Wall clock time and date at job start Tue Mar 31 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.57705 * 2 1 4 4 C 1.53182 * 109.51572 * 239.83334 * 2 1 3 5 5 C 1.53177 * 109.04579 * 297.06455 * 4 2 1 6 6 C 1.53095 * 109.16397 * 303.02929 * 5 4 2 7 7 H 1.08998 * 109.48597 * 297.61489 * 6 5 4 8 8 C 1.52998 * 109.47957 * 177.59136 * 6 5 4 9 9 C 1.50704 * 109.47254 * 175.05648 * 8 6 5 10 10 O 1.21284 * 119.99643 * 359.97438 * 9 8 6 11 11 N 1.34772 * 120.00119 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99880 * 179.97438 * 11 9 8 13 13 C 1.53942 * 113.74573 * 251.67453 * 12 11 9 14 14 N 1.47583 * 86.12108 * 222.04861 * 13 12 11 15 15 C 1.36929 * 134.49447 * 204.64154 * 14 13 12 16 16 H 1.07997 * 120.00104 * 173.48733 * 15 14 13 17 17 C 1.38813 * 120.00112 * 353.47590 * 15 14 13 18 18 N 1.31618 * 119.99709 * 5.07456 * 17 15 14 19 19 Si 1.86797 * 120.00112 * 185.06386 * 17 15 14 20 20 H 1.48502 * 109.46997 * 94.99370 * 19 17 15 21 21 H 1.48498 * 109.47503 * 214.99003 * 19 17 15 22 22 H 1.48498 * 109.47507 * 334.99555 * 19 17 15 23 23 C 1.47581 * 91.01034 * 24.64216 * 14 13 12 24 24 O 1.42899 * 109.41941 * 57.60541 * 6 5 4 25 25 C 1.42906 * 114.09887 * 298.84465 * 24 6 5 26 26 H 1.08997 * 109.47408 * 299.84502 * 1 2 3 27 27 H 1.09002 * 109.46614 * 59.84877 * 1 2 3 28 28 H 1.08997 * 109.47150 * 179.84480 * 1 2 3 29 29 H 1.09001 * 109.47283 * 180.15423 * 3 2 1 30 30 H 1.09002 * 109.46828 * 300.15403 * 3 2 1 31 31 H 1.08996 * 109.46853 * 60.14971 * 3 2 1 32 32 H 1.08997 * 109.53463 * 177.20145 * 4 2 1 33 33 H 1.08994 * 109.61304 * 56.98369 * 4 2 1 34 34 H 1.08993 * 109.52776 * 183.11953 * 5 4 2 35 35 H 1.09004 * 109.51902 * 62.92915 * 5 4 2 36 36 H 1.09006 * 109.47437 * 295.05253 * 8 6 5 37 37 H 1.08996 * 109.47257 * 55.05437 * 8 6 5 38 38 H 0.97003 * 119.99950 * 359.97438 * 11 9 8 39 39 H 1.08998 * 112.94491 * 23.41273 * 12 11 9 40 40 H 1.08999 * 113.76925 * 336.35369 * 13 12 11 41 41 H 1.09000 * 113.77154 * 107.74308 * 13 12 11 42 42 H 0.97000 * 119.99895 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.76917 * 221.05729 * 23 14 13 44 44 H 1.09002 * 113.77456 * 89.66239 * 23 14 13 45 45 H 1.08997 * 109.47940 * 181.13739 * 25 24 6 46 46 H 1.09001 * 109.47598 * 301.16575 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4416 0.0000 4 6 2.0417 -0.7255 -1.2483 5 6 1.5878 -2.1876 -1.1980 6 6 2.0972 -2.8278 0.0961 7 1 3.1872 -2.8197 0.1011 8 6 1.5973 -4.2712 0.1824 9 6 2.1969 -4.9389 1.3931 10 8 2.9503 -4.3212 2.1154 11 7 1.8959 -6.2224 1.6731 12 6 2.4793 -6.8717 2.8498 13 6 3.5492 -7.9250 2.5099 14 7 2.9236 -8.7531 3.5592 15 6 3.3589 -9.7706 4.3655 16 1 2.7176 -10.1536 5.1455 17 6 4.6244 -10.3101 4.1801 18 7 5.4433 -9.7789 3.2972 19 14 5.1651 -11.7898 5.1839 20 1 4.9096 -13.0321 4.4114 21 1 6.6158 -11.6822 5.4824 22 1 4.3998 -11.8317 6.4558 23 6 1.6404 -8.0438 3.3906 24 8 1.6100 -2.0868 1.2166 25 6 2.0416 -0.7248 1.2477 26 1 -0.3634 0.5114 0.8913 27 1 -0.3632 0.5162 -0.8887 28 1 -0.3633 -1.0276 -0.0028 29 1 3.1327 1.4396 -0.0028 30 1 1.6780 1.9568 -0.8886 31 1 1.6825 1.9552 0.8913 32 1 3.1305 -0.6826 -1.2741 33 1 1.6367 -0.2484 -2.1406 34 1 1.9942 -2.7250 -2.0547 35 1 0.4989 -2.2319 -1.2221 36 1 0.5105 -4.2750 0.2664 37 1 1.8941 -4.8129 -0.7156 38 1 1.2930 -6.7163 1.0956 39 1 2.7879 -6.1620 3.6174 40 1 3.4534 -8.3408 1.5069 41 1 4.5658 -7.6107 2.7460 42 1 6.3278 -10.1557 3.1680 43 1 1.1330 -7.8243 4.3300 44 1 0.9838 -8.4944 2.6462 45 1 1.6452 -0.2383 2.1389 46 1 3.1308 -0.6891 1.2679 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030696568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:14 Heat of formation + Delta-G solvation = -46.147588 kcal Electronic energy + Delta-G solvation = -24367.752924 eV Core-core repulsion = 20872.546985 eV Total energy + Delta-G solvation = -3495.205938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28550 -39.19724 -37.46286 -35.41799 -33.42811 -33.21109 -31.78640 -29.80418 -27.55920 -27.40115 -26.10024 -24.78777 -24.59075 -22.92772 -21.72505 -20.01177 -19.48612 -19.05852 -16.75752 -16.65580 -16.48644 -15.97523 -15.56045 -15.20832 -14.92988 -14.63124 -14.39180 -14.29089 -13.83057 -13.53700 -13.07530 -12.80126 -12.73714 -12.44836 -12.19941 -12.10177 -11.99834 -11.90283 -11.66308 -11.42352 -11.35901 -11.18223 -11.03978 -10.86464 -10.75291 -10.65160 -10.40887 -10.31641 -10.01923 -9.52094 -9.41321 -9.27053 -8.78910 -8.33067 -6.89054 -5.77727 -3.10539 3.06821 3.39796 3.44031 3.47426 3.58245 3.75233 4.38214 4.46563 4.50236 4.53470 4.69511 4.85849 5.02211 5.08546 5.17294 5.22309 5.31127 5.36832 5.39013 5.43073 5.48316 5.53006 5.57431 5.60760 5.62724 5.66982 5.69224 5.73378 5.78833 5.92591 5.97774 6.05694 6.08382 6.20485 6.26394 6.46629 6.61399 6.85410 7.25913 7.27169 7.41241 7.58440 7.96978 8.00278 8.70167 9.03961 9.69906 10.58315 11.39638 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.042444 B = 0.002543 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.533941 B =11008.326593 C =11083.801925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.110 4.110 5 C -0.153 4.153 6 C 0.107 3.893 7 H 0.066 0.934 8 C -0.136 4.136 9 C 0.511 3.489 10 O -0.533 6.533 11 N -0.720 5.720 12 C 0.092 3.908 13 C 0.157 3.843 14 N -0.607 5.607 15 C -0.225 4.225 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.111 3.889 24 O -0.361 6.361 25 C 0.075 3.925 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.395 0.605 39 H 0.110 0.890 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.254 0.746 43 H 0.048 0.952 44 H 0.035 0.965 45 H 0.090 0.910 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 19.661 -11.959 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C -0.197 4.197 4 C -0.147 4.147 5 C -0.190 4.190 6 C 0.049 3.951 7 H 0.083 0.917 8 C -0.176 4.176 9 C 0.297 3.703 10 O -0.409 6.409 11 N -0.371 5.371 12 C -0.013 4.013 13 C 0.030 3.970 14 N -0.334 5.334 15 C -0.353 4.353 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.016 4.016 24 O -0.280 6.280 25 C -0.002 4.002 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.228 0.772 39 H 0.128 0.872 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.108 0.892 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.869 19.783 -11.141 24.757 hybrid contribution 0.180 -1.085 -0.158 1.111 sum -9.689 18.698 -11.300 23.899 Atomic orbital electron populations 1.21806 0.93888 1.02424 1.01211 1.21244 0.96842 0.95773 0.96528 1.21791 1.01020 0.94996 1.01922 1.21638 1.00780 0.95005 0.97322 1.22289 1.02226 0.96294 0.98225 1.21743 0.98212 0.89622 0.85553 0.91650 1.21749 1.02864 0.94868 0.98141 1.20416 0.81551 0.81796 0.86566 1.90705 1.35966 1.63823 1.50401 1.46140 1.49358 1.12366 1.29220 1.23850 0.96583 0.93298 0.87531 1.22607 0.96868 0.86110 0.91382 1.45665 1.06014 1.40579 1.41156 1.18991 0.98843 1.08473 1.08975 0.90031 1.24857 0.96773 0.99534 0.99182 1.69853 1.07741 1.41646 1.37101 0.86093 0.77813 0.82562 0.79272 1.21600 1.21647 1.20475 1.22890 0.90879 0.90121 0.97699 1.87984 1.73311 1.21599 1.45062 1.22560 0.98489 0.82341 0.96857 0.92791 0.93084 0.91738 0.92552 0.92490 0.92444 0.91780 0.91585 0.90852 0.90740 0.88409 0.87777 0.77175 0.87237 0.95317 0.91047 0.93556 0.93372 0.94771 0.89216 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.08 37.16 0.30 -0.78 16 2 C -0.10 -0.86 0.78 -154.36 -0.12 -0.98 16 3 C -0.14 -0.96 8.49 37.16 0.32 -0.65 16 4 C -0.11 -0.87 4.81 -26.55 -0.13 -1.00 16 5 C -0.15 -1.27 5.05 -26.59 -0.13 -1.41 16 6 C 0.11 1.23 2.19 -26.68 -0.06 1.17 16 7 H 0.07 0.86 7.96 -51.93 -0.41 0.44 16 8 C -0.14 -1.49 5.41 -27.88 -0.15 -1.64 16 9 C 0.51 8.15 7.71 -10.99 -0.08 8.06 16 10 O -0.53 -10.87 15.02 -8.85 -0.13 -11.00 16 11 N -0.72 -11.29 5.36 -55.33 -0.30 -11.58 16 12 C 0.09 1.85 4.43 -70.13 -0.31 1.54 16 13 C 0.16 3.83 7.23 -2.98 -0.02 3.81 16 14 N -0.61 -15.93 3.70 -178.07 -0.66 -16.59 16 15 C -0.23 -6.44 10.70 -15.06 -0.16 -6.60 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -27.80 11.51 55.49 0.64 -27.16 16 19 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.11 2.28 8.69 -2.97 -0.03 2.25 16 24 O -0.36 -4.83 9.06 -49.63 -0.45 -5.28 16 25 C 0.07 0.80 5.54 37.21 0.21 1.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.57 6.13 -51.93 -0.32 0.25 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.59 6.62 -51.93 -0.34 0.25 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.39 4.92 8.73 -40.82 -0.36 4.56 16 39 H 0.11 2.42 7.46 -51.93 -0.39 2.03 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.98 7.35 -51.93 -0.38 1.60 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.65 8.12 -51.93 -0.42 0.22 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -34.27 362.64 -9.02 -43.28 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.09 Total: 0.98 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.47 Total: 4.51 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.32 Total: -55.33 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.58 Total: -16.28 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.27 -9.02 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030696568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.867 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds