Wall clock time and date at job start Tue Mar 31 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47060 * 125.40925 * 2 1 4 4 C 1.54105 * 103.86012 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.55156 * 118.74092 * 4 3 2 6 6 C 1.50704 * 110.54416 * 241.40476 * 4 3 2 7 7 O 1.21282 * 120.00258 * 100.00195 * 6 4 3 8 8 N 1.34773 * 120.00129 * 279.99657 * 6 4 3 9 9 C 1.46498 * 120.00199 * 180.02562 * 8 6 4 10 10 H 1.08995 * 109.52678 * 325.08185 * 9 8 6 11 11 C 1.53043 * 109.49773 * 205.00226 * 9 8 6 12 12 C 1.53045 * 109.53796 * 178.68436 * 11 9 8 13 13 C 1.53186 * 109.31217 * 61.36209 * 12 11 9 14 14 N 1.46918 * 108.78140 * 305.36892 * 13 12 11 15 15 C 1.36938 * 120.63090 * 233.63339 * 14 13 12 16 16 H 1.08000 * 120.00086 * 152.78942 * 15 14 13 17 17 C 1.38811 * 120.00065 * 332.77684 * 15 14 13 18 18 N 1.31622 * 119.99933 * 159.75583 * 17 15 14 19 19 Si 1.86800 * 120.00085 * 339.76486 * 17 15 14 20 20 H 1.48497 * 109.47303 * 94.89237 * 19 17 15 21 21 H 1.48496 * 109.47099 * 214.89528 * 19 17 15 22 22 H 1.48507 * 109.46933 * 334.89703 * 19 17 15 23 23 C 1.46934 * 118.73957 * 53.60364 * 14 13 12 24 24 N 1.47049 * 103.86664 * 359.97438 * 4 3 2 25 25 C 1.33951 * 125.41139 * 180.02562 * 2 1 3 26 26 O 1.21585 * 123.04050 * 359.96949 * 25 2 1 27 27 H 1.08992 * 109.47102 * 89.99964 * 1 2 3 28 28 H 1.09001 * 109.46663 * 210.00306 * 1 2 3 29 29 H 1.09006 * 109.47085 * 329.99516 * 1 2 3 30 30 H 1.08991 * 110.54780 * 61.41036 * 3 2 1 31 31 H 1.09003 * 110.66987 * 298.65314 * 3 2 1 32 32 H 0.97005 * 119.99943 * 0.02562 * 8 6 4 33 33 H 1.08996 * 109.45940 * 58.66435 * 11 9 8 34 34 H 1.09003 * 109.46343 * 298.70437 * 11 9 8 35 35 H 1.09004 * 109.49447 * 301.41184 * 12 11 9 36 36 H 1.09003 * 109.49908 * 181.32296 * 12 11 9 37 37 H 1.09004 * 109.58266 * 65.15464 * 13 12 11 38 38 H 1.08999 * 109.59089 * 185.57455 * 13 12 11 39 39 H 0.96992 * 119.99645 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.58601 * 186.60421 * 23 14 13 41 41 H 1.09002 * 109.69912 * 66.25404 * 23 14 13 42 42 H 0.96999 * 125.41352 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2862 0.9487 -0.8957 6 6 4.4908 1.0662 1.2382 7 8 4.6030 0.3047 2.1755 8 7 5.0285 2.3003 1.3047 9 6 5.7487 2.7216 2.5088 10 1 5.2776 2.2818 3.3878 11 6 5.7111 4.2476 2.6188 12 6 6.4350 4.6869 3.8936 13 6 7.8995 4.2432 3.8231 14 7 7.9438 2.7963 3.5721 15 6 8.6591 1.9671 4.3943 16 1 8.3677 0.9330 4.5043 17 6 9.7588 2.4556 5.0863 18 7 10.2023 1.8202 6.1502 19 14 10.6092 4.0149 4.5076 20 1 10.0665 5.1800 5.2515 21 1 12.0688 3.9045 4.7571 22 1 10.3680 4.1999 3.0539 23 6 7.2055 2.2557 2.4225 24 7 3.5538 -0.8247 -0.0003 25 6 2.2411 -1.0917 -0.0005 26 8 1.7946 -2.2226 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 2.1407 1.7933 0.8961 31 1 2.1414 1.7955 -0.8950 32 1 4.9385 2.9095 0.5552 33 1 4.6748 4.5836 2.6556 34 1 6.2043 4.6866 1.7515 35 1 5.9573 4.2285 4.7596 36 1 6.3875 5.7722 3.9834 37 1 8.4023 4.7702 3.0121 38 1 8.3947 4.4654 4.7683 39 1 10.9705 2.1619 6.6339 40 1 7.2427 1.1666 2.4437 41 1 7.6510 2.6185 1.4962 42 1 4.2621 -1.4875 -0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008174281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:52 Heat of formation + Delta-G solvation = -48.497884 kcal Electronic energy + Delta-G solvation = -24554.546708 eV Core-core repulsion = 20955.698510 eV Total energy + Delta-G solvation = -3598.848198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41343 -40.69752 -39.15185 -37.39588 -36.03301 -35.08043 -34.30911 -32.68676 -31.46323 -29.82806 -28.09760 -27.20808 -25.23924 -23.77865 -23.72435 -21.64052 -21.55586 -21.18909 -18.88756 -18.80569 -18.58270 -17.55552 -17.27969 -17.02895 -16.45563 -16.25212 -15.71339 -15.46395 -15.34802 -15.17120 -14.92999 -14.86960 -14.52591 -14.45075 -14.08412 -13.71986 -13.49251 -13.29506 -13.26355 -12.93898 -12.78997 -12.57202 -12.41157 -11.82708 -11.65505 -11.54611 -11.47984 -11.34915 -11.28115 -10.82010 -10.40017 -10.18397 -9.57437 -8.92852 -8.18660 -5.52879 1.29979 1.35963 1.42023 1.52340 1.63305 1.83348 2.17002 2.40661 2.91600 3.04710 3.29157 3.33441 3.62372 3.87134 3.93779 4.07480 4.11914 4.14715 4.34815 4.45552 4.50731 4.57707 4.68029 4.73048 4.74437 4.87142 4.94814 4.96305 5.04102 5.07310 5.13008 5.24892 5.39132 5.56977 5.62389 5.83068 5.98981 6.09138 6.34407 6.59193 6.89605 7.27567 7.42482 7.59777 7.96173 9.01933 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.003447 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.588049 B = 8120.015015 C = 8665.679361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.638 5.638 3 C 0.107 3.893 4 C 0.111 3.889 5 H 0.168 0.832 6 C 0.495 3.505 7 O -0.581 6.581 8 N -0.693 5.693 9 C 0.138 3.862 10 H 0.048 0.952 11 C -0.103 4.103 12 C -0.129 4.129 13 C 0.112 3.888 14 N -0.618 5.618 15 C -0.257 4.257 16 H 0.032 0.968 17 C -0.041 4.041 18 N -0.963 5.963 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.313 1.313 22 H -0.250 1.250 23 C 0.144 3.856 24 N -0.720 5.720 25 C 0.689 3.311 26 O -0.638 6.638 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.425 0.575 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.025 0.975 41 H 0.049 0.951 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 11.350 -19.684 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.377 5.377 3 C -0.015 4.015 4 C 0.001 3.999 5 H 0.185 0.815 6 C 0.280 3.720 7 O -0.459 6.459 8 N -0.347 5.347 9 C 0.031 3.969 10 H 0.066 0.934 11 C -0.141 4.141 12 C -0.168 4.168 13 C -0.012 4.012 14 N -0.343 5.343 15 C -0.386 4.386 16 H 0.050 0.950 17 C -0.235 4.235 18 N -0.609 5.609 19 Si 0.790 3.210 20 H -0.195 1.195 21 H -0.242 1.242 22 H -0.173 1.173 23 C 0.017 3.983 24 N -0.379 5.379 25 C 0.389 3.611 26 O -0.520 6.520 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.165 0.835 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -18.588 10.274 -18.926 28.448 hybrid contribution 1.408 -0.439 0.597 1.591 sum -17.180 9.835 -18.329 26.979 Atomic orbital electron populations 1.21608 0.74026 1.03718 1.03153 1.47222 1.07386 1.05580 1.77463 1.22660 0.84013 0.88004 1.06856 1.22203 0.98557 0.81590 0.97513 0.81479 1.21495 0.79089 0.82058 0.89360 1.90818 1.60474 1.54121 1.40467 1.45734 1.54441 1.15022 1.19479 1.21248 0.91581 0.96723 0.87378 0.93378 1.21643 1.02314 0.91447 0.98710 1.21943 0.94950 1.01764 0.98174 1.21567 0.97382 0.83356 0.98873 1.44354 1.56901 1.03326 1.29767 1.18767 1.06724 0.93795 1.19358 0.95038 1.26052 0.97976 1.02458 0.97011 1.70010 1.27695 1.44340 1.18824 0.85674 0.75950 0.79302 0.80068 1.19524 1.24240 1.17342 1.21309 0.91280 0.96335 0.89343 1.44957 1.06351 1.07895 1.78717 1.16211 0.82541 0.84838 0.77462 1.90906 1.76906 1.23358 1.60862 0.90718 0.92793 0.87762 0.88963 0.83451 0.73611 0.88574 0.88804 0.93729 0.88319 0.93399 0.93668 0.92852 0.95609 0.93281 0.72682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.44 11.03 127.77 1.41 2.85 16 2 N -0.64 -11.26 3.36 -863.43 -2.90 -14.16 16 3 C 0.11 0.94 7.32 86.65 0.63 1.58 16 4 C 0.11 1.50 4.17 44.52 0.19 1.69 16 5 H 0.17 0.64 8.14 -2.39 -0.02 0.62 16 6 C 0.50 11.36 6.92 87.66 0.61 11.96 16 7 O -0.58 -21.86 16.22 -3.03 -0.05 -21.91 16 8 N -0.69 -12.35 5.08 -442.17 -2.25 -14.60 16 9 C 0.14 3.90 2.60 45.07 0.12 4.01 16 10 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 11 C -0.10 -2.12 5.35 30.62 0.16 -1.96 16 12 C -0.13 -3.65 6.08 30.67 0.19 -3.46 16 13 C 0.11 4.37 4.19 86.36 0.36 4.74 16 14 N -0.62 -29.07 2.77 -699.11 -1.94 -31.01 16 15 C -0.26 -15.31 10.04 84.03 0.84 -14.47 16 16 H 0.03 2.16 8.05 -2.91 -0.02 2.13 16 17 C -0.04 -2.44 5.24 84.86 0.44 -2.00 16 18 N -0.96 -62.65 13.97 21.65 0.30 -62.34 16 19 Si 0.96 46.08 24.35 68.60 1.67 47.75 16 20 H -0.27 -11.91 6.70 99.48 0.67 -11.24 16 21 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 22 H -0.25 -10.97 6.46 99.48 0.64 -10.33 16 23 C 0.14 5.48 6.09 86.36 0.53 6.01 16 24 N -0.72 -16.21 5.60 -460.33 -2.58 -18.78 16 25 C 0.69 18.72 8.60 179.57 1.55 20.27 16 26 O -0.64 -23.63 17.53 -3.98 -0.07 -23.69 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.94 7.91 -2.39 -0.02 0.92 16 29 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.09 0.77 7.72 -2.39 -0.02 0.75 16 31 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.42 2.93 8.60 -92.70 -0.80 2.13 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 1.69 6.98 -2.39 -0.02 1.67 16 38 H 0.05 2.01 4.49 -2.39 -0.01 2.00 16 39 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.03 1.16 7.93 -2.39 -0.02 1.14 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.43 10.05 8.96 -92.71 -0.83 9.22 16 Total: -1.00 -95.59 336.63 -1.47 -97.06 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -0.68 Total: 10.47 kcal Atomic # 6 Polarization: 24.19 SS G_CDS: 7.02 Total: 31.22 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -9.36 Total: -140.89 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.12 Total: -45.60 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.67 Total: 47.75 kcal Total: -95.59 -1.47 -97.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008174281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.560 kcal (2) G-P(sol) polarization free energy of solvation -95.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds