Wall clock time and date at job start Tue Mar 31 2020 03:13:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34773 * 119.99986 * 2 1
4 4 O 1.21289 * 120.00121 * 180.02562 * 3 2 1
5 5 C 1.50704 * 120.00412 * 0.02562 * 3 2 1
6 6 H 1.09004 * 110.48759 * 317.29853 * 5 3 2
7 7 C 1.54101 * 110.54711 * 79.99673 * 5 3 2
8 8 N 1.47050 * 103.86300 * 118.60033 * 7 5 3
9 9 C 1.46496 * 125.41036 * 180.02562 * 8 7 5
10 10 C 1.33952 * 109.18034 * 359.97438 * 8 7 5
11 11 O 1.21582 * 123.04331 * 179.97438 * 10 8 7
12 12 N 1.33953 * 113.91276 * 0.02562 * 10 8 7
13 13 C 1.46500 * 119.99973 * 180.02562 * 2 1 3
14 14 H 1.08999 * 110.78073 * 178.20792 * 13 2 1
15 15 C 1.55159 * 110.72099 * 54.97325 * 13 2 1
16 16 C 1.55129 * 101.48377 * 205.97261 * 15 13 2
17 17 N 1.47421 * 104.72458 * 37.29063 * 16 15 13
18 18 C 1.36945 * 125.64870 * 155.81551 * 17 16 15
19 19 H 1.07999 * 120.00077 * 179.69717 * 18 17 16
20 20 C 1.38812 * 119.99637 * 359.69551 * 18 17 16
21 21 N 1.31617 * 120.00227 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 119.99854 * 179.97438 * 20 18 17
23 23 H 1.48505 * 109.46819 * 59.99973 * 22 20 18
24 24 H 1.48494 * 109.47285 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.47086 * 300.00269 * 22 20 18
26 26 C 1.47018 * 108.70379 * 335.55582 * 17 16 15
27 27 H 1.09002 * 109.46734 * 269.99723 * 1 2 3
28 28 H 1.09004 * 109.46871 * 29.99695 * 1 2 3
29 29 H 1.09001 * 109.47273 * 149.99589 * 1 2 3
30 30 H 1.09005 * 110.54550 * 237.19551 * 7 5 3
31 31 H 1.08993 * 110.55005 * 359.97438 * 7 5 3
32 32 H 1.08993 * 109.47534 * 89.99615 * 9 8 7
33 33 H 1.08999 * 109.46886 * 209.99591 * 9 8 7
34 34 H 1.08994 * 109.47026 * 329.99195 * 9 8 7
35 35 H 0.96998 * 125.40751 * 180.02562 * 12 10 8
36 36 H 1.09004 * 111.00410 * 324.20989 * 15 13 2
37 37 H 1.09000 * 111.00432 * 88.06249 * 15 13 2
38 38 H 1.08996 * 110.49705 * 278.45279 * 16 15 13
39 39 H 1.08997 * 110.34301 * 156.05884 * 16 15 13
40 40 H 0.97005 * 120.00046 * 179.97438 * 21 20 18
41 41 H 1.09010 * 109.88204 * 120.70275 * 26 17 16
42 42 H 1.09004 * 109.88434 * 241.70985 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3518 1.1672 -0.0005
5 6 1.3855 2.4724 0.0006
6 1 0.5446 2.4278 -0.6916
7 6 0.8985 2.8152 1.4219
8 7 1.5724 4.0857 1.7283
9 6 1.4382 4.8378 2.9783
10 6 2.3294 4.4456 0.6834
11 8 2.9978 5.4610 0.6675
12 7 2.2824 3.5859 -0.3428
13 6 2.1975 -1.2687 -0.0006
14 1 3.2730 -1.0943 -0.0324
15 6 1.7507 -2.1601 -1.1894
16 6 2.0691 -3.5787 -0.6484
17 7 1.7324 -3.5173 0.7855
18 6 1.4004 -4.5866 1.5740
19 1 1.1741 -4.4371 2.6193
20 6 1.3547 -5.8627 1.0294
21 7 1.6310 -6.0449 -0.2444
22 14 0.9025 -7.3214 2.1050
23 1 -0.4585 -7.1210 2.6642
24 1 0.9245 -8.5628 1.2904
25 1 1.8814 -7.4400 3.2154
26 6 1.8183 -2.1187 1.2304
27 1 -0.3633 0.0000 1.0277
28 1 -0.3633 0.8901 -0.5138
29 1 -0.3634 -0.8899 -0.5139
30 1 -0.1839 2.9432 1.4349
31 1 1.2013 2.0412 2.1271
32 1 2.1995 4.5073 3.6848
33 1 1.5661 5.9016 2.7777
34 1 0.4492 4.6644 3.4023
35 1 2.7639 3.6824 -1.1792
36 1 0.6849 -2.0435 -1.3861
37 1 2.3372 -1.9435 -2.0822
38 1 3.1262 -3.8091 -0.7803
39 1 1.4521 -4.3233 -1.1514
40 1 1.5994 -6.9367 -0.6249
41 1 0.8541 -1.7943 1.6221
42 1 2.5830 -2.0210 2.0010
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033336079.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:39
Heat of formation + Delta-G solvation = -25.066991 kcal
Electronic energy + Delta-G solvation = -24676.660950 eV
Core-core repulsion = 21078.828792 eV
Total energy + Delta-G solvation = -3597.832158 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.48994 -40.81650 -38.97521 -37.38882 -36.32099 -35.11490 -34.07225 -31.36192
-30.44049 -29.11290 -28.13205 -27.67170 -26.42313 -24.77929 -22.17387 -22.00421
-21.60834 -20.16026 -18.96287 -18.90234 -18.63428 -17.56964 -17.31599 -16.77306
-16.39232 -16.24309 -15.92032 -15.53733 -15.19288 -14.96183 -14.63571 -14.47034
-14.44348 -14.00047 -13.67261 -13.49933 -13.42300 -13.26126 -13.03463 -12.98737
-12.82593 -12.65949 -12.37040 -12.12344 -12.05719 -11.80859 -11.54524 -11.36885
-11.30096 -10.74239 -10.38658 -9.67035 -9.58721 -8.90781 -7.76844 -5.22687
1.31666 1.48812 1.51983 1.54849 1.58574 1.76784 2.08451 2.51290
2.86344 3.25816 3.30404 3.33571 3.72828 3.84201 3.88326 3.96065
4.06856 4.23936 4.34736 4.49066 4.52045 4.58865 4.66319 4.70582
4.76313 4.87615 4.89841 4.94908 5.00582 5.07554 5.13966 5.46570
5.52397 5.59364 5.61986 5.78639 6.00687 6.29851 6.31344 6.40349
7.03336 7.10019 7.42932 7.76589 8.39584 9.24358
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.032771 B = 0.003249 C = 0.003104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 854.200349 B = 8614.759413 C = 9019.303815
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.057 3.943
2 N -0.589 5.589
3 C 0.499 3.501
4 O -0.580 6.580
5 C 0.113 3.887
6 H 0.167 0.833
7 C 0.105 3.895
8 N -0.637 5.637
9 C 0.116 3.884
10 C 0.692 3.308
11 O -0.635 6.635
12 N -0.716 5.716
13 C 0.140 3.860
14 H 0.077 0.923
15 C -0.131 4.131
16 C 0.154 3.846
17 N -0.622 5.622
18 C -0.240 4.240
19 H 0.082 0.918
20 C -0.064 4.064
21 N -0.948 5.948
22 Si 0.980 3.020
23 H -0.272 1.272
24 H -0.295 1.295
25 H -0.283 1.283
26 C 0.132 3.868
27 H 0.079 0.921
28 H 0.116 0.884
29 H 0.074 0.926
30 H 0.148 0.852
31 H 0.084 0.916
32 H 0.051 0.949
33 H 0.067 0.933
34 H 0.113 0.887
35 H 0.434 0.566
36 H 0.089 0.911
37 H 0.074 0.926
38 H -0.020 1.020
39 H 0.083 0.917
40 H 0.248 0.752
41 H 0.050 0.950
42 H 0.008 0.992
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.231 18.161 1.134 20.875
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 N -0.320 5.320
3 C 0.286 3.714
4 O -0.459 6.459
5 C 0.003 3.997
6 H 0.184 0.816
7 C -0.018 4.018
8 N -0.376 5.376
9 C -0.025 4.025
10 C 0.392 3.608
11 O -0.517 6.517
12 N -0.376 5.376
13 C 0.035 3.965
14 H 0.096 0.904
15 C -0.170 4.170
16 C 0.029 3.971
17 N -0.348 5.348
18 C -0.369 4.369
19 H 0.100 0.900
20 C -0.256 4.256
21 N -0.598 5.598
22 Si 0.809 3.191
23 H -0.197 1.197
24 H -0.221 1.221
25 H -0.209 1.209
26 C 0.006 3.994
27 H 0.097 0.903
28 H 0.134 0.866
29 H 0.093 0.907
30 H 0.165 0.835
31 H 0.102 0.898
32 H 0.070 0.930
33 H 0.086 0.914
34 H 0.131 0.869
35 H 0.276 0.724
36 H 0.108 0.892
37 H 0.093 0.907
38 H -0.002 1.002
39 H 0.100 0.900
40 H 0.058 0.942
41 H 0.068 0.932
42 H 0.026 0.974
Dipole moment (debyes) X Y Z Total
from point charges -9.357 18.542 1.310 20.810
hybrid contribution 0.890 -1.371 0.069 1.636
sum -8.467 17.170 1.379 19.194
Atomic orbital electron populations
1.22321 0.76441 1.05426 1.04199 1.47845 1.08748 1.04032 1.71384
1.21426 0.87865 0.86260 0.75885 1.90738 1.16216 1.87625 1.51355
1.22178 0.93409 0.83507 1.00571 0.81625 1.22620 1.01140 0.85689
0.92325 1.47220 1.48665 1.25195 1.16496 1.21607 1.03784 0.95562
0.81577 1.16164 0.80148 0.82946 0.81579 1.90906 1.48664 1.29121
1.82994 1.44915 1.51458 1.22527 1.18668 1.21762 0.96388 0.82785
0.95534 0.90439 1.23219 1.02261 0.94913 0.96649 1.21780 0.96172
0.94695 0.84498 1.44701 1.80740 1.02134 1.07268 1.19403 1.38694
0.86069 0.92736 0.90001 1.25614 1.02366 0.99974 0.97674 1.70009
1.56329 1.20967 1.12474 0.85126 0.78407 0.78259 0.77355 1.19714
1.22093 1.20941 1.21588 0.98444 0.84690 0.94699 0.90258 0.86572
0.90721 0.83476 0.89815 0.93026 0.91401 0.86855 0.72382 0.89241
0.90711 1.00190 0.89958 0.94240 0.93164 0.97400
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.75 8.95 127.77 1.14 1.89 16
2 N -0.59 -13.55 2.88 -815.93 -2.35 -15.90 16
3 C 0.50 12.02 6.80 87.66 0.60 12.62 16
4 O -0.58 -20.57 15.93 -3.06 -0.05 -20.62 16
5 C 0.11 1.64 3.31 44.51 0.15 1.79 16
6 H 0.17 0.86 6.51 -2.39 -0.02 0.84 16
7 C 0.11 1.18 7.08 86.65 0.61 1.80 16
8 N -0.64 -11.71 3.36 -863.48 -2.90 -14.60 16
9 C 0.12 1.54 11.03 127.77 1.41 2.95 16
10 C 0.69 18.20 8.60 179.57 1.54 19.75 16
11 O -0.63 -22.52 17.53 -3.97 -0.07 -22.58 16
12 N -0.72 -15.16 5.60 -460.34 -2.58 -17.74 16
13 C 0.14 4.68 3.35 46.18 0.15 4.84 16
14 H 0.08 3.02 7.00 -2.39 -0.02 3.01 16
15 C -0.13 -4.51 6.62 32.06 0.21 -4.30 16
16 C 0.15 7.34 5.91 86.93 0.51 7.85 16
17 N -0.62 -30.80 3.39 -691.56 -2.35 -33.15 16
18 C -0.24 -12.99 10.27 84.03 0.86 -12.13 16
19 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16
20 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16
21 N -0.95 -54.86 10.08 21.65 0.22 -54.64 16
22 Si 0.98 44.12 29.55 68.60 2.03 46.15 16
23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16
25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
26 C 0.13 5.18 6.88 86.73 0.60 5.78 16
27 H 0.08 0.84 7.89 -2.39 -0.02 0.82 16
28 H 0.12 0.45 6.02 -2.38 -0.01 0.43 16
29 H 0.07 1.24 6.08 -2.39 -0.01 1.22 16
30 H 0.15 0.25 8.14 -2.38 -0.02 0.23 16
31 H 0.08 1.08 7.72 -2.39 -0.02 1.06 16
32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.07 1.06 7.91 -2.39 -0.02 1.04 16
34 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16
35 H 0.43 8.88 8.96 -92.71 -0.83 8.04 16
36 H 0.09 2.70 6.09 -2.39 -0.01 2.68 16
37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
38 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16
39 H 0.08 4.41 5.86 -2.39 -0.01 4.40 16
40 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16
41 H 0.05 1.76 6.94 -2.38 -0.02 1.74 16
42 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16
Total: -1.00 -83.24 335.93 0.43 -82.81
By element:
Atomic # 1 Polarization: 10.26 SS G_CDS: 0.22 Total: 10.48 kcal
Atomic # 6 Polarization: 31.54 SS G_CDS: 8.26 Total: 39.80 kcal
Atomic # 7 Polarization: -126.08 SS G_CDS: -9.96 Total: -136.04 kcal
Atomic # 8 Polarization: -43.08 SS G_CDS: -0.12 Total: -43.20 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal
Total: -83.24 0.43 -82.81 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033336079.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.740 kcal
(2) G-P(sol) polarization free energy of solvation -83.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.497 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.067 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds