Wall clock time and date at job start Tue Mar 31 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.47058 * 125.40801 * 2 1 4 4 C 1.54104 * 103.85982 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.54554 * 118.59776 * 4 3 2 6 6 C 1.50696 * 110.67344 * 241.34707 * 4 3 2 7 7 O 1.21278 * 120.00120 * 95.96971 * 6 4 3 8 8 N 1.34785 * 120.00358 * 275.97384 * 6 4 3 9 9 C 1.46498 * 120.00218 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.46976 * 179.97438 * 9 8 6 11 11 H 1.09005 * 110.64163 * 54.29882 * 10 9 8 12 12 C 1.55154 * 110.71915 * 177.43672 * 10 9 8 13 13 C 1.55132 * 101.48353 * 153.73378 * 12 10 9 14 14 N 1.47419 * 104.94221 * 323.22215 * 13 12 10 15 15 C 1.36941 * 125.64729 * 204.03762 * 14 13 12 16 16 H 1.08004 * 119.99888 * 179.97438 * 15 14 13 17 17 C 1.38807 * 119.99878 * 359.96288 * 15 14 13 18 18 N 1.31619 * 119.99994 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99882 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47319 * 89.99685 * 19 17 15 21 21 H 1.48501 * 109.47190 * 209.99825 * 19 17 15 22 22 H 1.48504 * 109.47165 * 330.00212 * 19 17 15 23 23 C 1.47025 * 108.70392 * 24.00759 * 14 13 12 24 24 N 1.47054 * 103.86470 * 0.02562 * 4 3 2 25 25 C 1.33945 * 109.17868 * 0.26673 * 24 4 3 26 26 O 1.21582 * 123.04490 * 179.74026 * 25 24 4 27 27 H 1.09000 * 109.46852 * 89.99833 * 1 2 3 28 28 H 1.08996 * 109.46933 * 209.99605 * 1 2 3 29 29 H 1.08996 * 109.46895 * 329.99690 * 1 2 3 30 30 H 1.09004 * 110.54679 * 61.40598 * 3 2 1 31 31 H 1.08994 * 110.67139 * 298.65382 * 3 2 1 32 32 H 0.97002 * 119.99424 * 359.97438 * 8 6 4 33 33 H 1.08997 * 109.46703 * 299.99250 * 9 8 6 34 34 H 1.08997 * 109.46959 * 59.99454 * 9 8 6 35 35 H 1.08994 * 111.00771 * 271.93697 * 12 10 9 36 36 H 1.09003 * 111.00599 * 35.79552 * 12 10 9 37 37 H 1.09000 * 110.41417 * 204.29330 * 13 12 10 38 38 H 1.08995 * 110.29726 * 82.09138 * 13 12 10 39 39 H 0.97003 * 119.99742 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.87662 * 239.52181 * 23 14 13 41 41 H 1.08999 * 110.01336 * 118.43269 * 23 14 13 42 42 H 0.97001 * 125.40780 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2860 0.9463 -0.8953 6 6 4.4931 1.0663 1.2381 7 8 4.5434 0.3336 2.2032 8 7 5.1015 2.2686 1.2724 9 6 5.8240 2.6900 2.4751 10 6 6.4171 4.0825 2.2521 11 1 5.6428 4.7850 1.9435 12 6 7.1352 4.5848 3.5325 13 6 8.1787 5.5659 2.9366 14 7 8.6138 4.9383 1.6757 15 6 9.8074 5.1624 1.0429 16 1 10.0334 4.6506 0.1191 17 6 10.7268 6.0476 1.5888 18 7 10.4511 6.6718 2.7143 19 14 12.3553 6.3529 0.7261 20 1 12.2068 7.4825 -0.2264 21 1 13.3939 6.6878 1.7332 22 1 12.7598 5.1309 -0.0146 23 6 7.5544 4.0312 1.2103 24 7 3.5538 -0.8247 0.0003 25 6 2.2413 -1.0917 -0.0063 26 8 1.7947 -2.2225 -0.0127 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 2.1406 1.7934 0.8962 31 1 2.1415 1.7955 -0.8949 32 1 5.0615 2.8545 0.5003 33 1 5.1365 2.7186 3.3205 34 1 6.6267 1.9826 2.6833 35 1 6.4398 5.1032 4.1926 36 1 7.6264 3.7627 4.0530 37 1 9.0241 5.6800 3.6151 38 1 7.7181 6.5339 2.7394 39 1 11.0938 7.2901 3.0959 40 1 7.9427 3.0155 1.1352 41 1 7.1829 4.3586 0.2393 42 1 4.2622 -1.4874 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028739954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:37 Heat of formation + Delta-G solvation = -17.369482 kcal Electronic energy + Delta-G solvation = -23823.504414 eV Core-core repulsion = 20226.006044 eV Total energy + Delta-G solvation = -3597.498369 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61649 -39.52193 -37.74523 -36.45064 -34.85875 -34.37212 -32.63261 -30.39347 -29.50809 -28.31700 -27.43418 -25.65635 -24.34715 -23.19303 -20.97051 -20.85860 -20.08789 -19.76220 -18.05645 -17.84935 -16.88981 -16.74571 -16.05466 -15.81680 -15.44978 -14.90234 -14.69360 -14.39254 -14.33857 -14.03306 -13.76712 -13.66877 -13.17031 -12.79581 -12.68278 -12.58522 -12.32654 -11.85821 -11.78528 -11.57931 -11.01391 -10.85689 -10.62471 -10.51154 -10.34835 -10.16418 -10.07604 -9.88829 -9.63052 -9.47441 -9.15613 -8.93342 -8.70738 -6.90066 -5.71419 -3.13412 2.09425 2.42062 2.68116 3.04755 3.35780 3.41006 3.43030 3.58940 3.89509 4.30662 4.40492 4.43681 4.66041 4.89606 4.96856 5.04610 5.15515 5.19686 5.31046 5.35256 5.45952 5.54285 5.61028 5.78820 5.95786 6.00607 6.24807 6.27564 6.29875 6.46014 6.50864 6.62195 6.78615 6.81511 7.12234 7.31774 7.44622 7.56529 7.79732 7.98168 8.30498 8.30640 9.16071 9.77088 10.41226 11.32565 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.002661 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.134093 B =10520.160871 C =10833.671659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.638 5.638 3 C 0.107 3.893 4 C 0.103 3.897 5 H 0.118 0.882 6 C 0.499 3.501 7 O -0.525 6.525 8 N -0.718 5.718 9 C 0.132 3.868 10 C -0.114 4.114 11 H 0.077 0.923 12 C -0.136 4.136 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.142 3.858 24 N -0.715 5.715 25 C 0.705 3.295 26 O -0.583 6.583 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.403 0.597 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.012 0.988 39 H 0.253 0.747 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.625 -6.789 -5.505 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.378 5.378 3 C -0.017 4.017 4 C -0.007 4.007 5 H 0.135 0.865 6 C 0.282 3.718 7 O -0.400 6.400 8 N -0.370 5.370 9 C 0.009 3.991 10 C -0.134 4.134 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.015 3.985 24 N -0.376 5.376 25 C 0.405 3.595 26 O -0.461 6.461 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.238 0.762 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -17.802 -7.777 -4.764 20.002 hybrid contribution 1.243 0.489 -0.840 1.578 sum -16.558 -7.288 -5.604 18.939 Atomic orbital electron populations 1.21400 0.75294 1.03376 1.01911 1.47004 1.06461 1.05567 1.78724 1.22273 0.86219 0.89088 1.04154 1.21863 0.97213 0.83442 0.98227 0.86482 1.20672 0.79865 0.82064 0.89242 1.90762 1.60032 1.52959 1.36214 1.46087 1.53762 1.18205 1.18934 1.21516 0.95526 0.95885 0.86220 1.22453 0.97727 0.94242 0.98963 0.90477 1.23047 0.98771 1.00538 0.95151 1.21969 0.95614 0.91013 0.88714 1.44494 1.15100 1.48753 1.24703 1.19065 0.91355 1.20642 1.04214 0.90520 1.24795 0.98921 0.99210 0.97712 1.69792 1.35355 1.31906 1.20000 0.86072 0.83126 0.77966 0.78317 1.21606 1.21603 1.20684 1.21325 0.88614 0.94219 0.94301 1.44826 1.06988 1.06176 1.79618 1.15792 0.81665 0.84624 0.77372 1.90963 1.75832 1.20916 1.58370 0.92509 0.90363 0.90789 0.89509 0.88608 0.76223 0.91491 0.91055 0.92046 0.91836 0.87537 0.96981 0.93667 0.95865 0.96395 0.72292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.82 11.02 59.85 0.66 1.48 16 2 N -0.64 -5.98 3.36 -186.73 -0.63 -6.61 16 3 C 0.11 0.69 7.32 -3.16 -0.02 0.66 16 4 C 0.10 0.81 4.16 -68.21 -0.28 0.53 16 5 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 6 C 0.50 5.51 6.94 -10.98 -0.08 5.43 16 7 O -0.52 -8.26 16.60 5.56 0.09 -8.17 16 8 N -0.72 -7.19 5.43 -60.30 -0.33 -7.52 16 9 C 0.13 1.69 5.00 -4.05 -0.02 1.67 16 10 C -0.11 -1.70 2.98 -88.79 -0.26 -1.96 16 11 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 12 C -0.14 -2.35 6.55 -24.46 -0.16 -2.51 16 13 C 0.15 3.50 5.89 -2.41 -0.01 3.48 16 14 N -0.60 -14.75 3.40 -169.94 -0.58 -15.33 16 15 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 16 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.26 10.09 55.49 0.56 -25.70 16 19 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.14 2.64 6.64 -3.06 -0.02 2.62 16 24 N -0.71 -7.54 5.63 -59.33 -0.33 -7.88 16 25 C 0.71 9.03 8.60 -88.40 -0.76 8.27 16 26 O -0.58 -9.77 17.54 5.29 0.09 -9.68 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.54 7.73 -51.93 -0.40 0.13 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.40 3.01 8.40 -40.82 -0.34 2.66 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.11 2.81 5.87 -51.93 -0.31 2.51 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.02 0.45 7.73 -51.93 -0.40 0.04 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.43 4.32 8.96 -40.82 -0.37 3.95 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -36.23 345.88 -8.56 -44.79 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.41 Total: 1.28 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: -1.21 Total: 13.07 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -1.31 Total: -63.03 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.19 Total: -17.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.23 -8.56 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028739954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.417 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds