Wall clock time and date at job start Tue Mar 31 2020 03:13:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34773 * 119.99986 * 2 1
4 4 O 1.21289 * 120.00121 * 180.02562 * 3 2 1
5 5 C 1.50704 * 120.00412 * 0.02562 * 3 2 1
6 6 H 1.09004 * 110.48759 * 317.29853 * 5 3 2
7 7 C 1.54101 * 110.54711 * 79.99673 * 5 3 2
8 8 N 1.47050 * 103.86300 * 118.60033 * 7 5 3
9 9 C 1.46496 * 125.41036 * 180.02562 * 8 7 5
10 10 C 1.33952 * 109.18034 * 359.97438 * 8 7 5
11 11 O 1.21582 * 123.04331 * 179.97438 * 10 8 7
12 12 N 1.33953 * 113.91276 * 0.02562 * 10 8 7
13 13 C 1.46500 * 119.99973 * 180.02562 * 2 1 3
14 14 H 1.08999 * 110.78073 * 178.20792 * 13 2 1
15 15 C 1.55159 * 110.72099 * 54.97325 * 13 2 1
16 16 C 1.55129 * 101.48377 * 205.97261 * 15 13 2
17 17 N 1.47421 * 104.72458 * 37.29063 * 16 15 13
18 18 C 1.36945 * 125.64870 * 155.81551 * 17 16 15
19 19 H 1.07999 * 120.00077 * 179.69717 * 18 17 16
20 20 C 1.38812 * 119.99637 * 359.69551 * 18 17 16
21 21 N 1.31617 * 120.00227 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 119.99854 * 179.97438 * 20 18 17
23 23 H 1.48505 * 109.46819 * 59.99973 * 22 20 18
24 24 H 1.48494 * 109.47285 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.47086 * 300.00269 * 22 20 18
26 26 C 1.47018 * 108.70379 * 335.55582 * 17 16 15
27 27 H 1.09002 * 109.46734 * 269.99723 * 1 2 3
28 28 H 1.09004 * 109.46871 * 29.99695 * 1 2 3
29 29 H 1.09001 * 109.47273 * 149.99589 * 1 2 3
30 30 H 1.09005 * 110.54550 * 237.19551 * 7 5 3
31 31 H 1.08993 * 110.55005 * 359.97438 * 7 5 3
32 32 H 1.08993 * 109.47534 * 89.99615 * 9 8 7
33 33 H 1.08999 * 109.46886 * 209.99591 * 9 8 7
34 34 H 1.08994 * 109.47026 * 329.99195 * 9 8 7
35 35 H 0.96998 * 125.40751 * 180.02562 * 12 10 8
36 36 H 1.09004 * 111.00410 * 324.20989 * 15 13 2
37 37 H 1.09000 * 111.00432 * 88.06249 * 15 13 2
38 38 H 1.08996 * 110.49705 * 278.45279 * 16 15 13
39 39 H 1.08997 * 110.34301 * 156.05884 * 16 15 13
40 40 H 0.97005 * 120.00046 * 179.97438 * 21 20 18
41 41 H 1.09010 * 109.88204 * 120.70275 * 26 17 16
42 42 H 1.09004 * 109.88434 * 241.70985 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3518 1.1672 -0.0005
5 6 1.3855 2.4724 0.0006
6 1 0.5446 2.4278 -0.6916
7 6 0.8985 2.8152 1.4219
8 7 1.5724 4.0857 1.7283
9 6 1.4382 4.8378 2.9783
10 6 2.3294 4.4456 0.6834
11 8 2.9978 5.4610 0.6675
12 7 2.2824 3.5859 -0.3428
13 6 2.1975 -1.2687 -0.0006
14 1 3.2730 -1.0943 -0.0324
15 6 1.7507 -2.1601 -1.1894
16 6 2.0691 -3.5787 -0.6484
17 7 1.7324 -3.5173 0.7855
18 6 1.4004 -4.5866 1.5740
19 1 1.1741 -4.4371 2.6193
20 6 1.3547 -5.8627 1.0294
21 7 1.6310 -6.0449 -0.2444
22 14 0.9025 -7.3214 2.1050
23 1 -0.4585 -7.1210 2.6642
24 1 0.9245 -8.5628 1.2904
25 1 1.8814 -7.4400 3.2154
26 6 1.8183 -2.1187 1.2304
27 1 -0.3633 0.0000 1.0277
28 1 -0.3633 0.8901 -0.5138
29 1 -0.3634 -0.8899 -0.5139
30 1 -0.1839 2.9432 1.4349
31 1 1.2013 2.0412 2.1271
32 1 2.1995 4.5073 3.6848
33 1 1.5661 5.9016 2.7777
34 1 0.4492 4.6644 3.4023
35 1 2.7639 3.6824 -1.1792
36 1 0.6849 -2.0435 -1.3861
37 1 2.3372 -1.9435 -2.0822
38 1 3.1262 -3.8091 -0.7803
39 1 1.4521 -4.3233 -1.1514
40 1 1.5994 -6.9367 -0.6249
41 1 0.8541 -1.7943 1.6221
42 1 2.5830 -2.0210 2.0010
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033336079.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:39
Heat of formation + Delta-G solvation = 2.464159 kcal
Electronic energy + Delta-G solvation = -24675.467110 eV
Core-core repulsion = 21078.828792 eV
Total energy + Delta-G solvation = -3596.638318 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.59437 -39.67453 -37.48997 -36.33902 -34.96921 -34.32072 -32.27114 -29.96350
-29.12038 -27.86159 -27.32408 -26.57870 -24.72553 -23.79782 -20.87403 -20.69914
-20.29784 -18.97445 -18.02948 -17.68330 -17.07143 -16.47752 -16.35352 -15.43996
-15.26792 -14.81349 -14.53061 -14.36652 -14.08558 -13.83860 -13.68727 -13.45136
-13.13832 -12.72080 -12.70242 -12.53968 -12.37325 -12.11137 -11.92006 -11.60953
-11.12279 -10.95189 -10.84845 -10.54988 -10.44868 -10.21045 -10.15908 -9.89991
-9.64064 -9.37977 -8.83751 -8.72620 -8.52571 -6.92548 -5.72313 -3.15262
2.20966 2.48796 2.72412 3.07511 3.35948 3.40697 3.41849 3.62129
3.98169 4.18651 4.43331 4.44281 4.67250 4.96577 5.01826 5.11383
5.25486 5.26170 5.34798 5.43220 5.44786 5.48781 5.57076 5.64126
5.65724 5.82359 6.10413 6.25849 6.37886 6.43928 6.47295 6.59360
6.82676 6.87837 7.20441 7.36696 7.43546 7.54417 7.76397 8.05861
8.27696 8.38269 9.13963 9.74621 10.38118 11.31163
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.032771 B = 0.003249 C = 0.003104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 854.200349 B = 8614.759413 C = 9019.303815
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -0.594 5.594
3 C 0.500 3.500
4 O -0.525 6.525
5 C 0.104 3.896
6 H 0.117 0.883
7 C 0.107 3.893
8 N -0.638 5.638
9 C 0.122 3.878
10 C 0.705 3.295
11 O -0.584 6.584
12 N -0.715 5.715
13 C 0.125 3.875
14 H 0.103 0.897
15 C -0.152 4.152
16 C 0.153 3.847
17 N -0.602 5.602
18 C -0.225 4.225
19 H 0.077 0.923
20 C -0.009 4.009
21 N -0.922 5.922
22 Si 0.916 3.084
23 H -0.285 1.285
24 H -0.290 1.290
25 H -0.285 1.285
26 C 0.131 3.869
27 H 0.062 0.938
28 H 0.068 0.932
29 H 0.086 0.914
30 H 0.095 0.905
31 H 0.088 0.912
32 H 0.056 0.944
33 H 0.078 0.922
34 H 0.074 0.926
35 H 0.434 0.566
36 H 0.067 0.933
37 H 0.061 0.939
38 H 0.015 0.985
39 H 0.111 0.889
40 H 0.254 0.746
41 H 0.028 0.972
42 H 0.024 0.976
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.173 17.042 0.489 18.497
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 N -0.327 5.327
3 C 0.284 3.716
4 O -0.401 6.401
5 C -0.006 4.006
6 H 0.135 0.865
7 C -0.017 4.017
8 N -0.377 5.377
9 C -0.020 4.020
10 C 0.406 3.594
11 O -0.462 6.462
12 N -0.376 5.376
13 C 0.022 3.978
14 H 0.121 0.879
15 C -0.192 4.192
16 C 0.027 3.973
17 N -0.329 5.329
18 C -0.353 4.353
19 H 0.095 0.905
20 C -0.205 4.205
21 N -0.570 5.570
22 Si 0.746 3.254
23 H -0.211 1.211
24 H -0.215 1.215
25 H -0.212 1.212
26 C 0.004 3.996
27 H 0.080 0.920
28 H 0.087 0.913
29 H 0.104 0.896
30 H 0.113 0.887
31 H 0.106 0.894
32 H 0.074 0.926
33 H 0.097 0.903
34 H 0.092 0.908
35 H 0.276 0.724
36 H 0.085 0.915
37 H 0.080 0.920
38 H 0.033 0.967
39 H 0.129 0.871
40 H 0.064 0.936
41 H 0.046 0.954
42 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -6.230 17.417 0.640 18.509
hybrid contribution -0.091 -1.017 0.226 1.046
sum -6.321 16.400 0.866 17.598
Atomic orbital electron populations
1.21937 0.79510 1.03616 1.02438 1.47884 1.07135 1.05799 1.71882
1.20648 0.88332 0.85106 0.77475 1.90747 1.13516 1.86842 1.48989
1.21898 0.93539 0.86961 0.98235 0.86517 1.22276 0.98573 0.87155
0.93714 1.47007 1.49468 1.24449 1.16810 1.21397 1.01678 0.96343
0.82580 1.15794 0.80026 0.83131 0.80494 1.90955 1.46497 1.26843
1.81924 1.44843 1.51254 1.22437 1.19090 1.22307 0.97143 0.81066
0.97314 0.87864 1.23441 1.00660 0.98745 0.96322 1.22004 0.98896
0.91806 0.84552 1.44431 1.80942 1.00705 1.06781 1.19018 1.39197
0.84991 0.92116 0.90496 1.24791 1.01845 0.97420 0.96419 1.69757
1.55237 1.21021 1.11019 0.86135 0.78267 0.81831 0.79141 1.21118
1.21529 1.21169 1.21494 0.97960 0.86334 0.93829 0.91983 0.91329
0.89555 0.88686 0.89414 0.92552 0.90332 0.90755 0.72380 0.91488
0.92022 0.96704 0.87140 0.93564 0.95423 0.95814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.62 8.95 59.85 0.54 1.16 16
2 N -0.59 -7.73 2.88 -171.83 -0.50 -8.23 16
3 C 0.50 6.64 6.80 -10.98 -0.07 6.57 16
4 O -0.53 -9.39 15.93 5.55 0.09 -9.30 16
5 C 0.10 0.97 3.31 -68.21 -0.23 0.75 16
6 H 0.12 0.70 6.51 -51.93 -0.34 0.36 16
7 C 0.11 0.86 7.08 -3.17 -0.02 0.84 16
8 N -0.64 -6.72 3.36 -186.75 -0.63 -7.35 16
9 C 0.12 0.95 11.03 59.84 0.66 1.61 16
10 C 0.71 9.69 8.60 -88.39 -0.76 8.93 16
11 O -0.58 -10.23 17.53 5.29 0.09 -10.14 16
12 N -0.72 -8.25 5.60 -59.33 -0.33 -8.59 16
13 C 0.12 2.14 3.35 -66.10 -0.22 1.91 16
14 H 0.10 1.97 7.00 -51.93 -0.36 1.61 16
15 C -0.15 -2.69 6.62 -24.46 -0.16 -2.85 16
16 C 0.15 3.54 5.91 -2.41 -0.01 3.52 16
17 N -0.60 -14.76 3.39 -169.94 -0.58 -15.34 16
18 C -0.23 -6.05 10.27 -15.06 -0.15 -6.20 16
19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16
20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16
21 N -0.92 -25.99 10.08 55.49 0.56 -25.44 16
22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16
23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16
25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
26 C 0.13 2.61 6.88 -3.07 -0.02 2.59 16
27 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16
28 H 0.07 0.38 6.02 -51.93 -0.31 0.07 16
29 H 0.09 0.91 6.08 -51.93 -0.32 0.60 16
30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.09 0.76 7.72 -51.93 -0.40 0.35 16
32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
33 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16
34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16
35 H 0.43 4.65 8.96 -40.82 -0.37 4.28 16
36 H 0.07 1.09 6.09 -51.93 -0.32 0.78 16
37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
39 H 0.11 2.87 5.86 -51.93 -0.30 2.56 16
40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16
41 H 0.03 0.52 6.94 -51.92 -0.36 0.16 16
42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
LS Contribution 335.93 15.07 5.06 5.06
Total: -1.00 -35.53 335.93 -7.79 -43.31
By element:
Atomic # 1 Polarization: 7.13 SS G_CDS: -5.98 Total: 1.15 kcal
Atomic # 6 Polarization: 19.04 SS G_CDS: -0.56 Total: 18.48 kcal
Atomic # 7 Polarization: -63.46 SS G_CDS: -1.47 Total: -64.94 kcal
Atomic # 8 Polarization: -19.62 SS G_CDS: 0.18 Total: -19.44 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -35.53 -7.79 -43.31 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033336079.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.778 kcal
(2) G-P(sol) polarization free energy of solvation -35.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds