Wall clock time and date at job start Tue Mar 31 2020 03:13:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.34771 * 120.00172 * 2 1
4 4 O 1.21287 * 120.00107 * 179.97438 * 3 2 1
5 5 C 1.50697 * 120.00360 * 359.97438 * 3 2 1
6 6 H 1.09006 * 110.48365 * 38.75546 * 5 3 2
7 7 C 1.54098 * 110.76147 * 276.01941 * 5 3 2
8 8 N 1.47052 * 103.86348 * 241.67552 * 7 5 3
9 9 C 1.46500 * 125.41166 * 179.86934 * 8 7 5
10 10 C 1.33952 * 109.17881 * 359.60624 * 8 7 5
11 11 O 1.21585 * 123.03943 * 180.28591 * 10 8 7
12 12 N 1.33952 * 113.91437 * 0.26111 * 10 8 7
13 13 C 1.46500 * 119.99677 * 180.02562 * 2 1 3
14 14 H 1.08999 * 110.64189 * 178.31470 * 13 2 1
15 15 C 1.55153 * 110.72347 * 54.97389 * 13 2 1
16 16 C 1.54906 * 101.58453 * 277.13872 * 15 13 2
17 17 N 1.47420 * 104.83184 * 322.99333 * 16 15 13
18 18 C 1.36937 * 125.64793 * 204.16711 * 17 16 15
19 19 H 1.08004 * 119.99976 * 342.04888 * 18 17 16
20 20 C 1.38811 * 120.00560 * 162.04836 * 18 17 16
21 21 N 1.31619 * 120.00573 * 156.86351 * 20 18 17
22 22 Si 1.86807 * 119.99606 * 336.86692 * 20 18 17
23 23 H 1.48497 * 109.47028 * 84.83743 * 22 20 18
24 24 H 1.48505 * 109.46868 * 204.83425 * 22 20 18
25 25 H 1.48497 * 109.47149 * 324.83256 * 22 20 18
26 26 C 1.47019 * 108.70454 * 24.12273 * 17 16 15
27 27 H 1.09005 * 109.47092 * 89.99583 * 1 2 3
28 28 H 1.08994 * 109.47845 * 210.00066 * 1 2 3
29 29 H 1.09000 * 109.47016 * 330.00175 * 1 2 3
30 30 H 1.09005 * 110.66127 * 123.02450 * 7 5 3
31 31 H 1.09000 * 110.43502 * 0.21667 * 7 5 3
32 32 H 1.09000 * 109.47243 * 179.71770 * 9 8 7
33 33 H 1.08998 * 109.47384 * 59.71602 * 9 8 7
34 34 H 1.09002 * 109.46920 * 299.71496 * 9 8 7
35 35 H 0.96997 * 125.40657 * 180.02562 * 12 10 8
36 36 H 1.09000 * 111.00188 * 35.21873 * 15 13 2
37 37 H 1.09006 * 111.00389 * 159.06172 * 15 13 2
38 38 H 1.09000 * 110.36920 * 204.14918 * 16 15 13
39 39 H 1.09006 * 110.45974 * 81.87468 * 16 15 13
40 40 H 0.96998 * 120.00162 * 180.02562 * 21 20 18
41 41 H 1.09007 * 109.88163 * 239.52504 * 26 17 16
42 42 H 1.08999 * 109.88439 * 118.36463 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1388 1.1671 0.0000
4 8 3.3517 1.1671 0.0005
5 6 1.3855 2.4723 -0.0006
6 1 0.5049 2.4047 0.6383
7 6 0.9821 2.8695 -1.4338
8 7 1.6774 4.1463 -1.6545
9 6 1.6197 4.9432 -2.8824
10 6 2.3673 4.4679 -0.5523
11 8 3.0324 5.4814 -0.4586
12 7 2.2578 3.5721 0.4376
13 6 2.1974 -1.2688 -0.0006
14 1 3.2725 -1.0918 -0.0305
15 6 1.7505 -2.1601 -1.1893
16 6 0.4717 -2.8220 -0.6183
17 7 0.7743 -3.0624 0.8044
18 6 0.1819 -4.0085 1.5975
19 1 -0.7556 -4.4538 1.2985
20 6 0.7861 -4.3954 2.7858
21 7 0.0632 -4.9246 3.7500
22 14 2.6255 -4.1650 3.0165
23 1 2.8958 -2.7839 3.4903
24 1 3.1244 -5.1392 4.0202
25 1 3.3186 -4.3889 1.7223
26 6 1.8181 -2.1187 1.2304
27 1 -0.3633 0.0001 -1.0277
28 1 -0.3634 -0.8899 0.5138
29 1 -0.3633 0.8900 0.5138
30 1 -0.0972 3.0040 -1.5063
31 1 1.3238 2.1195 -2.1471
32 1 2.2263 5.8407 -2.7620
33 1 0.5867 5.2272 -3.0831
34 1 2.0032 4.3546 -3.7159
35 1 2.6857 3.6385 1.3055
36 1 1.5193 -1.5551 -2.0659
37 1 2.5075 -2.9091 -1.4222
38 1 0.2723 -3.7645 -1.1282
39 1 -0.3813 -2.1505 -0.7165
40 1 0.4854 -5.1945 4.5805
41 1 2.6907 -2.6669 1.5857
42 1 1.4349 -1.4746 2.0218
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033336082.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:45
Heat of formation + Delta-G solvation = 12.984718 kcal
Electronic energy + Delta-G solvation = -25121.649731 eV
Core-core repulsion = 21525.467619 eV
Total energy + Delta-G solvation = -3596.182112 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.62286 -39.88762 -37.90179 -36.36406 -34.75929 -34.34369 -32.38487 -30.29509
-29.35823 -28.64758 -27.44655 -26.54587 -24.57283 -23.88901 -21.37111 -20.78491
-20.42519 -19.21409 -18.06191 -17.74513 -16.96730 -16.68384 -16.40731 -15.73497
-15.47529 -15.20504 -14.70736 -14.37518 -14.06495 -13.79188 -13.70931 -13.39779
-13.22635 -12.99712 -12.79446 -12.63397 -12.51200 -12.42574 -12.13895 -11.65960
-11.42725 -11.27561 -10.87371 -10.82841 -10.48406 -10.44078 -10.25320 -10.09492
-9.49943 -9.35338 -8.86253 -8.77696 -8.54016 -7.17221 -6.04170 -3.34340
2.16385 2.48403 2.67844 3.05304 3.29836 3.42831 3.45372 3.61295
3.97619 4.17655 4.45132 4.46859 4.68324 4.83277 4.95564 4.98959
5.05027 5.13498 5.19873 5.25021 5.27910 5.40636 5.47630 5.50560
5.59597 5.77962 5.80437 5.89214 6.11088 6.19253 6.35682 6.40279
6.41991 6.62404 6.70497 6.85727 7.18568 7.32800 7.59270 8.01342
8.21927 8.36736 8.73221 9.59592 10.06147 11.12043
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.028511 B = 0.003950 C = 0.003766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 981.835211 B = 7087.184154 C = 7433.826108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.060 3.940
2 N -0.590 5.590
3 C 0.501 3.499
4 O -0.528 6.528
5 C 0.103 3.897
6 H 0.119 0.881
7 C 0.110 3.890
8 N -0.637 5.637
9 C 0.119 3.881
10 C 0.706 3.294
11 O -0.585 6.585
12 N -0.715 5.715
13 C 0.125 3.875
14 H 0.105 0.895
15 C -0.143 4.143
16 C 0.124 3.876
17 N -0.608 5.608
18 C -0.247 4.247
19 H 0.095 0.905
20 C 0.025 3.975
21 N -0.904 5.904
22 Si 0.885 3.115
23 H -0.287 1.287
24 H -0.303 1.303
25 H -0.279 1.279
26 C 0.111 3.889
27 H 0.060 0.940
28 H 0.105 0.895
29 H 0.066 0.934
30 H 0.095 0.905
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.062 0.938
34 H 0.061 0.939
35 H 0.434 0.566
36 H 0.070 0.930
37 H 0.080 0.920
38 H 0.050 0.950
39 H 0.036 0.964
40 H 0.264 0.736
41 H 0.036 0.964
42 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.211 15.003 -12.868 19.889
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 N -0.323 5.323
3 C 0.286 3.714
4 O -0.403 6.403
5 C -0.008 4.008
6 H 0.136 0.864
7 C -0.014 4.014
8 N -0.377 5.377
9 C -0.022 4.022
10 C 0.406 3.594
11 O -0.463 6.463
12 N -0.376 5.376
13 C 0.022 3.978
14 H 0.123 0.877
15 C -0.182 4.182
16 C -0.001 4.001
17 N -0.336 5.336
18 C -0.373 4.373
19 H 0.112 0.888
20 C -0.174 4.174
21 N -0.548 5.548
22 Si 0.717 3.283
23 H -0.214 1.214
24 H -0.231 1.231
25 H -0.205 1.205
26 C -0.014 4.014
27 H 0.078 0.922
28 H 0.123 0.877
29 H 0.085 0.915
30 H 0.114 0.886
31 H 0.104 0.896
32 H 0.105 0.895
33 H 0.081 0.919
34 H 0.080 0.920
35 H 0.277 0.723
36 H 0.089 0.911
37 H 0.098 0.902
38 H 0.068 0.932
39 H 0.054 0.946
40 H 0.074 0.926
41 H 0.053 0.947
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -1.302 15.464 -12.758 20.090
hybrid contribution 1.146 -0.292 0.697 1.372
sum -0.156 15.172 -12.062 19.383
Atomic orbital electron populations
1.22248 0.78949 1.04917 1.02156 1.47830 1.07463 1.05294 1.71718
1.20665 0.88278 0.85146 0.77311 1.90736 1.13537 1.86918 1.49159
1.21922 0.94339 0.87008 0.97482 0.86364 1.22217 0.98664 0.86596
0.93944 1.46991 1.51911 1.23761 1.15071 1.21421 1.02228 0.95457
0.83142 1.15796 0.79808 0.83126 0.80650 1.90954 1.45887 1.27378
1.82065 1.44862 1.53781 1.21416 1.17543 1.22161 0.97103 0.82037
0.96522 0.87661 1.23129 0.99930 0.98636 0.96514 1.21894 0.94340
0.98249 0.85619 1.44833 1.44888 1.37741 1.06133 1.18623 1.02862
1.15438 1.00408 0.88779 1.24950 0.97564 0.98826 0.96045 1.69836
1.34753 1.45569 1.04616 0.86965 0.88200 0.76498 0.76670 1.21411
1.23086 1.20538 1.22003 0.93076 0.91598 0.94753 0.92189 0.87697
0.91526 0.88646 0.89598 0.89501 0.91945 0.92041 0.72327 0.91106
0.90186 0.93182 0.94599 0.92600 0.94662 0.93632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.62 8.33 59.84 0.50 1.12 16
2 N -0.59 -7.84 2.82 -171.85 -0.49 -8.32 16
3 C 0.50 6.74 6.79 -10.99 -0.07 6.67 16
4 O -0.53 -9.30 15.97 5.55 0.09 -9.21 16
5 C 0.10 1.01 3.34 -68.21 -0.23 0.78 16
6 H 0.12 0.85 6.31 -51.93 -0.33 0.52 16
7 C 0.11 0.86 7.30 -3.17 -0.02 0.84 16
8 N -0.64 -6.61 3.36 -186.74 -0.63 -7.24 16
9 C 0.12 0.89 11.21 59.85 0.67 1.56 16
10 C 0.71 9.75 8.60 -88.39 -0.76 8.99 16
11 O -0.58 -10.24 17.29 5.29 0.09 -10.15 16
12 N -0.71 -8.57 5.63 -59.33 -0.33 -8.90 16
13 C 0.13 2.04 3.58 -66.10 -0.24 1.80 16
14 H 0.11 1.82 6.99 -51.93 -0.36 1.46 16
15 C -0.14 -2.07 6.53 -24.59 -0.16 -2.23 16
16 C 0.12 2.09 6.35 -2.53 -0.02 2.08 16
17 N -0.61 -13.36 2.79 -170.08 -0.47 -13.83 16
18 C -0.25 -6.55 10.57 -15.06 -0.16 -6.71 16
19 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16
20 C 0.03 0.71 5.44 -17.43 -0.09 0.62 16
21 N -0.90 -27.00 13.97 55.49 0.78 -26.23 16
22 Si 0.88 22.35 24.38 -169.99 -4.14 18.21 16
23 H -0.29 -7.12 6.85 56.52 0.39 -6.73 16
24 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16
25 H -0.28 -6.93 6.86 56.52 0.39 -6.55 16
26 C 0.11 2.29 4.25 -3.07 -0.01 2.28 16
27 H 0.06 0.47 7.99 -51.93 -0.41 0.06 16
28 H 0.10 1.44 5.19 -51.93 -0.27 1.17 16
29 H 0.07 0.50 5.94 -51.93 -0.31 0.19 16
30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16
31 H 0.09 0.67 7.73 -51.93 -0.40 0.27 16
32 H 0.09 0.76 7.52 -51.93 -0.39 0.36 16
33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
35 H 0.43 4.95 8.96 -40.82 -0.37 4.58 16
36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
39 H 0.04 0.54 5.54 -51.93 -0.29 0.25 16
40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
41 H 0.04 0.82 3.32 -51.92 -0.17 0.65 16
42 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16
LS Contribution 328.08 15.07 4.94 4.94
Total: -1.00 -36.01 328.08 -6.60 -42.62
By element:
Atomic # 1 Polarization: 6.17 SS G_CDS: -5.84 Total: 0.33 kcal
Atomic # 6 Polarization: 18.39 SS G_CDS: -0.60 Total: 17.79 kcal
Atomic # 7 Polarization: -63.37 SS G_CDS: -1.14 Total: -64.52 kcal
Atomic # 8 Polarization: -19.55 SS G_CDS: 0.18 Total: -19.37 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -36.01 -6.60 -42.62 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033336082.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.602 kcal
(2) G-P(sol) polarization free energy of solvation -36.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.588 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds