Wall clock time and date at job start Tue Mar 31 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.49600 * 34.93380 * 10 9 7 12 12 C 1.53044 * 109.49667 * 274.84022 * 10 9 7 13 13 C 1.53048 * 109.53416 * 178.68484 * 12 10 9 14 14 C 1.53181 * 109.31363 * 61.36374 * 13 12 10 15 15 N 1.46926 * 108.77805 * 305.35932 * 14 13 12 16 16 C 1.34776 * 120.63705 * 233.59226 * 15 14 13 17 17 O 1.21282 * 120.00128 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.99821 * 0.02562 * 16 15 14 19 19 C 1.52996 * 109.47031 * 180.02562 * 18 16 15 20 20 C 1.53008 * 109.46781 * 180.02562 * 19 18 16 21 21 H 1.08993 * 110.75034 * 57.01915 * 20 19 18 22 22 C 1.55309 * 110.84460 * 180.71785 * 20 19 18 23 23 C 1.54947 * 100.94006 * 152.32209 * 22 20 19 24 24 O 1.43651 * 105.13675 * 323.55349 * 23 22 20 25 25 C 1.43236 * 109.96871 * 24.43001 * 24 23 22 26 26 C 1.46929 * 118.73537 * 53.60962 * 15 14 13 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.45590 * 298.70022 * 12 10 9 30 30 H 1.08998 * 109.46325 * 58.66468 * 12 10 9 31 31 H 1.08991 * 109.49560 * 301.40616 * 13 12 10 32 32 H 1.08999 * 109.51669 * 181.33119 * 13 12 10 33 33 H 1.09008 * 109.58678 * 185.57646 * 14 13 12 34 34 H 1.09000 * 109.59429 * 65.15115 * 14 13 12 35 35 H 1.09005 * 109.47343 * 300.00448 * 18 16 15 36 36 H 1.09001 * 109.46886 * 59.99718 * 18 16 15 37 37 H 1.08992 * 109.47482 * 299.99708 * 19 18 16 38 38 H 1.08997 * 109.47111 * 60.00337 * 19 18 16 39 39 H 1.08998 * 111.12040 * 270.24114 * 22 20 19 40 40 H 1.08998 * 111.12882 * 34.40395 * 22 20 19 41 41 H 1.08994 * 110.30662 * 204.63699 * 23 22 20 42 42 H 1.09007 * 110.39038 * 82.51082 * 23 22 20 43 43 H 1.09005 * 109.82431 * 238.77439 * 25 24 23 44 44 H 1.09003 * 109.90724 * 117.84652 * 25 24 23 45 45 H 1.09002 * 109.58756 * 186.60036 * 26 15 14 46 46 H 1.09006 * 109.69804 * 66.25133 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5641 -3.2073 -0.5891 12 6 4.2625 -2.9739 1.4365 13 6 4.9989 -4.3156 1.4349 14 6 6.3977 -4.1250 0.8403 15 7 6.2676 -3.5066 -0.4861 16 6 6.8410 -4.0721 -1.5668 17 8 6.7267 -3.5515 -2.6562 18 6 7.6243 -5.3514 -1.4214 19 6 8.1657 -5.7759 -2.7880 20 6 8.9604 -7.0751 -2.6404 21 1 8.3426 -7.8578 -2.2005 22 6 9.5408 -7.5263 -4.0085 23 6 10.7945 -8.3135 -3.5508 24 8 11.2953 -7.5930 -2.4135 25 6 10.2366 -6.8463 -1.8025 26 6 5.5008 -2.2596 -0.6120 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0014 29 1 4.8316 -2.2480 2.0174 30 1 3.2759 -3.1017 1.8818 31 1 4.4429 -5.0349 0.8338 32 1 5.0851 -4.6849 2.4568 33 1 6.8894 -5.0933 0.7454 34 1 6.9857 -3.4765 1.4897 35 1 8.4559 -5.1923 -0.7349 36 1 6.9738 -6.1331 -1.0290 37 1 7.3344 -5.9350 -3.4747 38 1 8.8163 -4.9941 -3.1798 39 1 8.8416 -8.1739 -4.5374 40 1 9.8178 -6.6677 -4.6202 41 1 11.5403 -8.3321 -4.3454 42 1 10.5215 -9.3294 -3.2650 43 1 10.4888 -5.7859 -1.7948 44 1 10.0768 -7.1957 -0.7824 45 1 5.4007 -1.9969 -1.6651 46 1 6.0147 -1.4573 -0.0825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998854351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:14 Heat of formation + Delta-G solvation = -105.165977 kcal Electronic energy + Delta-G solvation = -24265.931489 eV Core-core repulsion = 20768.166322 eV Total energy + Delta-G solvation = -3497.765168 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31955 -40.31545 -38.79693 -36.31807 -35.52100 -33.94287 -32.92024 -31.98874 -30.65101 -29.39382 -26.64728 -25.82642 -24.67366 -23.33606 -23.10795 -21.65960 -21.19612 -20.10742 -19.48119 -18.23296 -17.73246 -16.99895 -16.75332 -16.63222 -16.44888 -15.88935 -15.62615 -15.29981 -15.13890 -14.80712 -14.72339 -14.44033 -14.18627 -14.00789 -13.99739 -13.71914 -13.14458 -12.99355 -12.97637 -12.54175 -12.49211 -12.29133 -12.20031 -11.94718 -11.90572 -11.84279 -11.75259 -11.69902 -11.58417 -11.48794 -10.97918 -10.78689 -10.43499 -9.69070 -9.33237 -8.05638 -5.40210 1.35388 1.39734 1.46228 1.64146 1.98043 2.45671 2.99527 3.25244 3.49471 3.50176 3.56857 3.82994 3.96207 3.99292 4.01987 4.12016 4.21651 4.24625 4.27454 4.33822 4.34872 4.44550 4.55453 4.63146 4.69571 4.76351 4.81159 4.84841 4.86691 4.91179 4.97305 5.00742 5.05508 5.10111 5.16581 5.23706 5.39259 5.39737 5.48836 5.52513 5.73715 6.09380 6.17666 6.46936 7.02886 7.19345 7.77606 7.97248 9.15707 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.002747 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.642171 B =10191.813860 C =10503.553551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.955 3.045 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.248 1.248 7 C -0.229 4.229 8 H 0.054 0.946 9 N -0.750 5.750 10 C 0.169 3.831 11 H 0.030 0.970 12 C -0.131 4.131 13 C -0.126 4.126 14 C 0.105 3.895 15 N -0.607 5.607 16 C 0.503 3.497 17 O -0.594 6.594 18 C -0.130 4.130 19 C -0.089 4.089 20 C -0.114 4.114 21 H 0.105 0.895 22 C -0.154 4.154 23 C 0.046 3.954 24 O -0.414 6.414 25 C 0.048 3.952 26 C 0.113 3.887 27 H 0.258 0.742 28 H 0.366 0.634 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.092 -18.118 0.364 30.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.782 3.218 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.172 1.172 7 C -0.360 4.360 8 H 0.072 0.928 9 N -0.394 5.394 10 C 0.061 3.939 11 H 0.048 0.952 12 C -0.171 4.171 13 C -0.165 4.165 14 C -0.016 4.016 15 N -0.340 5.340 16 C 0.294 3.706 17 O -0.475 6.475 18 C -0.170 4.170 19 C -0.127 4.127 20 C -0.132 4.132 21 H 0.123 0.877 22 C -0.192 4.192 23 C -0.029 4.029 24 O -0.334 6.334 25 C -0.028 4.028 26 C -0.011 4.011 27 H 0.067 0.933 28 H 0.199 0.801 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.039 -17.942 -0.126 29.997 hybrid contribution -0.806 1.560 -0.330 1.787 sum 23.233 -16.383 -0.456 28.432 Atomic orbital electron populations 1.69881 1.07127 1.26736 1.59571 1.25512 0.96149 1.01297 1.02559 0.85406 0.78821 0.79551 0.77975 1.20875 1.22016 1.17245 1.18938 0.82343 0.93328 1.41404 0.92817 1.42664 1.02578 1.03696 1.90461 1.20622 0.90664 0.87153 0.95491 0.95212 1.22073 1.00025 0.97844 0.97147 1.21901 0.95621 0.96136 1.02803 1.22119 0.97419 1.00386 0.81715 1.48239 1.51393 1.24788 1.09584 1.21599 0.79069 0.87106 0.82841 1.90688 1.62870 1.65982 1.27965 1.21808 1.01030 0.93545 1.00569 1.21220 0.99440 0.96003 0.96000 1.22734 0.96513 0.98034 0.95950 0.87661 1.23341 0.97584 1.00871 0.97361 1.23510 0.95898 0.95586 0.87953 1.88367 1.35398 1.64466 1.45188 1.23394 0.85780 0.96294 0.97305 1.21587 0.91248 0.86997 1.01291 0.93283 0.80092 0.91692 0.94084 0.92245 0.87901 0.85833 0.89455 0.85992 0.85962 0.92167 0.92571 0.88491 0.91030 0.89328 0.90969 0.91515 0.89621 0.91824 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.96 46.03 27.73 68.60 1.90 47.93 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 7 C -0.23 -13.25 10.41 84.04 0.88 -12.38 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.75 -35.47 4.93 -322.57 -1.59 -37.06 16 10 C 0.17 6.46 2.92 45.07 0.13 6.59 16 11 H 0.03 1.29 8.08 -2.38 -0.02 1.27 16 12 C -0.13 -4.04 5.47 30.63 0.17 -3.88 16 13 C -0.13 -2.49 6.08 30.67 0.19 -2.31 16 14 C 0.10 1.61 6.34 86.36 0.55 2.16 16 15 N -0.61 -14.95 2.97 -818.91 -2.43 -17.38 16 16 C 0.50 12.82 7.70 87.66 0.67 13.50 16 17 O -0.59 -21.30 15.40 -3.04 -0.05 -21.35 16 18 C -0.13 -1.79 3.89 29.85 0.12 -1.68 16 19 C -0.09 -1.39 3.89 30.60 0.12 -1.27 16 20 C -0.11 -1.26 3.03 -9.53 -0.03 -1.29 16 21 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 22 C -0.15 -1.76 6.62 32.05 0.21 -1.55 16 23 C 0.05 0.56 7.78 72.65 0.56 1.13 16 24 O -0.41 -7.21 11.36 -148.98 -1.69 -8.91 16 25 C 0.05 0.60 6.57 72.45 0.48 1.08 16 26 C 0.11 3.68 5.90 86.36 0.51 4.19 16 27 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 28 H 0.37 16.51 5.66 -92.71 -0.52 15.98 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.12 0.93 5.93 -2.38 -0.01 0.92 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.12 1.01 7.28 -2.38 -0.02 0.99 16 36 H 0.12 1.09 7.69 -2.39 -0.02 1.07 16 37 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.06 1.09 8.03 -2.39 -0.02 1.07 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.96 8.04 -2.39 -0.02 0.94 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.07 0.88 7.73 -2.38 -0.02 0.86 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 2.45 7.01 -2.39 -0.02 2.44 16 46 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -78.74 358.67 1.83 -76.91 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.37 Total: 22.32 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 5.02 Total: 0.96 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -3.72 Total: -117.86 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.74 Total: -30.25 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Total: -78.74 1.83 -76.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998854351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.257 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds