410 -4.0721 -1.5668 17 8 6.7267 -3.5515 -2.6562 18 6 7.6243 -5.3514 -1.4214 19 6 8.1657 -5.7759 -2.7880 20 6 8.9604 -7.0751 -2.6404 21 1 8.3426 -7.8578 -2.2005 22 6 9.5408 -7.5263 -4.0085 23 6 10.7945 -8.3135 -3.5508 24 8 11.2953 -7.5930 -2.4135 25 6 10.2366 -6.8463 -1.8025 26 6 5.5008 -2.2596 -0.6120 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0014 29 1 4.8316 -2.2480 2.0174 30 1 3.2759 -3.1017 1.8818 31 1 4.4429 -5.0349 0.8338 32 1 5.0851 -4.6849 2.4568 33 1 6.8894 -5.0933 0.7454 34 1 6.9857 -3.4765 1.4897 35 1 8.4559 -5.1923 -0.7349 36 1 6.9738 -6.1331 -1.0290 37 1 7.3344 -5.9350 -3.4747 38 1 8.8163 -4.9941 -3.1798 39 1 8.8416 -8.1739 -4.5374 40 1 9.8178 -6.6677 -4.6202 41 1 11.5403 -8.3321 -4.3454 42 1 10.5215 -9.3294 -3.2650 43 1 10.4888 -5.7859 -1.7948 44 1 10.0768 -7.1957 -0.7824 45 1 5.4007 -1.9969 -1.6651 46 1 6.0147 -1.4573 -0.0825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998854351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:14 Heat of formation + Delta-G solvation = -81.720605 kcal Electronic energy + Delta-G solvation = -24264.914822 eV Core-core repulsion = 20768.166322 eV Total energy + Delta-G solvation = -3496.748500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31067 -39.64060 -37.51877 -34.83529 -34.63425 -32.27507 -31.53123 -31.16455 -29.40525 -28.46348 -25.64812 -24.45508 -23.41093 -22.49653 -21.97543 -20.77655 -20.06365 -18.85378 -17.67015 -17.30802 -17.09566 -16.11043 -15.75942 -15.59528 -15.04636 -14.74706 -14.42142 -14.10296 -13.89333 -13.69759 -13.50915 -13.44103 -13.34084 -12.76945 -12.70509 -12.48669 -12.30135 -11.93491 -11.69893 -11.49939 -11.24440 -11.11129 -11.08356 -11.02449 -10.87501 -10.70225 -10.53301 -10.44143 -10.11272 -9.87133 -9.70232 -9.61000 -8.96066 -8.50154 -7.32059 -5.79804 -3.16460 2.67210 3.01417 3.36282 3.39675 3.44523 3.52817 4.05180 4.24485 4.49149 4.56819 4.57087 4.74237 4.81140 4.84944 4.89597 4.99319 5.06769 5.15648 5.22828 5.28768 5.32998 5.35865 5.38204 5.45723 5.48542 5.50781 5.54403 5.64735 5.68719 5.70028 5.86658 5.89056 6.00826 6.02154 6.08418 6.27808 6.42004 6.57109 6.63106 6.76439 6.91764 7.48675 7.94863 8.23557 8.38569 9.16131 9.88586 10.07420 11.38249 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.002747 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.642171 B =10191.813860 C =10503.553551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.058 0.942 12 C -0.138 4.138 13 C -0.134 4.134 14 C 0.107 3.893 15 N -0.607 5.607 16 C 0.511 3.489 17 O -0.543 6.543 18 C -0.141 4.141 19 C -0.093 4.093 20 C -0.123 4.123 21 H 0.087 0.913 22 C -0.153 4.153 23 C 0.050 3.950 24 O -0.387 6.387 25 C 0.052 3.948 26 C 0.102 3.898 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.065 -16.736 -1.227 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.340 5.340 16 C 0.299 3.701 17 O -0.420 6.420 18 C -0.181 4.181 19 C -0.131 4.131 20 C -0.142 4.142 21 H 0.105 0.895 22 C -0.190 4.190 23 C -0.026 4.026 24 O -0.307 6.307 25 C -0.024 4.024 26 C -0.021 4.021 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.948 -16.502 -1.750 26.725 hybrid contribution 0.159 1.241 0.209 1.268 sum 21.107 -15.262 -1.541 26.092 Atomic orbital electron populations 1.69699 1.05109 1.25889 1.57292 1.24672 0.95241 0.97242 1.01862 0.86553 0.79169 0.84931 0.77881 1.20973 1.21715 1.20313 1.19026 0.80287 0.94734 1.43312 0.89191 1.42674 1.04102 1.01725 1.90287 1.20448 0.90073 0.89645 0.93557 0.92363 1.22248 1.00632 0.94766 1.00184 1.21931 0.95304 0.99382 1.00641 1.21792 0.98128 0.98009 0.83667 1.48113 1.52241 1.25819 1.07844 1.20632 0.79501 0.86115 0.83814 1.90705 1.61012 1.64379 1.25907 1.21740 1.00420 0.95929 0.99968 1.21314 1.00177 0.95490 0.96148 1.22800 0.96814 0.98807 0.95783 0.89476 1.23326 0.97357 1.00988 0.97353 1.23374 0.95689 0.95222 0.88333 1.88398 1.34044 1.63931 1.44316 1.23283 0.86093 0.96555 0.96480 1.21987 0.92142 0.84654 1.03295 0.93004 0.80594 0.92586 0.91068 0.91668 0.91159 0.90128 0.91385 0.89046 0.88768 0.90443 0.90715 0.89735 0.89987 0.89824 0.92217 0.91021 0.91405 0.88863 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.06 27.73 -169.99 -4.71 17.35 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.43 4.93 -53.31 -0.26 -17.69 16 10 C 0.17 3.28 2.92 -67.81 -0.20 3.08 16 11 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 12 C -0.14 -2.21 5.47 -26.68 -0.15 -2.36 16 13 C -0.13 -1.55 6.08 -26.61 -0.16 -1.72 16 14 C 0.11 1.08 6.34 -3.72 -0.02 1.05 16 15 N -0.61 -8.17 2.97 -172.77 -0.51 -8.69 16 16 C 0.51 6.96 7.70 -10.98 -0.08 6.88 16 17 O -0.54 -9.63 15.40 5.56 0.09 -9.55 16 18 C -0.14 -1.22 3.89 -27.88 -0.11 -1.33 16 19 C -0.09 -0.82 3.89 -26.73 -0.10 -0.92 16 20 C -0.12 -0.86 3.03 -88.67 -0.27 -1.13 16 21 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 22 C -0.15 -1.00 6.62 -24.48 -0.16 -1.17 16 23 C 0.05 0.35 7.78 38.19 0.30 0.65 16 24 O -0.39 -3.77 11.36 -35.23 -0.40 -4.17 16 25 C 0.05 0.40 6.57 37.88 0.25 0.65 16 26 C 0.10 1.70 5.90 -3.71 -0.02 1.67 16 27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.36 8.31 5.66 -40.82 -0.23 8.07 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.57 5.93 -51.92 -0.31 0.27 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.62 7.28 -51.93 -0.38 0.24 16 36 H 0.09 0.67 7.69 -51.93 -0.40 0.27 16 37 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.57 8.04 -51.93 -0.42 0.16 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.07 0.56 7.73 -51.93 -0.40 0.16 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 1.75 7.01 -51.93 -0.36 1.39 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -33.78 358.67 -8.61 -42.39 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.00 Total: 4.89 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.99 Total: -1.53 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.00 Total: -54.79 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.31 Total: -13.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.78 -8.61 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998854351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.331 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds